ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal6i12 |
|---|---|
| Clone Library Name | barley_pub |
>SYM_AGRT5 (Q8UFA2) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 516 Score = 32.7 bits (73), Expect = 0.86 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = +3 Query: 330 GKALSRDLGVVPRGDGLVLNYYLDPRTCGVPRIESSRVDGRSRWQGLASRIWHSGTARGI 509 G+ +S+ LG V LV ++ LDP R S DG +G+A+RI ++ A GI Sbjct: 300 GEKMSKSLGNVVDPANLVAHFGLDPVRYFFMREVSFGQDGSYSEEGIATRI-NADLANGI 358 Query: 510 GGLNQTLLSRL 542 G L LS + Sbjct: 359 GNLASRSLSMI 369
>CHLL_ANASP (Q8YM62) Light-independent protochlorophyllide reductase| iron-sulfur ATP-binding protein (EC 1.18.-.-) (LI-POR subunit L) (DPOR subunit L) Length = 288 Score = 31.2 bits (69), Expect = 2.5 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 13/86 (15%) Frame = +3 Query: 213 LPRPVLCIGGVVKVELLGRVQKQAI-------DGLYYICISHVQIAGKALSRDLGVVPRG 371 +P PVL + +++ + RV+ + + L Y+C ++ IA + L+R GVVP Sbjct: 195 VPMPVLEVLPLIEDIRVSRVKGKTLFEMAESDPSLNYVCDYYLSIADQILARPEGVVPND 254 Query: 372 D------GLVLNYYLDPRTCGVPRIE 431 L+ ++YL+P VP E Sbjct: 255 APDRELFSLLSDFYLNPGKPQVPNPE 280
>ENV_HV1Z6 (P04580) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 855 Score = 30.4 bits (67), Expect = 4.2 Identities = 25/87 (28%), Positives = 41/87 (47%) Frame = +3 Query: 39 YSPKSIRVQMGYPRSPLRPEALVSDENEGQLIHDTNYVWTYTSPEFPMLQENVLQSFTLP 218 YSP S + + PR P RPE + + E V +++ + L+ L S+ Sbjct: 711 YSPLSFQTLLPAPREPDRPEGIEEEGGERGRDRSIRLVNGFSALIWDDLRNLCLFSYHRL 770 Query: 219 RPVLCIGGVVKVELLGRVQKQAIDGLY 299 R ++ I + VELLGR +A+ L+ Sbjct: 771 RDLILIAARI-VELLGRRGWEALKYLW 796
>ENV_HV1Z2 (P12487) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 853 Score = 30.4 bits (67), Expect = 4.2 Identities = 25/87 (28%), Positives = 41/87 (47%) Frame = +3 Query: 39 YSPKSIRVQMGYPRSPLRPEALVSDENEGQLIHDTNYVWTYTSPEFPMLQENVLQSFTLP 218 YSP S + + PR P RPE + + E V +++ + L+ L S+ Sbjct: 709 YSPLSFQTLLPAPRGPDRPEGIEEEGGERGRDRSIRLVNGFSALIWDDLRNLCLFSYHRL 768 Query: 219 RPVLCIGGVVKVELLGRVQKQAIDGLY 299 R ++ I + VELLGR +A+ L+ Sbjct: 769 RDLILIAARI-VELLGRRGWEALKYLW 794
>CCNK_MOUSE (O88874) Cyclin-K| Length = 554 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 560 PQRTTEQSAQESLVQSSYPSRRARMPDP*RQA 465 PQ+ ++QSAQ+ Q+ P + + P P RQA Sbjct: 303 PQKDSQQSAQQQQQQAQQPKKPSPQPSPPRQA 334
>ENV_HV1Z8 (P05882) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 863 Score = 30.4 bits (67), Expect = 4.2 Identities = 26/87 (29%), Positives = 41/87 (47%) Frame = +3 Query: 39 YSPKSIRVQMGYPRSPLRPEALVSDENEGQLIHDTNYVWTYTSPEFPMLQENVLQSFTLP 218 YSP S + + PR P RPE + + E V +++ + L+ L S+ Sbjct: 719 YSPLSFQTLLPAPRGPDRPEGIEEEGGEQGRDRSIRLVNGFSALFWDDLRNLCLFSYHRL 778 Query: 219 RPVLCIGGVVKVELLGRVQKQAIDGLY 299 R ++ I + VELLGR +AI L+ Sbjct: 779 RDLILIATRI-VELLGRRGWEAIKYLW 804
>ENV_HV1W2 (P05880) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 847 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/77 (31%), Positives = 35/77 (45%) Frame = +3 Query: 39 YSPKSIRVQMGYPRSPLRPEALVSDENEGQLIHDTNYVWTYTSPEFPMLQENVLQSFTLP 218 YSP S + + PR P RPE + + E V + + + L+ L S+ Sbjct: 703 YSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSVRLVHGFLALIWDDLRSLCLFSYHRL 762 Query: 219 RPVLCIGGVVKVELLGR 269 R +L I + VELLGR Sbjct: 763 RDLLLIVKRI-VELLGR 778
