ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal6f14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 289 bits (146), Expect = 5e-75 Identities = 297/340 (87%), Gaps = 7/340 (2%) Strand = Plus / Minus Query: 225 actccaaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagt 284 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| | Sbjct: 2219 actccaaatgaacaatcatcgcgtgcacgtcttaatatc-ctttacatgtacctgcaact 2161 Query: 285 ggtgttgtagtcatctgtgagacac-ggggactcagcaatctcatttccaaaggtatcaa 343 | |||| |||| ||||||||| ||| |||||||| ||||||||||||||||| ||||||| Sbjct: 2160 gatgttatagtaatctgtgagccacaggggactcggcaatctcatttccaaaagtatcaa 2101 Query: 344 gactagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaa 403 ||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||| Sbjct: 2100 gactagcaaagcttaatggatgaggtatggttaagtggtgaggctgcagcaagcgactaa 2041 Query: 404 gcatttatttgaggnggctaacttacgaatacaagaataaga--gggggtgatctacgca 461 ||| | |||||||| ||||||||||||| ||||||||||| | ||| ||||||||||| Sbjct: 2040 gca-tcatttgaggtggctaacttacgagtacaagaataaaaacgggaatgatctacgca 1982 Query: 462 t-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgaggc 519 | | ||| ||||||| || |||| |||||||||||| |||| | || |||| || | | Sbjct: 1981 taacagacatgaactattggtgatcaaatgaatgatcctgaagaccttcttacgtcaaac 1922 Query: 520 ataaccccaccgtgtcctctgtcggagaagaagctcacga 559 ||||||||||||||||||| ||||||||| ||||||||| Sbjct: 1921 ataaccccaccgtgtcctcgatcggagaaggagctcacga 1882 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Minus Query: 31 gagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaaca 90 |||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| | Sbjct: 2414 gagtatatggaattggcttacaatcgccacaagctacatcagagtcacatcgatacatta 2355 Query: 91 gatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgataaaaga 150 ||||| || |||| ||||| |||||||||| ||||| || |||||||||||||||||| Sbjct: 2354 catacaatcgccatgaagaagagcagggtccgactacgaacgaaaacaaacgataaaaga 2295 Query: 151 acgatgtcaatccttgctatcccaggctgccggcccagaacccatcctagat 202 |||| ||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct: 2294 acgacgtccatccttgctatcccaggctgccgacctggaacccatcctagat 2243
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 260 bits (131), Expect = 4e-66 Identities = 291/332 (87%), Gaps = 12/332 (3%) Strand = Plus / Plus Query: 225 actccaaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagt 284 |||||||||||||||||| ||||||| |||| | || | |||||| ||||||| ||| | Sbjct: 16565 actccaaatgaacaatcaacgcgctcgcgtca-agtaac-ctttacctgtacctgcaact 16622 Query: 285 ggtgttgtagtcatctgtgagacac-ggggactcagcaatctcatttccaaaggtatcaa 343 ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct: 16623 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 16682 Query: 344 gactagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaa 403 ||||||||||||||||||||||||||||| ||||||||||||| | || | |||| |||| Sbjct: 16683 gactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagc-agcggctaa 16741 Query: 404 gcatttatttgaggnggct-aacttacgaatacaag-aataagaggggg--tgatctacg 459 |||||||||| || |||| ||||||||| ||| || |||||||||||| |||||||| Sbjct: 16742 gcatttattt--ggaggctaaacttacgagtaccagaaataagaggggggaagatctacg 16799 Query: 460 cat-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgag 517 ||| ||||||||||||| ||||||| |||||||||||| |||||| |||| || || || Sbjct: 16800 cataacggacgtgaactactgatgatcaaatgaatgatcctgaacacctacctacgtcag 16859 Query: 518 gcataaccccaccgtgtcctctgtcggagaag 549 |||||||||||||||||||| ||||||||| Sbjct: 16860 acataaccccaccgtgtcctcgatcggagaag 16891 Score = 93.7 bits (47), Expect = 6e-16 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 113 gcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtcaatccttgcta 169 |||||||||| |||| ||| ||||||||||| ||||||| ||| ||| |||||||||| Sbjct: 16447 gcagggtccgactacagacgaaaacaaacgacaaaagaagaacgacgtccatccttgcta 16506 Query: 170 tcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||| ||||||||||||||| Sbjct: 16507 tcccaggctgccggcctggaacccatcctagat 16539 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 43 ttggcttacactcgccacaagctacatcagagtc 76 ||||||||||||||||| |||||||||||||||| Sbjct: 16379 ttggcttacactcgccaaaagctacatcagagtc 16412
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 256 bits (129), Expect = 7e-65 Identities = 298/342 (87%), Gaps = 12/342 (3%) Strand = Plus / Minus Query: 225 actccaaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagt 284 |||||||||||||||||| ||||||| |||| | || | |||||| ||||||| ||| | Sbjct: 11545 actccaaatgaacaatcaacgcgctcgcgtca-agtaac-ctttacctgtacctgcaact 11488 Query: 285 ggtgttgtagtcatctgtgagacac--ggggactcagcaatctcatttccaaaggtatca 342 ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 11487 ggtgttgtagtaatctgtgagccacagggggactcagcaatctcatttccaaaggtatca 11428 Query: 343 agactagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgacta 402 |||||||||||||||||||||||||| ||| ||||||||||||| | || | |||| ||| Sbjct: 11427 agactagcaaagcttaatgggtgaggcatggttaagtggtgaggttgcagc-agcggcta 11369 Query: 403 agcatttatttgaggnggct-aacttacgaatacaag-aataagaggggg-tgatctacg 459 ||||| ||||| || |||| ||||||||| |||||| |||||||||||| |||||||| Sbjct: 11368 agcatatattt--ggtggctaaacttacgagtacaagaaataagagggggaagatctacg 11311 Query: 460 cat-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgag 517 ||| ||||||||||||| ||||||| |||||||||||| |||||| |||| || || || Sbjct: 11310 cataacggacgtgaactactgatgatcaaatgaatgatcctgaacacctacctacgtcag 11251 Query: 518 gcataaccccaccgtgtcctctgtcggagaagaagctcacga 559 |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 11250 acataaccccaccgtgtcctcgatcggagaaggaactcacga 11209 Score = 188 bits (95), Expect = 1e-44 Identities = 257/301 (85%), Gaps = 9/301 (2%) Strand = Plus / Minus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||| ||||||| ||| |||||||||||| ||||||||| || |||||||||||||| Sbjct: 3967 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccataggggactcagcaat 3908 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| Sbjct: 3907 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtcgtg 3848 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggct-aacttacgaatacaag-aat 441 ||| | || | |||| |||||||| || || || |||| |||||| || |||||| ||| Sbjct: 3847 aggttgcagc-agcggctaagcatatagtt--ggtggctaaacttatgagtacaagaaat 3791 Query: 442 aagagggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatga-tctt 498 |||||||| || |||||||| ||||||||| ||| ||||||| |||||||||| || | Sbjct: 3790 aagaggggaagagctacgcataacggacgtgagctactgatgatcaaatgaatgattcct 3731 Query: 499 gaacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacg 558 ||||| |||| | || || |||||||||||||||||||| ||||||||| | |||||| Sbjct: 3730 gaacacctacccacgtcagacataaccccaccgtgtcctcgatcggagaaggaactcacg 3671 Query: 559 a 559 | Sbjct: 3670 a 3670 Score = 119 bits (60), Expect = 1e-23 Identities = 139/164 (84%), Gaps = 6/164 (3%) Strand = Plus / Minus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtcatc 102 ||||||||||||||||||||| |||||||||||||||||| ||| | ||| ||||| Sbjct: 11729 ttggcttacactcgccacaagttacatcagagtcacatcagtacattacataa--tcatc 11672 Query: 103 atgtagaagggcagggtccggctacggacaaaaacaaacgataaaa----gaacgatgtc 158 | | ||| |||||||||| |||||||| ||||||||||| |||| |||||| ||| Sbjct: 11671 aagagtaagagcagggtccgactacggacgaaaacaaacgagaaaaataagaacgacgtc 11612 Query: 159 aatccttgctatcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 11611 catccttgctatcccaggctgccggcctggaacccatcctagat 11568 Score = 93.7 bits (47), Expect = 6e-16 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 113 gcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtcaatccttgcta 169 |||||||||| |||||||| ||||||||||| ||||||| ||| || |||||||||| Sbjct: 4123 gcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccatccttgcta 4064 Query: 170 tcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||| ||||||||||||||| Sbjct: 4063 tcccaggctgccggcctggaacccatcctagat 4031 Score = 79.8 bits (40), Expect = 9e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatca 82 |||||||||||||||||||||||||||||||||||||||| Sbjct: 4191 ttggcttacactcgccacaagctacatcagagtcacatca 4152
