ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal6f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOK11_SCHPO (Q09854) Cell wall alpha-1,3-glucan synthase mok11 (... 32 1.6
2YGN1_YEAST (P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1... 30 3.6
3MOK13_SCHPO (Q9Y719) Cell wall alpha-1,3-glucan synthase mok13 (... 30 4.7
4NEK4_MOUSE (Q9Z1J2) Serine/threonine-protein kinase Nek4 (EC 2.7... 29 8.0
5NEK4_HUMAN (P51957) Serine/threonine-protein kinase Nek4 (EC 2.7... 29 8.0
6PEL17_ARATH (O65457) Putative pectate lyase 17 precursor (EC 4.2... 29 8.0

>MOK11_SCHPO (Q09854) Cell wall alpha-1,3-glucan synthase mok11 (EC 2.4.1.183)|
          Length = 2397

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 166 RATVPSLSFILH*SK---LCDVSLQAKHFFLPGKVIGPCSGAAIFF 38
           +AT  ++ F++  +K   LC       +FF+PG+V GP S  AI++
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGEVTGPSSFGAIYY 354



to top

>YGN1_YEAST (P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic|
           region
          Length = 1403

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 15/151 (9%)
 Frame = +3

Query: 54  PEQGPITLPGKKKCFACKETSHN--------LDQCRIKDKLGTVARLFGRSTSFPFYMIQ 209
           P++    LP +++  A K  ++N        + Q +I +K G  A+  G ++  P    +
Sbjct: 2   PKEEDFQLPRRRE--AAKNVNYNEMEIDTKLVQQIQIAEKSG--AKTKGSNSQTPRNCKR 57

Query: 210 PSKEVVKNEKLYHHCLLITSNTC-----NLDPA-RVKTELNKFWELTDDW-DIRREGRQN 368
            S    +NEK  +   L   NTC      L P+ R  +  +   +L D   D+++    N
Sbjct: 58  TSNPASRNEKFKYQKFLHDKNTCWNFIPTLPPSFRKNSRFSNILDLDDAMIDLKKMSLFN 117

Query: 369 FVASFNSEDDLLSCLKPPNVETFLDEKEVNF 461
             +   S +D +  +  P  E +   + VNF
Sbjct: 118 TESVLLSANDTIYMISEPAGEPYYVGRVVNF 148



to top

>MOK13_SCHPO (Q9Y719) Cell wall alpha-1,3-glucan synthase mok13 (EC 2.4.1.183)|
          Length = 2358

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 169 SRATVPSLSFILH*SKLCDVSLQAKHFFLPGKVIGPCSGAAIFF 38
           ++ TV  L+   H  + C  +   K+FF+PG+V G  S  +I++
Sbjct: 310 TQITVDFLASWAHSVRGCAATFNKKNFFIPGEVTGSSSYGSIYY 353



to top

>NEK4_MOUSE (Q9Z1J2) Serine/threonine-protein kinase Nek4 (EC 2.7.11.1)|
           (NimA-related protein kinase 4)
           (Serine/threonine-protein kinase 2)
          Length = 792

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
 Frame = +3

Query: 348 RREGRQNFVASFN-------------SEDDLLSCLKPPNVETFLDEKEVNFSVAMWDGGD 488
           RR+G+Q  +   N              E  LLS LK PN+ T+ +          W+GGD
Sbjct: 26  RRDGKQYVIKKLNLRNASSRERRAAEQEAQLLSQLKHPNIVTYKES---------WEGGD 76

Query: 489 G 491
           G
Sbjct: 77  G 77



to top

>NEK4_HUMAN (P51957) Serine/threonine-protein kinase Nek4 (EC 2.7.11.1)|
           (NimA-related protein kinase 4)
           (Serine/threonine-protein kinase 2)
           (Serine/threonine-protein kinase NRK2)
          Length = 841

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
 Frame = +3

Query: 348 RREGRQNFVASFN-------------SEDDLLSCLKPPNVETFLDEKEVNFSVAMWDGGD 488
           RR+G+Q  +   N              E  LLS LK PN+ T+ +          W+GGD
Sbjct: 26  RRDGKQYVIKKLNLRNASSRERRAAEQEAQLLSQLKHPNIVTYKES---------WEGGD 76

Query: 489 G 491
           G
Sbjct: 77  G 77



to top

>PEL17_ARATH (O65457) Putative pectate lyase 17 precursor (EC 4.2.2.2)|
          Length = 394

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 285 DPARVKTELNKFWELTDDWDIRREGRQNFVASFNS 389
           +P  +   ++  W L  DWD+ RE   +    F S
Sbjct: 41  EPQNIMNPVDSCWRLKSDWDVNREDLADCAVGFGS 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,539,247
Number of Sequences: 219361
Number of extensions: 1850624
Number of successful extensions: 5246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5239
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top