>CHLL_SYNY3 (P28373) Light-independent protochlorophyllide reductase| iron-sulfur ATP-binding protein (EC 1.18.-.-) (LI-POR subunit L) (DPOR subunit L) Length = 288 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 13/77 (16%) Frame = +3 Query: 213 LPRPVLCIGGVVKVELLGRVQKQAI-------DGLYYICISHVQIAGKALSRDLGVVPRG 371 +P PVL I +++ + RV+ + + L Y+C ++ IA + LS+ GVVP+ Sbjct: 197 VPMPVLEILPLIEDIRVSRVKGKTLFEMAESDPSLNYVCDYYLNIADQILSQPEGVVPKD 256 Query: 372 D------GLVLNYYLDP 404 L+ ++YL+P Sbjct: 257 AQDRDLFSLLSDFYLNP 273
>CHLL_PORPU (P51187) Light-independent protochlorophyllide reductase| iron-sulfur ATP-binding protein (EC 1.18.-.-) (LI-POR subunit L) (DPOR subunit L) Length = 290 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 13/79 (16%) Frame = +3 Query: 213 LPRPVLCIGGVVKVELLGRVQKQAI-------DGLYYICISHVQIAGKALSRDLGVVPRG 371 +P PVL + +++ + RV+ + + L Y+C ++ IA + ++R GVVP+ Sbjct: 195 VPMPVLEVLPLIEDIRVSRVKGKTLFEMAESDTNLAYVCDYYLNIADQLIARPEGVVPKE 254 Query: 372 D------GLVLNYYLDPRT 410 L+ ++YL+P++ Sbjct: 255 AADRELFSLLSDFYLNPKS 273
>SKI_CHICK (P49140) Ski oncogene (C-ski)| Length = 750 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 308 AYVVETIDCLFLHPPKKLNLHHPTNTENRT 219 A ++ +DC ++PP K +H + ENRT Sbjct: 223 AACIQCLDCRLMYPPHKFVVHSHKSLENRT 252
>SKI_AVIES (P17863) Transforming protein Ski| Length = 437 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 308 AYVVETIDCLFLHPPKKLNLHHPTNTENRT 219 A ++ +DC ++PP K +H + ENRT Sbjct: 202 AACIQCLDCRLMYPPHKFVVHSHKSLENRT 231
>NFS1_ARATH (O49543) Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7)| Length = 453 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = +3 Query: 354 GVVPRGDGLVLNYYLDPRTCGVPRIESSRVDGRSRWQGLASRIWHSGTARGIGGLNQTLL 533 GV + DG+V+N +D R G + + V+G S GL SG+A L + + Sbjct: 328 GVREKLDGVVVNGSMDSRYVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYV 387 Query: 534 SRLFG 548 R G Sbjct: 388 LRALG 392
>ENV_HV1W1 (P31872) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 856 Score = 29.3 bits (64), Expect = 9.5 Identities = 24/77 (31%), Positives = 34/77 (44%) Frame = +3 Query: 39 YSPKSIRVQMGYPRSPLRPEALVSDENEGQLIHDTNYVWTYTSPEFPMLQENVLQSFTLP 218 YSP S + + PR P RPE + E V + + + L+ L S+ Sbjct: 712 YSPLSFQTHLPTPRGPDRPEGTEEEGGERDRDRSVRLVHGFLALIWDDLRSLCLFSYHRL 771 Query: 219 RPVLCIGGVVKVELLGR 269 R +L I + VELLGR Sbjct: 772 RDLLLIVTRI-VELLGR 787
>ENV_HV1S1 (P19550) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 847 Score = 29.3 bits (64), Expect = 9.5 Identities = 23/77 (29%), Positives = 35/77 (45%) Frame = +3 Query: 39 YSPKSIRVQMGYPRSPLRPEALVSDENEGQLIHDTNYVWTYTSPEFPMLQENVLQSFTLP 218 YSP S + + PR P RPE + + E + V + + L+ L S+ Sbjct: 703 YSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSSPLVHGLLALIWDDLRSLCLFSYHRL 762 Query: 219 RPVLCIGGVVKVELLGR 269 R ++ I + VELLGR Sbjct: 763 RDLILIAARI-VELLGR 778 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,656,705 Number of Sequences: 219361 Number of extensions: 1998024 Number of successful extensions: 6250 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6249 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