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 250 bits (126), Expect = 4e-63 Identities = 296/340 (87%), Gaps = 11/340 (3%) Strand = Plus / Minus Query: 225 actccaaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagt 284 |||||||||||||||||| ||||||||||| | || || ||||| ||||||| ||| | Sbjct: 10884 actccaaatgaacaatcaacgcgctcacgtga-agtacca-tttacctgtacctgcaact 10827 Query: 285 ggtgttgtagtcatctgtgagacac-ggggactcagcaatctcatttccaaaggtatcaa 343 ||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||| Sbjct: 10826 ggtgttgtagtaatctgtgagccacaggggactcaacaatctcatttccaaaggtatcaa 10767 Query: 344 gactagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaa 403 ||||||||||||| ||||||||||| ||| ||||||||||||| | || | |||| |||| Sbjct: 10766 gactagcaaagctcaatgggtgaggcatggttaagtggtgaggttgcagc-agcggctaa 10708 Query: 404 gcatttatttgaggnggctaacttacgaatacaag-aataagaggggg-tgatctacgca 461 |||| ||||| || ||||||||||||| |||||| |||||||||||| |||||||||| Sbjct: 10707 gcatatattt--ggtggctaacttacgagtacaagaaataagagggggaagatctacgca 10650 Query: 462 t-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgaggc 519 | |||||||||||||| ||||||| ||||||||||| |||||| |||| || || || | Sbjct: 10649 tagcggacgtgaactactgatgat-caatgaatgatcctgaacacctacctacgtcagac 10591 Query: 520 ataaccccaccgtgtcctctgtcggagaagaagctcacga 559 ||||||||||||||||||| ||||||||| | ||||||| Sbjct: 10590 ataaccccaccgtgtcctcgatcggagaaggaactcacga 10551 Score = 115 bits (58), Expect = 2e-22 Identities = 138/163 (84%), Gaps = 5/163 (3%) Strand = Plus / Minus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtcatc 102 |||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||| Sbjct: 11070 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataa--tcatc 11013 Query: 103 atgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtca 159 | | ||| |||||||||| |||||||| ||||||||||| ||||||| ||| ||| Sbjct: 11012 aagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtcc 10953 Query: 160 atccttgctatcccaggctgccggcccagaacccatcctagat 202 ||||||||||||| ||| |||||||| ||||||||||||||| Sbjct: 10952 atccttgctatccgagggtgccggcctggaacccatcctagat 10910 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gtgagacacggggactcagcaatct 325 ||||| ||||||||||||||||||| Sbjct: 27192 gtgagccacggggactcagcaatct 27168
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 238 bits (120), Expect = 2e-59 Identities = 260/298 (87%), Gaps = 8/298 (2%) Strand = Plus / Plus Query: 267 ttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaatct 325 |||| ||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 68376 ttacgtgtacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatct 68435 Query: 326 catttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtgag 385 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 68436 catttccaaaggtatcaagactagcaaagctttatgggtgaggtatggttaagtggtgag 68495 Query: 386 gctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaag-aataag 444 | | || | ||||||||||||| ||||| || ||||||||||||| ||| || |||||| Sbjct: 68496 gttgcagc-agcgactaagcatatattt--ggtggctaacttacgagtaccagaaataag 68552 Query: 445 a-gggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaa 501 | ||||| || |||||||| ||| |||||||||| ||||| |||||||||||| |||| Sbjct: 68553 aggggggagaactacgcatagcgaacgtgaactacagatgaccaaatgaatgatcctgaa 68612 Query: 502 catctacttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacga 559 || |||| || || || |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 68613 cacctacctacgtcagtcataaccccaccgtgtcctcgatcggagaaggaactcacga 68670 Score = 101 bits (51), Expect = 2e-18 Identities = 83/93 (89%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 113 gcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtcaatccttgcta 169 |||||||||| |||||||| ||||||||||| ||||||| ||| ||| |||||||||| Sbjct: 68221 gcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatccttgcta 68280 Query: 170 tcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||| ||||||||||||||| Sbjct: 68281 tcccaggctgccggcctggaacccatcctagat 68313 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 43 ttggcttacactcgccacaagctacatcagagtcacat 80 ||||||||||||||||||| |||||||||||||||||| Sbjct: 68153 ttggcttacactcgccacaggctacatcagagtcacat 68190
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 236 bits (119), Expect = 6e-59 Identities = 293/342 (85%), Gaps = 12/342 (3%) Strand = Plus / Minus Query: 225 actccaaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagt 284 |||||||||||||||||| |||||||||||| || |||||||||||||| ||| | Sbjct: 131374 actccaaatgaacaatcaacgcgctcacgtc--aagtgacctttacatgtacctgcaact 131317 Query: 285 ggtgttgtagtcatctgtgagacacggg-gactcagcaatctcatttccaaaggtatcaa 343 ||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct: 131316 ggtgttgtagtaatctgtgagccacaggtgactcagcaatctcatttccaaaggtatcaa 131257 Query: 344 gactagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaa 403 ||||||||||||||||||||||||| ||| ||||||||||||| | || | |||| |||| Sbjct: 131256 gactagcaaagcttaatgggtgaggcatggttaagtggtgaggttgcagc-agcggctaa 131198 Query: 404 gcatttatttgaggnggctaacttacgaatacaagaa-taagaggggg---tgatctacg 459 |||| |||| || |||||| | ||| |||||||| |||||||||| ||||||||| Sbjct: 131197 gcataaattt--ggtggctaaactccgagtacaagaattaagagggggggatgatctacg 131140 Query: 460 cat-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgag 517 ||| |||| |||||||| ||||||| |||||||||||| |||||| |||| || || || Sbjct: 131139 cataacggatgtgaactactgatgatcaaatgaatgatcctgaacacctacctacgtcag 131080 Query: 518 gcataaccccaccgtgtcctctgtcggagaagaagctcacga 559 |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 131079 acataaccccaccgtgtcctcgatcggagaaggaactcacga 131038 Score = 212 bits (107), Expect = 9e-52 Identities = 260/301 (86%), Gaps = 9/301 (2%) Strand = Plus / Minus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||| ||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||| Sbjct: 326933 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaat 326874 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 326873 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtg 326814 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggct-aacttacgaatacaagaa-t 441 ||| | | | |||| |||||||||||||| || ||| |||||| || |||||||| | Sbjct: 326813 aggttgtagc-agcggctaagcatttattt--ggtcgctaaacttatgagtacaagaagt 326757 Query: 442 aaga-gggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatgatctt 498 |||| ||||| ||||||| ||| ||||||||||||| || |||| |||||||||||| | Sbjct: 326756 aagaggggggagatctacacataacggacgtgaactattgttgatcaaatgaatgatcct 326697 Query: 499 gaacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacg 558 ||||| |||| || || || |||||||||||||||||||| ||| ||||| | |||||| Sbjct: 326696 gaacacctacctacgtcagacataaccccaccgtgtcctcgatcgaagaaggaactcacg 326637 Query: 559 a 559 | Sbjct: 326636 a 326636 Score = 174 bits (88), Expect = 2e-40 Identities = 219/256 (85%), Gaps = 9/256 (3%) Strand = Plus / Minus Query: 310 ggggactcagcaatctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggt 369 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 178648 ggggactcagcaatctcatttcgaaaggtatcaagactagcaaagcttaatgggtgaggc 178589 Query: 370 atgattaagtggtgaggctacatcaagcgactaagcatttatttgaggnggctaacttac 429 || ||||||||||||| | || | |||| |||||||| |||| || |||||| | | Sbjct: 178588 atagttaagtggtgaggttgcagc-agcggctaagcataaattt--ggtggctaaactcc 178532 Query: 430 gaatacaagaa-taagaggggg---tgatctacgcat-gcggacgtgaacta-tgatgat 483 || |||||||| |||||||||| |||||||||||| |||| |||||||| ||||||| Sbjct: 178531 