ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal6g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full... 789 0.0
2ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA 305 7e-80
3dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
4dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
5dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
6dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
7gb|AY105738.1| Zea mays PCO070960 mRNA sequence 222 8e-55
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 176 4e-41
9gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 176 4e-41
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
11emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxym... 101 2e-18
12emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxym... 96 1e-16
13emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltr... 80 8e-12
14ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYL... 64 4e-07
15emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ... 64 4e-07
16emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B... 64 4e-07
17emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hy... 64 4e-07
18gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 64 4e-07
19gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 64 4e-07
20gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 ... 64 4e-07
21gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 64 4e-07
22gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, co... 64 4e-07
23emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
24gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete s... 64 4e-07
25dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 62 2e-06
26dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone... 62 2e-06
27gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransfera... 62 2e-06
28ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltrans... 50 0.007
29ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltrans... 50 0.007
30ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltrans... 50 0.007
31gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative g... 50 0.007
32gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymeth... 50 0.007
33dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymet... 50 0.007
34gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 50 0.007
35emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Co... 50 0.007
36gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative g... 50 0.007
37gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase... 46 0.11
38gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence 44 0.42
39gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome... 44 0.42
40gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cance... 44 0.42
41gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete se... 44 0.42
42gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Canc... 44 0.42
43gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, co... 42 1.6
44emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C... 42 1.6
45emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H1... 42 1.6
46gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y... 42 1.6
47gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 40 6.5
48ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protei... 40 6.5
49emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, comple... 40 6.5
50gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, co... 40 6.5
51emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin... 40 6.5
52gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, comp... 40 6.5
53ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain struc... 40 6.5
54gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosom... 40 6.5
55dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.5
56gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_1... 40 6.5
57dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.5
58gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA... 40 6.5
59dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, c... 40 6.5 
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA
            sequence
          Length = 1878

 Score =  789 bits (398), Expect = 0.0
 Identities = 454/470 (96%), Gaps = 2/470 (0%)
 Strand = Plus / Plus

                                                                        
Query: 13   cggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggact 72
            ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1325 cggaggcatcagg-atgggaacccccgcacttacatcaagaggatttgttgaggaggact 1383

                                                                        
Query: 73   tcgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctg 132
            ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1384 tcgccaaggttgctgacttcttcgattcggcagtgaacttggccttgaaggttaaagctg 1443

                                                                        
Query: 133  cagcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcc 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 cagcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcc 1503

                                                                        
Query: 193  aagctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaa 252
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1504 aagctgaaattgcaaagcttcgccacgatgtggaggaatatgcgaaacaattcccaacaa 1563

                                                                        
Query: 253  tcggattcgagaaagagaccatgaagtacaagaactaagcactgctgtgtttcaacagc- 311
            | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 1564 ttggattcgagaaggagaccatgaagtacaagaactaagaactgctgtgtttcaacagca 1623

                                                                        
Query: 312  aaggaagcaaacaggaagcacaactgaggacaagtccatgtaaacaatagatccatgatg 371
            ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1624 aaggaagcaaacaagaagcacagctgaggacaagtccatgtaaacaatagatccatgatg 1683

                                                                        
Query: 372  aagcgccatcttatgtaaaaggaatccaagcattttacagaatatgggaactttgtcaat 431
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1684 aagcgccaccatatgtaaaaggaatccaagcattttacagaatatgggaactttgtcgat 1743

                                                              
Query: 432  agtttcttattgcaggcacatactgtaagatgtttcgctgatatgctata 481
            |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1744 agtttcttattgcaggcacatactgtaagatgcttcgctgatatgctata 1793
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>ref|XM_469653.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score =  305 bits (154), Expect = 7e-80
 Identities = 248/278 (89%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggactt 73
            |||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 1399 ggaggcatcagg-atgggaaccccagcactgacctcaagaggatttgttgaggaggactt 1457

                                                                        
Query: 74   cgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctgc 133
             || |||||||| || ||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 1458 tgctaaggttgctgatttcttcgatgcagcagtgaacttggctttgaaggttaaggctgc 1517

                                                                        
Query: 134  agcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcca 193
            |||||  || || |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 1518 agcaggtggaacaaaactgaaggactttgttgccactttgcaatctgatagcaacattca 1577