gagtacaagaattaagagggggggatgatctacgcataacggatgtgaactactgatgat 178472 Query: 484 gaaatgaatgatcttgaacatctacttatgtgaggcataaccccaccgtgtcctctgtcg 543 |||||||||||| |||||| |||| || || || |||||||||||||||||||| ||| Sbjct: 178471 caaatgaatgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcg 178412 Query: 544 gagaagaagctcacga 559 |||||| | ||||||| Sbjct: 178411 gagaaggaactcacga 178396 Score = 133 bits (67), Expect = 7e-28 Identities = 147/172 (85%), Gaps = 5/172 (2%) Strand = Plus / Minus Query: 34 tatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaacagat 93 ||||| || |||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct: 327166 tatatagagttggcttacactcgccacaagctacatcagagtcacatcagtacattacat 327107 Query: 94 acagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa-- 151 | |||||| | ||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 327106 aa--tcatcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaagaaga 327049 Query: 152 -cgatgtcaatccttgctatcccaggctgccggcccagaacccatcctagat 202 ||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 327048 acgacgtccatccttgctatcccaggctgccggcctggaacccatcctagat 326997 Score = 85.7 bits (43), Expect = 1e-13 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 113 gcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtcaatccttgcta 169 |||||||||| ||||||| ||||||||||| ||||||| ||| ||| |||||||||| Sbjct: 131489 gcagggtccgactacggaagaaaacaaacgagaaaagaagaacgacgtccatccttgcta 131430 Query: 170 tcccaggctgccggcccagaacccatcctagat 202 ||||||||||||| || ||||||||||||||| Sbjct: 131429 tcccaggctgccgccctggaacccatcctagat 131397 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 34 tatatggaattggcttacactcgccacaagctacatcagagtcacatca 82 ||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 131563 tatatagagttggcttacactcgccacaagctacatcagagtcacatca 131515 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 297 atctgtgagacacggggactcagcaatct 325 ||||||||| ||||||||||||||||||| Sbjct: 182078 atctgtgagccacggggactcagcaatct 182106 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 297 atctgtgagacacggggactcagcaatct 325 ||||||||| ||||||||||||||||||| Sbjct: 162281 atctgtgagccacggggactcagcaatct 162309 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 297 atctgtgagacacggggactcagcaatct 325 ||||||||| ||||||||||||||||||| Sbjct: 159018 atctgtgagccacggggactcagcaatct 159046 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 297 atctgtgagacacggggactcagcaatct 325 ||||||||| ||||||||||||||||||| Sbjct: 114504 atctgtgagccacggggactcagcaatct 114532 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gtgagacacggggactcagcaatct 325 ||||| ||||||||||||||||||| Sbjct: 74663 gtgagccacggggactcagcaatct 74639 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gtgagacacggggactcagcaatct 325 ||||| ||||||||||||||||||| Sbjct: 63858 gtgagccacggggactcagcaatct 63834
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 228 bits (115), Expect = 2e-56 Identities = 294/341 (86%), Gaps = 11/341 (3%) Strand = Plus / Plus Query: 225 actccaaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagt 284 |||||| ||||||||||| |||||||||||| |||| | |||||| ||||||| ||| | Sbjct: 3505 actccagatgaacaatcaacgcgctcacgtcg-aataac-ctttacctgtacctgcaact 3562 Query: 285 ggtgttgtagtcatctgtgagacac-ggggactcagcaatctcatttccaaaggtatcaa 343 ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct: 3563 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 3622 Query: 344 gactagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaa 403 ||||||||||||||||||||||||| ||| |||||||||||| | || | ||||||||| Sbjct: 3623 gactagcaaagcttaatgggtgaggcatggttaagtggtgagattgcagc-agcgactaa 3681 Query: 404 gcatttatttgaggnggct-aacttacgaatacaag-aataaga-gggggtgatctacgc 460 |||| ||| | || |||| ||||||||| ||| || ||||||| ||||| ||||||||| Sbjct: 3682 gcatatatct--ggtggctaaacttacgagtaccagaaataagaggggggagatctacgc 3739 Query: 461 at-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgagg 518 || ||||||||||||| ||||| |||||||||||| |||||| ||| || || || Sbjct: 3740 ataacggacgtgaactacagatgaccaaatgaatgatcctgaacacctaactacgtcagt 3799 Query: 519 cataaccccaccgtgtcctctgtcggagaagaagctcacga 559 |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 3800 cataaccccaccgtgtcctcgatcggagaaggaactcacga 3840 Score = 101 bits (51), Expect = 2e-18 Identities = 138/164 (84%), Gaps = 6/164 (3%) Strand = Plus / Plus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtcatc 102 |||||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||| Sbjct: 3318 ttggcttacactcgccacaagctacatcagagtcacctcagtacattacataa--tcatc 3375 Query: 103 atgtagaagggcagggtccggctacggac-aaaaacaaacgataaaagaa---cgatgtc 158 | | ||| |||||||||| ||| ||| |||||||||||| ||||||| ||| ||| Sbjct: 3376 aagagtaagagcagggtccgactatggatgaaaaacaaacgacaaaagaagaacgacgtc 3435 Query: 159 aatccttgctatcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3436 catccttgctatcccaggctgccggcctggaacccatcctagat 3479
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 226 bits (114), Expect = 6e-56 Identities = 260/300 (86%), Gaps = 8/300 (2%) Strand = Plus / Plus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||| ||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||| Sbjct: 37512 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaat 37571 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 |||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct: 37572 ctcatttccaaaggtatcaagactggcaaagcttaatgggtgaggaatggttaagtggtg 37631 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaag-aata 442 ||| | || | ||||||||||||| ||||| || ||||||||||||| ||| || |||| Sbjct: 37632 aggttgcagc-agcgactaagcatatattt--ggtggctaacttacgagtaccagaaata 37688 Query: 443 agagggg-gtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatgatcttg 499 ||||||| ||| ||||||| |||||||||||||| ||||| |||||||||||| | Sbjct: 37689 agaggggaaagatgtacgcatagcggacgtgaactacagatgaccaaatgaatgatcccg 37748 Query: 500 aacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacga 559 |||| |||| || || || |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 37749 aacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaaggaactcacga 37808 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/89 (88%), Gaps = 2/89 (2%) Strand = Plus / Plus Query: 116 gggtccggctacggacaaaaacaaacgataaaag--aacgatgtcaatccttgctatccc 173 ||||||| |||||||| ||||||||||| |||| ||||| ||| |||||||||||||| Sbjct: 37360 gggtccgactacggacgaaaacaaacgagaaaatgaaacgacgtccatccttgctatccc 37419 Query: 174 aggctgccggcccagaacccatcctagat 202 |||||||||||| ||||||||||||||| Sbjct: 37420 aggctgccggcctggaacccatcctagat 37448 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatca 82 ||||||||||||| |||||||||||||||||||||||||| Sbjct: 37289 ttggcttacactcaccacaagctacatcagagtcacatca 37328
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 220 bits (111), Expect = 4e-54 Identities = 254/293 (86%), Gaps = 8/293 (2%) Strand = Plus / Plus Query: 272 tgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaatctcattt 330 ||||||| ||| |||||||||||| ||||||||| ||| ||||||||||||||||||||| Sbjct: 65083 tgtacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcattt 65142 Query: 331 ccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtgaggctac 390 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | | Sbjct: 65143 ccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaaatggtgaggttgc 65202 Query: 391 atcaagcgactaagcatttatttgaggnggctaacttacgaatacaag-aataagagggg 449 | | |||| |||||||| ||||| || ||||||||||||| |||||| || |||||||| Sbjct: 65203 agc-agcggctaagcatatattt--ggtggctaacttacgagtacaagaaacaagagggg 65259 Query: 450 g-tgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatct 506 | ||||||||||| ||||||||||||| | ||||| ||| || ||||| |||||| || Sbjct: 65260 gaagatctacgcataacggacgtgaactactcatgatcaaaagactgatcctgaacacct 65319 Query: 507 acttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacga 559 || || || || ||||||||||| |||||||| ||||||||| | ||||||| Sbjct: 65320 acctacgtcagacataaccccacagtgtcctcgatcggagaaggaactcacga 65372 Score = 131 bits (66), Expect = 3e-27 Identities = 140/163 (85%), Gaps = 5/163 (3%) Strand = Plus / Plus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtcatc 102 |||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||| Sbjct: 64849 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataa--tcatc 64906 Query: 103 atgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtca 159 | | ||| |||||||||| |||||||| ||||||||||| ||||||| ||| ||| Sbjct: 64907 aagagtaagagcagggtccgtctacggacgaaaacaaacgacaaaagaagaacgacgtcc 64966 Query: 160 atccttgctatcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 64967 atccttgctatcccaggctgccggcctggaacccatcctagat 65009
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 220 bits (111), Expect = 4e-54 Identities = 252/289 (87%), Gaps = 9/289 (3%) Strand = Plus / Minus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||| Sbjct: 10327 ctttacatgtacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaat 10268 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| Sbjct: 10267 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggcatggttaggtggtg 10208 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaag-aata 442 ||| | || | |||| |||||||| ||||| || ||||| ||||||| |||||| |||| Sbjct: 10207 aggttgcagc-agcggctaagcatatattt--ggtggctagcttacgagtacaagaaata 10151 Query: 443 agag-ggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatgatcttg 499 |||| ||| ||||||||||| ||||||||| |||| ||||||| |||||||||||| Sbjct: 10150 agagtgggaagatctacgcatagcggacgtg-actactgatgatcaaatgaatgatccga 10092 Query: 500 aacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaa 548 |||| |||| || || || |||||||||||||||||||| |||||||| Sbjct: 10091 aacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaa 10043 Score = 149 bits (75), Expect = 1e-32 Identities = 149/172 (86%), Gaps = 5/172 (2%) Strand = Plus / Minus Query: 34 tatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaacagat 93 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct: 10560 tatattgaattggcttacactcgccacaagctacatcagagtcacatcaatacattacat 10501 Query: 94 acagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa-- 151 | | ||||| | ||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 10500 aaa--catcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaaga 10443 Query: 152 -cgatgtcaatccttgctatcccaggctgccggcccagaacccatcctagat 202 ||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 10442 acgacgtccatccttgctatcccaggctgccggcctggaacccatcctagat 10391
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 220 bits (111), Expect = 4e-54 Identities = 252/289 (87%), Gaps = 9/289 (3%) Strand = Plus / Minus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||||||| Sbjct: 2770 ctttacatgtacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaat 2711 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| Sbjct: 2710 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggcatggttaggtggtg 2651 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaag-aata 442 ||| | || | |||| |||||||| ||||| || ||||| ||||||| |||||| |||| Sbjct: 2650 aggttgcagc-agcggctaagcatatattt--ggtggctagcttacgagtacaagaaata 2594 Query: 443 agag-ggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatgatcttg 499 |||| ||| ||||||||||| ||||||||| |||| ||||||| |||||||||||| Sbjct: 2593 agagtgggaagatctacgcatagcggacgtg-actactgatgatcaaatgaatgatccga 2535 Query: 500 aacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaa 548 |||| |||| || || || |||||||||||||||||||| |||||||| Sbjct: 2534 aacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaa 2486 Score = 149 bits (75), Expect = 1e-32 Identities = 149/172 (86%), Gaps = 5/172 (2%) Strand = Plus / Minus Query: 34 tatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaacagat 93 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct: 3003 tatattgaattggcttacactcgccacaagctacatcagagtcacatcaatacattacat 2944 Query: 94 acagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa-- 151 | | ||||| | ||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 2943 aaa--catcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaaga 2886 Query: 152 -cgatgtcaatccttgctatcccaggctgccggcccagaacccatcctagat 202 ||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2885 acgacgtccatccttgctatcccaggctgccggcctggaacccatcctagat 2834
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 218 bits (110), Expect = 1e-53 Identities = 283/327 (86%), Gaps = 13/327 (3%) Strand = Plus / Plus Query: 229 caaatgaacaatcatcgcgctcacgtcttaatatcactttacatgtaccttcaagtggtg 288 |||||||||||||| |||||||||||| |||| | |||||| ||||||| ||| ||||| Sbjct: 102971 caaatgaacaatcaacgcgctcacgtca-aataac-ctttacctgtacctgcaactggtg 103028 Query: 289 ttgtagtcatctgtgagacac-ggggactcagcaatctcatttccaaaggtatcaagact 347 ||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 103029 ttgtagtaatcggtgagccacaggggactcagcaatctcatttccaaaggtatcaagact 103088 Query: 348 agcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaagcat 407 ||||||||||||||||||||| ||| ||||||||||||| | || | |||| |||||||| Sbjct: 103089 agcaaagcttaatgggtgaggcatggttaagtggtgaggttgcagc-agcggctaagcat 103147 Query: 408 ttatttgaggnggct-aacttacgaatacaag-aataagaggggg--tgatctacgcat- 462 ||||| || |||| ||||||||| |||||| |||||||||||| ||||||||||| Sbjct: 103148 atattt--ggtggctaaacttacgagtacaagaaataagaggggggaagatctacgcata 103205 Query: 463 gcggacgtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgaggcat 521 |||| |||| |||| ||||||| |||||| ||||| |||||| ||| || || || ||| Sbjct: 103206 gcgggcgtg-actactgatgatcaaatgactgatcctgaacacatacctacgtcagacat 103264 Query: 522 aaccccaccgtgtcctctgtcggagaa 548 ||||||||||||||||| |||||||| Sbjct: 103265 aaccccaccgtgtcctcgatcggagaa 103291 Score = 131 bits (66), Expect = 3e-27 Identities = 140/163 (85%), Gaps = 5/163 (3%) Strand = Plus / Plus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtcatc 102 |||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||| Sbjct: 102781 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataa--tcatc 102838 Query: 103 atgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtca 159 | | ||| |||||||||| |||||||| ||||||||||| ||||||| ||| ||| Sbjct: 102839 aagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtcc 102898 Query: 160 atccttgctatcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 102899 atccttgctatcccaggctgccggcctggaacccatcctagat 102941
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 190 bits (96), Expect = 3e-45 Identities = 178/203 (87%), Gaps = 2/203 (0%) Strand = Plus / Minus Query: 241 catcgcgctcacgtcttaatatcactttacatgtaccttcaagtggtgttgtagtcatct 300 ||||||||||||||| || ||| | |||| ||||||| ||| ||||||||||| |||| Sbjct: 4104 catcgcgctcacgtcatatcatcgcattacctgtacctgcaactggtgttgtaggaatct 4045 Query: 301 gtgagacacggggactcagcaatctcatttccaaaggtatcaagactagcaaagcttaat 360 ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 4044 gtgagccacggggactcagcaatctcatttccaagggtatcaagactattaaagcttaat 3985 Query: 361 gggtgaggtatgattaagtggtgaggctacatcaagcgactaagcatttatttgaggngg 420 || ||||||| ||||||||||||| | || ||||| ||||||||||||||||| | || Sbjct: 3984 aggcaaggtatggttaagtggtgaggttgcagcaagc-actaagcatttatttga-gtgg 3927 Query: 421 ctaacttacgaatacaagaataa 443 ||||||||||| ||||||||||| Sbjct: 3926 ctaacttacgagtacaagaataa 3904 Score = 115 bits (58), Expect = 2e-22 Identities = 147/174 (84%), Gaps = 7/174 (4%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaa---ca 85 |||||||||||||||||||||||||||||||||||||||| || | |||||||| | Sbjct: 4313 atgagtatatggaattggcttacactcgccacaagctacaacaaaaccacatcaatacaa 4254 Query: 86 caacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 ||||| || || |||||| ||||| |||||||||| |||||||| ||||||||||||| Sbjct: 4253 caacatatccaaacatcatacagaagagcagggtccgactacggacgaaaacaaacgata 4194 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgccggcccagaacccatccta 199 | || || || |||||||||||||||||||||| ||| |||||||||||| Sbjct: 4193 a---aatgacatccatccttgctatcccaggctgcc-gcctggaacccatccta 4144