                                                                        
Query: 194  agctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaat 253
            | | || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 1578 atccgagattgcaaaacttcgccatgatgtggaggaatatgcaaaacagttccccacaat 1637

                                                  
Query: 254  cggattcgagaaagagaccatgaagtacaagaactaag 291
             || || |||||||| ||||||||||||||||||||||
Sbjct: 1638 tgggtttgagaaagaaaccatgaagtacaagaactaag 1675



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                        
Query: 376  gccatcttatgtaaaaggaatccaag-cattttacagaatatgggaactttgtcaatagt 434
            |||||||||||||||||| | ||  | ||||||||||  | ||| |||||||||||||| 
Sbjct: 1787 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 1845

                                           
Query: 435  ttcttattgcaggcacatactgtaagatgtt 465
            ||||||| | || ||| ||||||||||||||
Sbjct: 1846 ttcttatcgtagacacctactgtaagatgtt 1876
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>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full
            insert sequence
          Length = 1402

 Score =  305 bits (154), Expect = 7e-80
 Identities = 248/278 (89%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggactt 73
            |||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 852  ggaggcatcagg-atgggaaccccagcactgacctcaagaggatttgttgaggaggactt 910

                                                                        
Query: 74   cgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctgc 133
             || |||||||| || ||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 911  tgctaaggttgctgatttcttcgatgcagcagtgaacttggctttgaaggttaaggctgc 970

                                                                        
Query: 134  agcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcca 193
            |||||  || || |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 971  agcaggtggaacaaaactgaaggactttgttgccactttgcaatctgatagcaacattca 1030

                                                                        
Query: 194  agctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaat 253
            | | || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 1031 atccgagattgcaaaacttcgccatgatgtggaggaatatgcaaaacagttccccacaat 1090

                                                  
Query: 254  cggattcgagaaagagaccatgaagtacaagaactaag 291
             || || |||||||| ||||||||||||||||||||||
Sbjct: 1091 tgggtttgagaaagaaaccatgaagtacaagaactaag 1128



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                        
Query: 376  gccatcttatgtaaaa-ggaatccaagcattttacagaatatgggaactttgtcaatagt 434
            |||||||||||||||| |||  ||  |||||||||||  | ||| |||||||||||||| 
Sbjct: 1240 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 1298

                                           
Query: 435  ttcttattgcaggcacatactgtaagatgtt 465
            ||||||| | || ||| ||||||||||||||
Sbjct: 1299 ttcttatcgtagacacctactgtaagatgtt 1329
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>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full
            insert sequence
          Length = 1923

 Score =  305 bits (154), Expect = 7e-80
 Identities = 248/278 (89%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggactt 73
            |||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 1322 ggaggcatcagg-atgggaaccccagcactgacctcaagaggatttgttgaggaggactt 1380

                                                                        
Query: 74   cgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctgc 133
             || |||||||| || ||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 1381 tgctaaggttgctgatttcttcgatgcagcagtgaacttggctttgaaggttaaggctgc 1440

                                                                        
Query: 134  agcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcca 193
            |||||  || || |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 1441 agcaggtggaacaaaactgaaggactttgttgccactttgcaatctgatagcaacattca 1500

                                                                        
Query: 194  agctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaat 253
            | | || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 1501 atccgagattgcaaaacttcgccatgatgtggaggaatatgcaaaacagttccccacaat 1560

                                                  
Query: 254  cggattcgagaaagagaccatgaagtacaagaactaag 291
             || || |||||||| ||||||||||||||||||||||
Sbjct: 1561 tgggtttgagaaagaaaccatgaagtacaagaactaag 1598



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                        
Query: 376  gccatcttatgtaaaaggaatccaag-cattttacagaatatgggaactttgtcaatagt 434
            |||||||||||||||||| | ||  | ||||||||||  | ||| |||||||||||||| 
Sbjct: 1710 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 1768

                                           
Query: 435  ttcttattgcaggcacatactgtaagatgtt 465
            ||||||| | || ||| ||||||||||||||
Sbjct: 1769 ttcttatcgtagacacctactgtaagatgtt 1799
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>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full
            insert sequence
          Length = 1976

 Score =  305 bits (154), Expect = 7e-80
 Identities = 248/278 (89%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggactt 73
            |||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 1323 ggaggcatcagg-atgggaaccccagcactgacctcaagaggatttgttgaggaggactt 1381