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 190 bits (96), Expect = 3e-45 Identities = 238/278 (85%), Gaps = 7/278 (2%) Strand = Plus / Plus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||||||||| | ||| |||||||||||| ||||||||| || |||||||||||||| Sbjct: 2802 ctttacatgtacttgcaactggtgttgtagtaatctgtgagccataggggactcagcaat 2861 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 2862 ctcatttccaaagatatcaagactagcaaagcttaatgggtgaggcatggttaagtggtg 2921 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggct-aacttacgaatacaa-gaat 441 ||| | || | |||| ||||||| ||||| || |||| ||||||||| ||||| |||| Sbjct: 2922 aggttgcagc-agcggctaagcacatattt--ggtggctaaacttacgagtacaaggaat 2978 Query: 442 aagagggggtgatctacgcatgcggacgtgaacta-tgatgatgaaatgaatgatcttga 500 |||||||| |||||||||||| | |||||||| | ||||| | |||||||||| ||| Sbjct: 2979 aagaggggatgatctacgcataacgtagtgaactactaatgatcagatgaatgatcctga 3038 Query: 501 acatctacttatgtgaggcataaccccaccgtgtcctc 538 || |||| || || || |||||||||||||||||||| Sbjct: 3039 acgcctacctacgttagacataaccccaccgtgtcctc 3076 Score = 119 bits (60), Expect = 1e-23 Identities = 140/165 (84%), Gaps = 5/165 (3%) Strand = Plus / Plus Query: 45 ggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtcatcat 104 |||||||||||||||||||||||||||||||||||||| ||| | ||| |||||| Sbjct: 2553 ggcttacactcgccacaagctacatcagagtcacatcagtacattacataa--tcatcaa 2610 Query: 105 gtagaagggcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtcaat 161 | ||| |||||||||| |||||||| ||||||| ||| ||||||| ||| ||| || Sbjct: 2611 gggtaagagcagggtccgactacggacgaaaacaaccgagaaaagaagaacgacgtccat 2670 Query: 162 ccttgctatcccaggctgccggcccagaacccatcctagattgat 206 |||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 2671 ccttgctatcccaggctgccggtctggaacccatcctagattgat 2715
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 188 bits (95), Expect = 1e-44 Identities = 257/301 (85%), Gaps = 9/301 (2%) Strand = Plus / Minus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||| ||||||| ||| |||||||||||| ||||||||| || |||||||||||||| Sbjct: 3967 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccataggggactcagcaat 3908 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| Sbjct: 3907 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtcgtg 3848 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggct-aacttacgaatacaag-aat 441 ||| | || | |||| |||||||| || || || |||| |||||| || |||||| ||| Sbjct: 3847 aggttgcagc-agcggctaagcatatagtt--ggtggctaaacttatgagtacaagaaat 3791 Query: 442 aagagggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatga-tctt 498 |||||||| || |||||||| ||||||||| ||| ||||||| |||||||||| || | Sbjct: 3790 aagaggggaagagctacgcataacggacgtgagctactgatgatcaaatgaatgattcct 3731 Query: 499 gaacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacg 558 ||||| |||| | || || |||||||||||||||||||| ||||||||| | |||||| Sbjct: 3730 gaacacctacccacgtcagacataaccccaccgtgtcctcgatcggagaaggaactcacg 3671 Query: 559 a 559 | Sbjct: 3670 a 3670 Score = 131 bits (66), Expect = 3e-27 Identities = 140/163 (85%), Gaps = 5/163 (3%) Strand = Plus / Minus Query: 40 gaattggcttacactcgccacaagctacatcagagtcacatcaacacaacagatacagtc 99 ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || Sbjct: 4188 gaattggcttacactcgccacaagctacatcagagtcacatcagtacattacataa--tc 4131 Query: 100 atcatgtagaagggcagggtccggctacggacaaaaacaaacgataaaagaacgatgtca 159 |||| | ||| |||||||||| |||||||| ||||||||||| |||| ||| ||| Sbjct: 4130 atcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaa---cgacgtcc 4074 Query: 160 atccttgctatcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 4073 atccttgctatcccaggctgccggcctggaacccatcctagat 4031
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 188 bits (95), Expect = 1e-44 Identities = 257/301 (85%), Gaps = 9/301 (2%) Strand = Plus / Minus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacac-ggggactcagcaat 323 |||||| ||||||| ||| |||||||||||| ||||||||| || |||||||||||||| Sbjct: 3967 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccataggggactcagcaat 3908 Query: 324 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtg 383 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| Sbjct: 3907 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtcgtg 3848 Query: 384 aggctacatcaagcgactaagcatttatttgaggnggct-aacttacgaatacaag-aat 441 ||| | || | |||| |||||||| || || || |||| |||||| || |||||| ||| Sbjct: 3847 aggttgcagc-agcggctaagcatatagtt--ggtggctaaacttatgagtacaagaaat 3791 Query: 442 aagagggggtgatctacgcat-gcggacgtgaacta-tgatgatgaaatgaatga-tctt 498 |||||||| || |||||||| ||||||||| ||| ||||||| |||||||||| || | Sbjct: 3790 aagaggggaagagctacgcataacggacgtgagctactgatgatcaaatgaatgattcct 3731 Query: 499 gaacatctacttatgtgaggcataaccccaccgtgtcctctgtcggagaagaagctcacg 558 ||||| |||| | || || |||||||||||||||||||| ||||||||| | |||||| Sbjct: 3730 gaacacctacccacgtcagacataaccccaccgtgtcctcgatcggagaaggaactcacg 3671 Query: 559 a 559 | Sbjct: 3670 a 3670 Score = 93.7 bits (47), Expect = 6e-16 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 113 gcagggtccggctacggacaaaaacaaacgataaaagaa---cgatgtcaatccttgcta 169 |||||||||| |||||||| ||||||||||| ||||||| ||| || |||||||||| Sbjct: 4123 gcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccatccttgcta 4064 Query: 170 tcccaggctgccggcccagaacccatcctagat 202 |||||||||||||||| ||||||||||||||| Sbjct: 4063 tcccaggctgccggcctggaacccatcctagat 4031 Score = 79.8 bits (40), Expect = 9e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 43 ttggcttacactcgccacaagctacatcagagtcacatca 82 |||||||||||||||||||||||||||||||||||||||| Sbjct: 4191 ttggcttacactcgccacaagctacatcagagtcacatca 4152
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 182 bits (92), Expect = 8e-43 Identities = 152/171 (88%), Gaps = 1/171 (0%) Strand = Plus / Minus Query: 267 ttacatgtaccttcaagtggtgttgtagtcatctgtgagacacggggactcagcaatctc 326 |||| ||||||| ||| || |||| |||| || |||||| |||||||||||| ||||||| Sbjct: 4187 ttacctgtacctccaactgttgttatagtaatttgtgagccacggggactcaacaatctc 4128 Query: 327 atttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtgagg 386 |||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct: 4127 atttccaagggtatcaagactattaaagcttaatgggtgaggtacggttaagtggtgagg 4068 Query: 387 ctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaa 437 || || ||||||||||||||||||||||| | || |||||||||||||||| Sbjct: 4067 ctgcagcaagcgactaagcatttatttga-gtggttaacttacgaatacaa 4018 Score = 99.6 bits (50), Expect = 1e-17 Identities = 151/180 (83%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaa 88 |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 4424 atgagtatatagaattggcttacactcgtcacaagctacatcagagtcacatcaatacaa 4365 Query: 89 cag-atacagt-catcatgtagaagggcagggtccggctacggacaaaaacaaacgataa 146 || |||| |||||| | ||| |||||||||| |||||||| ||| ||||| |||| Sbjct: 4364 caacatactcaacatcatacataagagcagggtccgactacggacgaaatcaaacaataa 4305 Query: 147 aagaacgatgtcaatccttgctatcccaggctgccggcccagaacccatcctagattgat 206 || || || ||||||||||||| |||||||| ||| |||| |||||||| |||||| Sbjct: 4304 aatgaca---tccatccttgctatcctaggctgcc-gcctagaatccatcctaaattgat 4249
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 178 bits (90), Expect = 1e-41 Identities = 143/157 (91%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 287 tgttgtagtcatctgtgagacacggggactcagcaatctcatttccaaaggtatcaagac 346 |||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||| Sbjct: 3856 tgttgtaggaatctgtgagccacggggactcaacaatctcatttccaagggtatcaagac 3797 Query: 347 tagcaaagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaagca 406 || |||||||||||||||||||| | |||||||||||||||||| ||||| |||||||| Sbjct: 3796 tattaaagcttaatgggtgaggtaaggttaagtggtgaggctacagcaagc-actaagca 3738 Query: 407 tttatttgaggnggctaacttacgaatacaagaataa 443 |||||||| | ||||||||||||||||||||||||| Sbjct: 3737 -ttatttga-gtggctaacttacgaatacaagaataa 3703 Score = 89.7 bits (45), Expect = 9e-15 Identities = 130/157 (82%), Gaps = 6/157 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaa 88 |||||||||||||||||||||||||||||||||||||||| || |||||||| |||| Sbjct: 4114 atgagtatatggaattggcttacactcgccacaagctacaacaataccacatcaatacaa 4055 Query: 89 cag---atacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 || ||||| |||||| ||||| |||||||| |||||||| ||||||||||||| Sbjct: 4054 catcatatacaaacatcatacagaagagcagggtctaactacggacgaaaacaaacgata 3995 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgccg 182 ||| || | ||||||||||||||||||||||| Sbjct: 3994 aaatgacac---ccatccttgctatcccaggctgccg 3961
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 147 bits (74), Expect = 5e-32 Identities = 181/212 (85%), Gaps = 5/212 (2%) Strand = Plus / Minus Query: 352 aagcttaatgggtgaggtatgattaagtggtgaggctacatcaagcgactaagcatttat 411 ||||||||||| ||||||||| ||||||||||||||| || |||||||||||||| | || Sbjct: 7321 aagcttaatggatgaggtatggttaagtggtgaggctgcagcaagcgactaagca-tcat 7263 Query: 412 ttgaggnggctaacttacgaatacaagaataaga--gggggtgatctacgcat-gcggac 468 |||||| ||||||||||||| ||||||||||| | ||| |||||||||||| | ||| Sbjct: 7262 ttgaggtggctaacttacgagtacaagaataaaaacgggaatgatctacgcataacagac 7203 Query: 469 gtgaacta-tgatgatgaaatgaatgatcttgaacatctacttatgtgaggcataacccc 527 ||||||| || |||| |||||||||||| |||| | || |||| || | ||||||||| Sbjct: 7202 atgaactattggtgatcaaatgaatgatcctgaagaccttcttacgtcaaacataacccc 7143 Query: 528 accgtgtcctctgtcggagaagaagctcacga 559 ||||||||||| ||||||||| ||||||||| Sbjct: 7142 accgtgtcctcgatcggagaaggagctcacga 7111
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 133 bits (67), Expect = 7e-28 Identities = 134/155 (86%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaa 88 |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacaacaatatcacatcaatacat 93 Query: 89 cag---atacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 || ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||| Sbjct: 92 caatatatacaatcatcatacagaagagcagggtccggctacggacgaaaacaaacgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 ||| ||| || ||||||||||||||||||||| Sbjct: 32 aaacaac---atccatccttgctatcccaggctgc 1
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 127 bits (64), Expect = 4e-26 Identities = 134/154 (87%), Gaps = 5/154 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaa 88 |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| Sbjct: 151 atgagtatatggaattggcttacactcgccacaagctacaacaatatcacatcaatacat 92 Query: 89 cag-ata-cagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgataa 146 || ||| || ||||||| ||||| ||||||||||||||||||| |||||||||||||| Sbjct: 91 caatataacaatcatcatacagaagagcagggtccggctacggacgaaaacaaacgataa 32 Query: 147 aagaacgatgtcaatccttgctatcccaggctgc 180 || ||| || ||||||||||||||||||||| Sbjct: 31 aacaac---atccatccttgctatcccaggctgc 1
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 127 bits (64), Expect = 4e-26 Identities = 134/154 (87%), Gaps = 5/154 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaa 88 |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| Sbjct: 151 atgagtatatggaattggcttacactcgccacaagctacaacaatatcacatcaatacat 92 Query: 89 cag-ata-cagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgataa 146 || ||| || ||||||| ||||| ||||||||||||||||||| |||||||||||||| Sbjct: 91 caatataacaatcatcatacagaagagcagggtccggctacggacgaaaacaaacgataa 32 Query: 147 aagaacgatgtcaatccttgctatcccaggctgc 180 || ||| || ||||||||||||||||||||| Sbjct: 31 aacaac---atccatccttgctatcccaggctgc 1
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 125 bits (63), Expect = 2e-25 Identities = 133/155 (85%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaa---ca 85 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaatatcacatcaatacaa 93 Query: 86 caacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 ||||| ||||| |||||| ||||| |||||||||| |||||||| ||||||||||||| Sbjct: 92 caacaaatacaaacatcatacagaagagcagggtccgactacggacgaaaacaaacgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | || || || ||||||||||||||||||||| Sbjct: 32 a---aatgacatccatccttgctatcccaggctgc 1
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 117 bits (59), Expect = 4e-23 Identities = 132/155 (85%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaa---ca 85 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaatatcacatcaatacaa 93 Query: 86 caacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 ||||| ||||| |||||| ||||| |||||||||| |||||||| |||||||| |||| Sbjct: 92 caacatatacaaacatcatacagaagagcagggtccgactacggacgaaaacaaatgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | || || || ||||||||||||||||||||| Sbjct: 32 a---aatgacatccatccttgctatcccaggctgc 1
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 117 bits (59), Expect = 4e-23 Identities = 132/155 (85%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaa---ca 85 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaatatcacatcaatacaa 93 Query: 86 caacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 ||||| ||||| |||||| ||||| |||||||||| |||||||| |||||||| |||| Sbjct: 92 caacatatacaaacatcatacagaagagcagggtccgactacggacgaaaacaaatgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | || || || ||||||||||||||||||||| Sbjct: 32 a---aatgacatccatccttgctatcccaggctgc 1
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 109 bits (55), Expect = 1e-20 Identities = 131/155 (84%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaa---ca 85 |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| | Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctaaatcatgatcatatcaatacaa 93 Query: 86 caacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 ||||| || || ||||||| ||||| |||||||||| |||| ||| ||||||||||||| Sbjct: 92 caacacattcaatcatcatacagaagagcagggtccgactacagacgaaaacaaacgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | ||||| || ||||||||||||||||||||| Sbjct: 32 a---aacgacatccatccttgctatcccaggctgc 1
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 109 bits (55), Expect = 1e-20 Identities = 131/155 (84%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacac-- 86 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaatatcacatcaatacaa 93 Query: 87 -aacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 |||| | || |||||| ||||| |||||||||| |||||||| ||||||||||||| Sbjct: 92 taacatctccaaacatcatacagaagagcagggtccgactacggacgaaaacaaacgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | || || || ||||||||||||||||||||| Sbjct: 32 a---aatgacatccatccttgctatcccaggctgc 1
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 109 bits (55), Expect = 1e-20 Identities = 131/155 (84%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacac-- 86 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaatatcacatcaatacaa 93 Query: 87 -aacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 |||| | || |||||| ||||| |||||||||| |||||||| ||||||||||||| Sbjct: 92 taacatctccaaacatcatacagaagagcagggtccgactacggacgaaaacaaacgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | || || || ||||||||||||||||||||| Sbjct: 32 a---aatgacatccatccttgctatcccaggctgc 1