                                                                        
Query: 74   cgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctgc 133
             || |||||||| || ||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 1382 tgctaaggttgctgatttcttcgatgcagcagtgaacttggctttgaaggttaaggctgc 1441

                                                                        
Query: 134  agcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcca 193
            |||||  || || |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 1442 agcaggtggaacaaaactgaaggactttgttgccactttgcaatctgatagcaacattca 1501

                                                                        
Query: 194  agctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaat 253
            | | || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 1502 atccgagattgcaaaacttcgccatgatgtggaggaatatgcaaaacagttccccacaat 1561

                                                  
Query: 254  cggattcgagaaagagaccatgaagtacaagaactaag 291
             || || |||||||| ||||||||||||||||||||||
Sbjct: 1562 tgggtttgagaaagaaaccatgaagtacaagaactaag 1599



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                        
Query: 376  gccatcttatgtaaaaggaatccaag-cattttacagaatatgggaactttgtcaatagt 434
            |||||||||||||||||| | ||  | ||||||||||  | ||| |||||||||||||| 
Sbjct: 1711 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 1769

                                           
Query: 435  ttcttattgcaggcacatactgtaagatgtt 465
            ||||||| | || ||| ||||||||||||||
Sbjct: 1770 ttcttatcgtagacacctactgtaagatgtt 1800
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>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full
            insert sequence
          Length = 1844

 Score =  305 bits (154), Expect = 7e-80
 Identities = 248/278 (89%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggactt 73
            |||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||
Sbjct: 1315 ggaggcatcagg-atgggaaccccagcactgacctcaagaggatttgttgaggaggactt 1373

                                                                        
Query: 74   cgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctgc 133
             || |||||||| || ||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 1374 tgctaaggttgctgatttcttcgatgcagcagtgaacttggctttgaaggttaaggctgc 1433

                                                                        
Query: 134  agcagcaggtaccaaactgaaggactttgttgccactttgcaatccgacagcaacatcca 193
            |||||  || || |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 1434 agcaggtggaacaaaactgaaggactttgttgccactttgcaatctgatagcaacattca 1493

                                                                        
Query: 194  agctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaat 253
            | | || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 1494 atccgagattgcaaaacttcgccatgatgtggaggaatatgcaaaacagttccccacaat 1553

                                                  
Query: 254  cggattcgagaaagagaccatgaagtacaagaactaag 291
             || || |||||||| ||||||||||||||||||||||
Sbjct: 1554 tgggtttgagaaagaaaccatgaagtacaagaactaag 1591



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                        
Query: 376  gccatcttatgtaaaaggaatccaag-cattttacagaatatgggaactttgtcaatagt 434
            |||||||||||||||||| | ||  | ||||||||||  | ||| |||||||||||||| 
Sbjct: 1703 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 1761

                                           
Query: 435  ttcttattgcaggcacatactgtaagatgtt 465
            ||||||| | || ||| ||||||||||||||
Sbjct: 1762 ttcttatcgtagacacctactgtaagatgtt 1792
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>gb|AY105738.1| Zea mays PCO070960 mRNA sequence
          Length = 1476

 Score =  222 bits (112), Expect = 8e-55
 Identities = 240/280 (85%), Gaps = 7/280 (2%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggactt 73
            |||||||||||| ||||||||||| || ||||| || |||||||||||||| || || ||
Sbjct: 956  ggaggcatcagg-atgggaaccccagcccttacgtcgagaggatttgttgaagaagattt 1014

                                                                        
Query: 74   cgccaaggttgccgaattcttcgattcggcagtgaacttggctttgaaggttaaagctgc 133
            ||| || ||||| || ||||||||| | ||||||||  |||| |||||| |||| |||||
Sbjct: 1015 cgctaaagttgctgacttcttcgatgcagcagtgaatctggccttgaagattaaggctgc 1074

                                                                        
Query: 134  agcagcaggt---accaaactgaaggactttgttgccactttgcaatccgacagcaacat 190
            | |  |||||   || || ||||||||||||||||||||||||||||| || ||||   |
Sbjct: 1075 aacgacaggtggaacaaagctgaaggactttgttgccactttgcaatctgatagca---t 1131

                                                                        
Query: 191  ccaagctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaac 250
            ||||| ||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 1132 ccaagttgagattgcaaagcttcgccatgatgtagaggaatttgcaaaacaattcccaac 1191