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 101 bits (51), Expect = 2e-18 Identities = 130/155 (83%), Gaps = 6/155 (3%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaa---ca 85 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaacatcacatcaatacaa 93 Query: 86 caacagatacagtcatcatgtagaagggcagggtccggctacggacaaaaacaaacgata 145 ||||| || | |||||| ||||| ||||||||| |||||||| ||||||||||||| Sbjct: 92 caacatattcgaacatcatacagaagagcagggtccatctacggacgaaaacaaacgata 33 Query: 146 aaagaacgatgtcaatccttgctatcccaggctgc 180 | || || || ||||||||||||||||||||| Sbjct: 32 a---aatgacatccatccttgctatcccaggctgc 1
>gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) gene, complete cds Length = 16224 Score = 93.7 bits (47), Expect = 6e-16 Identities = 149/181 (82%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacacggggactcagcaatc 324 |||||| ||||||| || || ||||||||| ||||||||| || |||||| || ||||| Sbjct: 11142 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggggacccaacaatc 11201 Query: 325 tcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtga 384 ||||| |||| |||| ||| |||||||||||||||||||| || | | ||||||||||| Sbjct: 11202 tcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtga 11261 Query: 385 ggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaagaataag 444 || | |||||| |||||||||| | | || ||||||||||||| ||||||| |||| Sbjct: 11262 ggaggctgcaagcg-ctaagcatttgtat--ggtggctaacttacgagtacaagagtaag 11318 Query: 445 a 445 | Sbjct: 11319 a 11319
>gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) gene, complete cds Length = 15688 Score = 93.7 bits (47), Expect = 6e-16 Identities = 149/181 (82%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacacggggactcagcaatc 324 |||||| ||||||| || || ||||||||| ||||||||| || |||||| || ||||| Sbjct: 10606 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggggacccaacaatc 10665 Query: 325 tcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtga 384 ||||| |||| |||| ||| |||||||||||||||||||| || | | ||||||||||| Sbjct: 10666 tcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtga 10725 Query: 385 ggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaagaataag 444 || | |||||| |||||||||| | | || ||||||||||||| ||||||| |||| Sbjct: 10726 ggaggctgcaagcg-ctaagcatttgtat--ggtggctaacttacgagtacaagagtaag 10782 Query: 445 a 445 | Sbjct: 10783 a 10783
>gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) gene, complete cds Length = 16209 Score = 93.7 bits (47), Expect = 6e-16 Identities = 149/181 (82%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacacggggactcagcaatc 324 |||||| ||||||| || || ||||||||| ||||||||| || |||||| || ||||| Sbjct: 11127 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggggacccaacaatc 11186 Query: 325 tcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtga 384 ||||| |||| |||| ||| |||||||||||||||||||| || | | ||||||||||| Sbjct: 11187 tcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtga 11246 Query: 385 ggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaagaataag 444 || | |||||| |||||||||| | | || ||||||||||||| ||||||| |||| Sbjct: 11247 ggaggctgcaagcg-ctaagcatttgtat--ggtggctaacttacgagtacaagagtaag 11303 Query: 445 a 445 | Sbjct: 11304 a 11304
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 93.7 bits (47), Expect = 6e-16 Identities = 149/181 (82%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 265 ctttacatgtaccttcaagtggtgttgtagtcatctgtgagacacggggactcagcaatc 324 |||||| ||||||| || || ||||||||| ||||||||| || |||||| || ||||| Sbjct: 77678 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggggacccaacaatc 77737 Query: 325 tcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatgattaagtggtga 384 ||||| |||| |||| ||| |||||||||||||||||||| || | | ||||||||||| Sbjct: 77738 tcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtga 77797 Query: 385 ggctacatcaagcgactaagcatttatttgaggnggctaacttacgaatacaagaataag 444 || | |||||| |||||||||| | | || ||||||||||||| ||||||| |||| Sbjct: 77798 ggaggctgcaagcg-ctaagcatttgtat--ggtggctaacttacgagtacaagagtaag 77854 Query: 445 a 445 | Sbjct: 77855 a 77855 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 302 tgagacacggggactcagcaatctc 326 |||| |||||||||||||||||||| Sbjct: 84546 tgagccacggggactcagcaatctc 84570
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 29 atgagtatatggaattggcttacactcgccacaagctacatcagagtcacatcaacacaa 88 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct: 152 atgagtatatggaattggcttacactcgccacaagctacatcaacatcacatcaatacaa 93 Query: 89 ca 90 || Sbjct: 92 ca 91
>gb|AY747599.1| Triticum aestivum cultivar IL369 line VRN-A1 (VRN-A1) gene, complete cds; and gypsy retrotransposon Sukkula, complete sequence Length = 6730 Score = 79.8 bits (40), Expect = 9e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 287 tgttgtagtcatctgtgagacacggggactcagcaatctcatttccaaaggtatcaagac 346 ||||||||| |||| |||| || |||||| ||||||||||||| |||| |||| ||| || Sbjct: 2080 tgttgtagtaatctatgagccatggggacccagcaatctcattaccaagggtagcaaaac 2139 Query: 347 tagcaaagcttaatgggtgaggtatgattaagtggtgagg 386 |||||||| ||||||||| || | | ||||||||||||| Sbjct: 2140 tagcaaagattaatgggtatggaagggttaagtggtgagg 2179
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 71.9 bits (36), Expect = 2e-09 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 287 tgttgtagtcatctgtgagacacggggactcagcaatctcatttccaaaggtatcaagac 346 ||||||||| |||| |||| || |||||| ||||||||||||| |||| |||| ||| || Sbjct: 7817 tgttgtagtaatctatgagccatggggac-cagcaatctcattaccaagggtagcaaaac 7875 Query: 347 tagcaaagcttaatgggtgaggtatgattaagtggtgagg 386 |||||||| ||||||||| || | | ||||||||||||| Sbjct: 7876 tagcaaagattaatgggtatggaagggttaagtggtgagg 7915 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ttacactcgccacaagctaca 68 ||||||||||||||||||||| Sbjct: 7583 ttacactcgccacaagctaca 7603
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 71.9 bits (36), Expect = 2e-09 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 287 tgttgtagtcatctgtgagacacggggactcagcaatctcatttccaaaggtatcaagac 346 ||||||||| |||| |||| || |||||| ||||||||||||| |||| |||| ||| || Sbjct: 7586 tgttgtagtaatctatgagccatggggac-cagcaatctcattaccaagggtagcaaaac 7644 Query: 347 tagcaaagcttaatgggtgaggtatgattaagtggtgagg 386 |||||||| ||||||||| || | | ||||||||||||| Sbjct: 7645 tagcaaagattaatgggtatggaagggttaagtggtgagg 7684 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ttacactcgccacaagctaca 68 ||||||||||||||||||||| Sbjct: 7352 ttacactcgccacaagctaca 7372
>gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repetitive DNA sequence Length = 3244 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 297 atctgtgagacacggggactcagcaatctc 326 ||||||||| |||||||||||||||||||| Sbjct: 2257 atctgtgagccacggggactcagcaatctc 2228
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 297 atctgtgagacacggggactcagcaatctca 327 ||||||||| ||| ||||||||||||||||| Sbjct: 284408 atctgtgagccacagggactcagcaatctca 284378 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 297 atctgtgagacacggggactcagcaatctca 327 ||||||||| ||| ||||||||||||||||| Sbjct: 274894 atctgtgagccacagggactcagcaatctca 274864 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 292 tagtcatctgtgagacacggggactcagcaatctc 326 |||| ||||||||| ||| |||||||||||||||| Sbjct: 3207 tagtaatctgtgagccacagggactcagcaatctc 3241
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 292 tagtcatctgtgagacacggggactcagcaatctc 326 |||| ||||||||| ||| |||||||||||||||| Sbjct: 109943 tagtaatctgtgagccacagggactcagcaatctc 109909 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 297 atctgtgagacacggggactcagcaatctc 326 ||||||||| ||| |||||||||||||||| Sbjct: 151359 atctgtgagccacagggactcagcaatctc 151388
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 297 atctgtgagacacggggactcagcaatctca 327 ||||||||| ||||||||||| ||||||||| Sbjct: 7506 atctgtgagtcacggggactcggcaatctca 7536
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 297 atctgtgagacacggggactcagcaatctca 327 ||||||||| || |||||||||||||||||| Sbjct: 2211 atctgtgagtcatggggactcagcaatctca 2181
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 tccttgctatcccaggctgcc 181 ||||||||||||||||||||| Sbjct: 170021 tccttgctatcccaggctgcc 170001