                                                    
Query: 251  aatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 1192 aattggatttgagaaagagaccatgaaatacaagaactaa 1231
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  176 bits (89), Expect = 4e-41
 Identities = 131/145 (90%)
 Strand = Plus / Plus

                                                                            
Query: 147      aaactgaaggactttgttgccactttgcaatccgacagcaacatccaagctgaaattgca 206
                |||||||||||||||||||||||||||||||| || |||||||| ||| | || ||||||
Sbjct: 30011176 aaactgaaggactttgttgccactttgcaatctgatagcaacattcaatccgagattgca 30011235

                                                                            
Query: 207      aagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcggattcgagaaa 266
                || |||||||| ||||||||||||||||||||||| ||||| ||||| || || ||||||
Sbjct: 30011236 aaacttcgccatgatgtggaggaatatgcaaaacagttccccacaattgggtttgagaaa 30011295

                                         
Query: 267      gagaccatgaagtacaagaactaag 291
                || ||||||||||||||||||||||
Sbjct: 30011296 gaaaccatgaagtacaagaactaag 30011320



 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                            
Query: 30       ggaacccccgcgcttacatcaagaggatttgttgaggaggacttcgccaaggttgccgaa 89
                |||||||| || || || |||||||||||||||||||||||||| || |||||||| || 
Sbjct: 30010918 ggaaccccagcactgacctcaagaggatttgttgaggaggactttgctaaggttgctgat 30010977

                                                                 
Query: 90       ttcttcgattcggcagtgaacttggctttgaaggttaaagctgcagcag 138
                ||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 30010978 ttcttcgatgcagcagtgaacttggctttgaaggttaaggctgcagcag 30011026



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                            
Query: 376      gccatcttatgtaaaa-ggaatccaagcattttacagaatatgggaactttgtcaatagt 434
                |||||||||||||||| |||  ||  |||||||||||  | ||| |||||||||||||| 
Sbjct: 30011668 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 30011726

                                               
Query: 435      ttcttattgcaggcacatactgtaagatgtt 465
                ||||||| | || ||| ||||||||||||||
Sbjct: 30011727 ttcttatcgtagacacctactgtaagatgtt 30011757
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score =  176 bits (89), Expect = 4e-41
 Identities = 131/145 (90%)
 Strand = Plus / Minus

                                                                         
Query: 147   aaactgaaggactttgttgccactttgcaatccgacagcaacatccaagctgaaattgca 206
             |||||||||||||||||||||||||||||||| || |||||||| ||| | || ||||||
Sbjct: 96575 aaactgaaggactttgttgccactttgcaatctgatagcaacattcaatccgagattgca 96516

                                                                         
Query: 207   aagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcggattcgagaaa 266
             || |||||||| ||||||||||||||||||||||| ||||| ||||| || || ||||||
Sbjct: 96515 aaacttcgccatgatgtggaggaatatgcaaaacagttccccacaattgggtttgagaaa 96456

                                      
Query: 267   gagaccatgaagtacaagaactaag 291
             || ||||||||||||||||||||||
Sbjct: 96455 gaaaccatgaagtacaagaactaag 96431



 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                         
Query: 30    ggaacccccgcgcttacatcaagaggatttgttgaggaggacttcgccaaggttgccgaa 89
             |||||||| || || || |||||||||||||||||||||||||| || |||||||| || 
Sbjct: 96833 ggaaccccagcactgacctcaagaggatttgttgaggaggactttgctaaggttgctgat 96774

                                                              
Query: 90    ttcttcgattcggcagtgaacttggctttgaaggttaaagctgcagcag 138
             ||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 96773 ttcttcgatgcagcagtgaacttggctttgaaggttaaggctgcagcag 96725



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                         
Query: 376   gccatcttatgtaaaaggaatccaag-cattttacagaatatgggaactttgtcaatagt 434
             |||||||||||||||||| | ||  | ||||||||||  | ||| |||||||||||||| 
Sbjct: 96083 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 96025

                                            
Query: 435   ttcttattgcaggcacatactgtaagatgtt 465
             ||||||| | || ||| ||||||||||||||
Sbjct: 96024 ttcttatcgtagacacctactgtaagatgtt 95994
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  176 bits (89), Expect = 4e-41
 Identities = 131/145 (90%)
 Strand = Plus / Plus