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 atccttgctatcccaggctgc 180 ||||||||||||||||||||| Sbjct: 21 atccttgctatcccaggctgc 1
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 atccttgctatcccaggctgc 180 ||||||||||||||||||||| Sbjct: 21 atccttgctatcccaggctgc 1
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 atccttgctatcccaggctgc 180 ||||||||||||||||||||| Sbjct: 21 atccttgctatcccaggctgc 1
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 atccttgctatcccaggctgc 180 ||||||||||||||||||||| Sbjct: 21 atccttgctatcccaggctgc 1
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 atccttgctatcccaggctgc 180 ||||||||||||||||||||| Sbjct: 21 atccttgctatcccaggctgc 1
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 atccttgctatcccaggctgc 180 ||||||||||||||||||||| Sbjct: 21 atccttgctatcccaggctgc 1
>emb|AL513204.10| Human DNA sequence from clone RP11-418B8 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 111173 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 gactcagcaatctcatttcca 333 ||||||||||||||||||||| Sbjct: 109921 gactcagcaatctcatttcca 109901
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 196000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 gactcagcaatctcatttcca 333 ||||||||||||||||||||| Sbjct: 35644 gactcagcaatctcatttcca 35624
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 tccttgctatcccaggctgcc 181 ||||||||||||||||||||| Sbjct: 20040 tccttgctatcccaggctgcc 20020
>ref|NM_121669.2| Arabidopsis thaliana damaged DNA binding AT5G16630 transcript variant AT5G16630.1 mRNA, complete cds Length = 2858 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgatgatgaaatgaatgat 495 |||||||||||||||||||| Sbjct: 373 atgatgatgaaatgaatgat 392
>ref|NM_001036817.1| Arabidopsis thaliana damaged DNA binding AT5G16630 transcript variant AT5G16630.2 mRNA, complete cds Length = 2900 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgatgatgaaatgaatgat 495 |||||||||||||||||||| Sbjct: 376 atgatgatgaaatgaatgat 395
>gb|AF068624.1| Homo sapiens 5-aminolevulinate synthase 2 (ALAS2) gene, complete cds Length = 35331 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 atgaaatgaatgatcttgaa 501 |||||||||||||||||||| Sbjct: 10640 atgaaatgaatgatcttgaa 10621
>gb|AC000121.1| Homo sapiens BAC clone CTA-249A12 from 7, complete sequence Length = 93163 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 atcaagcgactaagcatttatttg 414 ||||||| |||||||||||||||| Sbjct: 20451 atcaagctactaagcatttatttg 20474
>ref|XM_643347.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (456.t00003) partial mRNA Length = 2472 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tatgatgatgaaatgaatga 494 |||||||||||||||||||| Sbjct: 1561 tatgatgatgaaatgaatga 1580
>ref|XM_643467.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (431.t00002) partial mRNA Length = 2514 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tatgatgatgaaatgaatga 494 |||||||||||||||||||| Sbjct: 1603 tatgatgatgaaatgaatga 1622
>gb|BT010359.1| Arabidopsis thaliana At5g16630 mRNA, complete cds Length = 2598 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgatgatgaaatgaatgat 495 |||||||||||||||||||| Sbjct: 230 atgatgatgaaatgaatgat 249
>emb|AL020991.1|HS884M20 Human DNA sequence from clone RP5-884M20 on chromosome Xp11.21 Contains the ALAS2 gene for aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia), the APEX2 gene for APEX nuclease (apurinic/apyrimidinic endonuclease) 2, the 5' end of the PFKFB1 gene for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 and a CpG island, complete sequence Length = 114173 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 atgaaatgaatgatcttgaa 501 |||||||||||||||||||| Sbjct: 19971 atgaaatgaatgatcttgaa 19952
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 tatgatgatgaaatgaatga 494 |||||||||||||||||||| Sbjct: 50975 tatgatgatgaaatgaatga 50994
>emb|CR457444.6| Zebrafish DNA sequence from clone CH211-11C3 in linkage group 11, complete sequence Length = 170537 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tcagagtcacatcaacacaacaga 92 |||||||||||||| ||||||||| Sbjct: 128787 tcagagtcacatcagcacaacaga 128764
>gb|AC114321.2| Homo sapiens chromosome 5 clone RP11-710L15, complete sequence Length = 158109 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tcagagtcacatcaacacaa 88 |||||||||||||||||||| Sbjct: 44256 tcagagtcacatcaacacaa 44275
>gb|AC122720.2| Homo sapiens chromosome 5 clone RP11-67M9, complete sequence Length = 160505 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tcagagtcacatcaacacaa 88 |||||||||||||||||||| Sbjct: 149542 tcagagtcacatcaacacaa 149561
>gb|AY062755.1| Arabidopsis thaliana Unknown protein (MTG13.7) mRNA, complete cds Length = 2858 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgatgatgaaatgaatgat 495 |||||||||||||||||||| Sbjct: 373 atgatgatgaaatgaatgat 392
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ttaatatcactttacatgta 275 |||||||||||||||||||| Sbjct: 651125 ttaatatcactttacatgta 651144
>emb|BX832598.1|CNS0A291 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2164 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgatgatgaaatgaatgat 495 |||||||||||||||||||| Sbjct: 344 atgatgatgaaatgaatgat 363
>gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, complete sequence Length = 201567 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 agtggtgttgtagtcatctg 301 |||||||||||||||||||| Sbjct: 78849 agtggtgttgtagtcatctg 78830
>gb|AC112720.2| Homo sapiens BAC clone RP11-696L6 from 2, complete sequence Length = 96416 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gactcagcaatctcatttcc 332 |||||||||||||||||||| Sbjct: 33713 gactcagcaatctcatttcc 33694
>dbj|AB008270.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG13 Length = 50641 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgatgatgaaatgaatgat 495 |||||||||||||||||||| Sbjct: 40548 atgatgatgaaatgaatgat 40567
>emb|Z83821.1|HS296K21 Human DNA sequence from clone RP1-296K21 on chromosome Xq13, complete sequence Length = 111994 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 atgaaatgaatgatcttgaa 501 |||||||||||||||||||| Sbjct: 18469 atgaaatgaatgatcttgaa 18450
>dbj|AK114786.1| Ciona intestinalis cDNA, clone:cieg017d16, full insert sequence Length = 3041 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ggacaaaaacaaacgataaa 147 |||||||||||||||||||| Sbjct: 2445 ggacaaaaacaaacgataaa 2426
>dbj|AK113763.1| Ciona intestinalis cDNA, clone:cicl008f24, full insert sequence Length = 1518 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ggacaaaaacaaacgataaa 147 |||||||||||||||||||| Sbjct: 861 ggacaaaaacaaacgataaa 842
>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence Length = 166555 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 agcaatctcatttccaaagg 337 |||||||||||||||||||| Sbjct: 149747 agcaatctcatttccaaagg 149728
>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b, complete sequence Length = 126514 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 acgtgaactatgatgatgaa 486 |||||||||||||||||||| Sbjct: 119236 acgtgaactatgatgatgaa 119217
>dbj|AB076090.1| Gonium viridistellatum chloroplast rbcL gene for large subunit of Rubisco, partial cds, strain:NIES-654 Length = 1477 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 atgaaatgaatgatcttgaacatc 505 ||||||||||| |||||||||||| Sbjct: 755 atgaaatgaattatcttgaacatc 778 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,459,041 Number of Sequences: 3902068 Number of extensions: 4459041 Number of successful extensions: 77929 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77620 Number of HSP's gapped (non-prelim): 233 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