                                                                            
Query: 147      aaactgaaggactttgttgccactttgcaatccgacagcaacatccaagctgaaattgca 206
                |||||||||||||||||||||||||||||||| || |||||||| ||| | || ||||||
Sbjct: 30102598 aaactgaaggactttgttgccactttgcaatctgatagcaacattcaatccgagattgca 30102657

                                                                            
Query: 207      aagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcggattcgagaaa 266
                || |||||||| ||||||||||||||||||||||| ||||| ||||| || || ||||||
Sbjct: 30102658 aaacttcgccatgatgtggaggaatatgcaaaacagttccccacaattgggtttgagaaa 30102717

                                         
Query: 267      gagaccatgaagtacaagaactaag 291
                || ||||||||||||||||||||||
Sbjct: 30102718 gaaaccatgaagtacaagaactaag 30102742



 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                            
Query: 30       ggaacccccgcgcttacatcaagaggatttgttgaggaggacttcgccaaggttgccgaa 89
                |||||||| || || || |||||||||||||||||||||||||| || |||||||| || 
Sbjct: 30102340 ggaaccccagcactgacctcaagaggatttgttgaggaggactttgctaaggttgctgat 30102399

                                                                 
Query: 90       ttcttcgattcggcagtgaacttggctttgaaggttaaagctgcagcag 138
                ||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 30102400 ttcttcgatgcagcagtgaacttggctttgaaggttaaggctgcagcag 30102448



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                            
Query: 376      gccatcttatgtaaaaggaatccaag-cattttacagaatatgggaactttgtcaatagt 434
                |||||||||||||||||| | ||  | ||||||||||  | ||| |||||||||||||| 
Sbjct: 30103090 gccatcttatgtaaaagggacccctggcattttacagcgtgtggaaactttgtcaatag- 30103148

                                               
Query: 435      ttcttattgcaggcacatactgtaagatgtt 465
                ||||||| | || ||| ||||||||||||||
Sbjct: 30103149 ttcttatcgtagacacctactgtaagatgtt 30103179
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>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
          Length = 1779

 Score =  101 bits (51), Expect = 2e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                        
Query: 198  gaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcgga 257
            |||||| ||||||| |||||||| |||||||| ||||| |||||||||||||||||||| 
Sbjct: 1486 gaaatttcaaagctacgccacgacgtggaggagtatgccaaacaattcccaacaatcggg 1545

                                           
Query: 258  ttcgagaaagagaccatgaagtacaagaact 288
            || |||||||| |||||||| ||||| ||||
Sbjct: 1546 tttgagaaagaaaccatgaaatacaaaaact 1576
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>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
          Length = 1746

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                        
Query: 188  catccaagctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattccc 247
            ||||||| | |||||  ||||||| ||||| || ||||||||||| || |||||||||||
Sbjct: 1485 catccaatcagaaatctcaaagctacgccatgacgtggaggaatacgcgaaacaattccc 1544

                                                        
Query: 248  aacaatcggattcgagaaagagaccatgaagtacaagaactaag 291
             ||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 1545 gacaatcggatttgagaaagaaaccatgaaatacaaaaactaag 1588



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                        
Query: 27   atgggaacccccgcgcttacatcaagaggatttgttgaggaggacttcgccaaggttgcc 86
            ||||||||||| || || || || || ||||||||||| |||||||| || || ||||||
Sbjct: 1327 atgggaacccctgctctcacctctaggggatttgttgaagaggactttgctaaagttgcc 1386
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>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase
          Length = 1745

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                        
Query: 196  ctgaaattgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcg 255
            ||||||||||||| || || || ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 1468 ctgaaattgcaaaactccgtcatgatgtggaggagtatgctaagcagttccctacaattg 1527

                                                
Query: 256  gattcgagaaagagaccatgaagtacaagaactaag 291
            | || |||||||| |||||||||||||| |||||||
Sbjct: 1528 ggtttgagaaagaaaccatgaagtacaaaaactaag 1563
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>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1);
            glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA,
            complete cds
          Length = 1822

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1630 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1677
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>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
          Length = 198493

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 243    ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
              ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 134371 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 134324
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>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20D10 (ESSA project)
          Length = 147215

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 243   ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
             ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 19956 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 19909
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>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1
            gene)
          Length = 1797

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1606 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1653
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>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1775

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1614 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1661
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>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1716

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1560 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1607
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>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1730

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1561 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1608
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>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1770

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1614 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1661
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>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds
          Length = 1554

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1507 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1554
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>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1771

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1603 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1650
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>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence
          Length = 1725

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 243  ttcccaacaatcggattcgagaaagagaccatgaagtacaagaactaa 290
            ||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 1569 ttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa 1616
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>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                        
Query: 201  attgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcggattc 260
            ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || || || 
Sbjct: 7497 attgcaaagcttcgccacgatgttgaggagtatgcgaaacagtttccaaccattggtttt 7556

                                   
Query: 261  gagaaagagaccatgaagtacaa 283
            ||||| |  || |||||||||||
Sbjct: 7557 gagaaggcaacaatgaagtacaa 7579
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>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
             complete sequence
          Length = 110985

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                         
Query: 201   attgcaaagcttcgccacgatgtggaggaatatgcaaaacaattcccaacaatcggattc 260
             ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || || || 
Sbjct: 95100 attgcaaagcttcgccacgatgttgaggagtatgcgaaacagtttccaaccattggtttt 95159

                                    
Query: 261   gagaaagagaccatgaagtacaa 283
             ||||| |  || |||||||||||
Sbjct: 95160 gagaaggcaacaatgaagtacaa 95182
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>gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransferase mRNA, complete cds
          Length = 1803

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                       
Query: 17   ggcatcaggnatgggaacccccgcgcttacatcaagaggatttgttgaggaggacttcg 75
            ||||||||| |||||||| || |||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1306 ggcatcagg-atgggaactcctgcgcttacttcaaggggatttgttgaggaggatttcg 1363



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 219  gatgtggaggaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatgaag 278
            ||||| ||||| | |||||||||||| ||||| || || || || ||||  |||||||||
Sbjct: 1507 gatgttgaggagtttgcaaaacaatttccaaccattggttttgaaaaagcaaccatgaag 1566

                 
Query: 279  tacaa 283
            |||||
Sbjct: 1567 tacaa 1571
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>ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
            transcript variant AT5G26780.2 mRNA, complete cds
          Length = 1966

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1644 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1692
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>ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
            transcript variant AT5G26780.3 mRNA, complete cds
          Length = 2072

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1644 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1692
to top
>ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
            transcript variant AT5G26780.1 mRNA, complete cds
          Length = 1962

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1596 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1644
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>gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative glycine
            hydroxymethyltransferase (At5g26780) mRNA, complete cds
          Length = 1633

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1540 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1588
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>gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymethyltransferase
            (At5g26780) mRNA, complete cds
          Length = 1933

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1595 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1643
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>dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase
           -like protein, complete cds, clone: RAFL22-26-M08
          Length = 909

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 228 gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
           |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 504 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 552
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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 228   gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
             |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 23097 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 23145
to top
>emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZG06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1960

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1591 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1639
to top
>gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative glycine
            hydroxymethyltransferase (At5g26780) mRNA, complete cds
          Length = 1633

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 228  gaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatga 276
            |||||||| || ||||||||||| || || |||||||||||||| ||||
Sbjct: 1540 gaatatgctaagcaattcccaacgattgggttcgagaaagagacgatga 1588
to top
>gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase mRNA, partial cds
          Length = 284

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 225 gaggaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatgaagtacaa 283
           ||||||| |||||||||||| ||||| || || || || ||||  ||||||||||||||
Sbjct: 10  gaggaatttgcaaaacaatttccaaccattggttttgaaaaagcaaccatgaagtacaa 68
to top
>gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence
          Length = 1923

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 225  gaggaatatgcaaaacaattcccaacaatcggattcgagaaagagaccatgaagtacaag 284
            ||||| ||||| ||||||||||| ||  | || ||||||||||| || ||||| ||||||
Sbjct: 1531 gaggactatgccaaacaattccctactgttggtttcgagaaagaaacaatgaaatacaag 1590

              
Query: 285  aa 286
            ||
Sbjct: 1591 aa 1592
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>gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence
          Length = 201274

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 108   aacttggctttgaaggttaaag 129
             ||||||||||||||||||||||
Sbjct: 32114 aacttggctttgaaggttaaag 32135
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>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209149

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 313    aggaagcaaacaggaagcacaa 334
              ||||||||||||||||||||||
Sbjct: 194756 aggaagcaaacaggaagcacaa 194735
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>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence
          Length = 113964

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 42    cttacatcaagaggatttgttgaggaggacttcg 75
             ||||| ||||| ||||||||||||||||| ||||
Sbjct: 58423 cttacttcaaggggatttgttgaggaggatttcg 58456
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>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187830

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 313   aggaagcaaacaggaagcacaa 334
             ||||||||||||||||||||||
Sbjct: 54227 aggaagcaaacaggaagcacaa 54206
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>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence
          Length = 202155

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 307   acagcaaggaagcaaacaggaagca 331
             |||||| ||||||||||||||||||
Sbjct: 70877 acagcacggaagcaaacaggaagca 70853
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>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3,
              complete sequence
          Length = 122049

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    acagcaacatccaagctgaaa 201
              |||||||||||||||||||||
Sbjct: 104470 acagcaacatccaagctgaaa 104450
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>emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3
              Contains the gene for a novel protein, a ribosomal protein
              L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene
              for a novel zinc finger protein, complete sequence
          Length = 139737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 313    aggaagcaaacaggaagcaca 333
              |||||||||||||||||||||
Sbjct: 105601 aggaagcaaacaggaagcaca 105621
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>gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y, complete sequence
          Length = 209287

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    acagcaacatccaagctgaaa 201
              |||||||||||||||||||||
Sbjct: 169410 acagcaacatccaagctgaaa 169390
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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   aacagcaaggaagcaaacag 325
             ||||||||||||||||||||
Sbjct: 85174 aacagcaaggaagcaaacag 85155
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>ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04710)
           partial mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 296 gctgtgtttcaacagcaaggaagc 319
           ||||||||||||| ||||||||||
Sbjct: 12  gctgtgtttcaactgcaaggaagc 35
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>emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, complete sequence
          Length = 12999

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 193  aagctgaaattgcaaagcttcgcc 216
            ||||||||||||| ||||||||||
Sbjct: 8000 aagctgaaattgccaagcttcgcc 7977
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>gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, complete sequence
          Length = 165863

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   agctgaaattgcaaagcttc 213
             ||||||||||||||||||||
Sbjct: 21807 agctgaaattgcaaagcttc 21826
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>emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin heavy chain 3 (MHC-A)
          Length = 11621

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  aagctgaaattgcaaagcttcgcc 216
            ||||||||||||| ||||||||||
Sbjct: 7863 aagctgaaattgccaagcttcgcc 7886
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>gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, complete sequence
          Length = 170722

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    gagaccatgaagtacaagaa 286
              ||||||||||||||||||||
Sbjct: 117322 gagaccatgaagtacaagaa 117303
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>ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain structural genes family
            member (myo-3) (myo-3) mRNA, complete cds
          Length = 6059

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  aagctgaaattgcaaagcttcgcc 216
            ||||||||||||| ||||||||||
Sbjct: 3542 aagctgaaattgccaagcttcgcc 3565
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>gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosome 13, complete
             sequence
          Length = 178290

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   agctgaaattgcaaagcttc 213
             ||||||||||||||||||||
Sbjct: 83226 agctgaaattgcaaagcttc 83245
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>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12
          Length = 87434

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   atagtttcttattgcaggca 449
             ||||||||||||||||||||
Sbjct: 54617 atagtttcttattgcaggca 54636
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>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence
          Length = 211316

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    aactttgtcaatagtttctt 439
              ||||||||||||||||||||
Sbjct: 122650 aactttgtcaatagtttctt 122669
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>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete
              sequence
          Length = 171738

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    aactttgtcaatagtttctt 439
              ||||||||||||||||||||
Sbjct: 165008 aactttgtcaatagtttctt 164989
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>gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA clone MGC:84058
           IMAGE:6948237), complete cds
          Length = 6578

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 ttaaagctgcagcagcaggt 143
           ||||||||||||||||||||
Sbjct: 221 ttaaagctgcagcagcaggt 240
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>dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, complete cds
          Length = 1449

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  cagcagcaggtaccaaactg 152
            ||||||||||||||||||||
Sbjct: 1222 cagcagcaggtaccaaactg 1203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,553,794
Number of Sequences: 3902068
Number of extensions: 4553794
Number of successful extensions: 115739
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115534
Number of HSP's gapped (non-prelim): 187
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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