No.
Definition
Score (bits)
E Value
1 dbj|AK066767.1| Oryza sativa (japonica cultivar-group) cDNA clon...
571
e-159
2 dbj|AK069382.1| Oryza sativa (japonica cultivar-group) cDNA clon...
533
e-148
3 ref|NM_185811.1| Oryza sativa (japonica cultivar-group), predic...
478
e-131
4 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
151
3e-33
5 dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic D...
151
3e-33
6 dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic D...
151
3e-33
7 gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se...
44
0.57
8 emb|CR753871.6| Zebrafish DNA sequence from clone CH211-247M23 i...
44
0.57
9 emb|AL360080.21| Human DNA sequence from clone RP11-483I8 on chr...
44
0.57
10 gb|AF411809.1| Lycopersicon esculentum BAC clone FW2.2, complete...
44
0.57
11 gb|AY654587.1| Rabies virus isolate Brhm4138 nucleoprotein gene,...
42
2.3
12 gb|AY654586.1| Rabies virus isolate Brsg4108 nucleoprotein gene,...
42
2.3
13 gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosom...
42
2.3
14 emb|CR391935.9| Zebrafish DNA sequence from clone DKEY-256K13 in...
42
2.3
15 gb|DQ447961.1| Rabies virus isolate brsg5696 nucleoprotein gene,...
42
2.3
16 dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
42
2.3
17 emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chro...
42
2.3
18 ref|NM_123245.2| Arabidopsis thaliana unknown protein AT5G38840 ...
40
8.9
19 gb|AC131245.1| Ciona savignyi, clone XX-4452057O6, complete sequ...
40
8.9
20 gb|BT018703.1| Zea mays clone EL01N0515D02.d mRNA sequence
40
8.9
21 ref|XM_452089.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B12540g ...
40
8.9
22 ref|XM_545926.2| PREDICTED: Canis familiaris similar to Fibrobla...
40
8.9
23 gb|CP000316.1| Polaromonas sp. JS666, complete genome
40
8.9
24 ref|XM_782324.1| PREDICTED: Strongylocentrotus purpuratus simila...
40
8.9
25 emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso...
40
8.9
26 emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp...
40
8.9
27 emb|BX119911.6| Mouse DNA sequence from clone RP23-207N15 on chr...
40
8.9
28 gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y...
40
8.9
29 gb|AC010177.48| Homo sapiens 12 BAC RP11-162N7 (Roswell Park Can...
40
8.9
30 emb|AL805898.11| Mouse DNA sequence from clone RP23-432F24 on ch...
40
8.9
31 dbj|AB009048.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
40
8.9
32 emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple...
40
8.9
33 emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ...
40
8.9
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 151 bits (76), Expect = 3e-33
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 371 gaaaaagatatgcagaaactccgtgatgctaagattcggcaaaatctgcttgatcgtgaa 430
||||||||||||||||| || || ||||||| ||| |||| || ||||||||||||||
Sbjct: 9414692 gaaaaagatatgcagaagcttcgggatgctagagttcagcaagatatgcttgatcgtgaa 9414751
Query: 431 gcttcccttttacgagcgaaaactcaagcagctttagcagatgggatctcatggggtatg 490
|||||||||||||| || |||| |||||||||||||||||| || |||||||||||||||
Sbjct: 9414752 gcttcccttttacgtgcaaaaaatcaagcagctttagcagagggtatctcatggggtatg 9414811
Query: 491 tctgaggatgca 502
||||||||||||
Sbjct: 9414812 tctgaggatgca 9414823
Score = 99.6 bits (50), Expect = 1e-17
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 184 agttctgcagtttagaaacgatgggcaggttttcctttacgatcttggaagcacacatgg 243
|||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 9413415 agttttgcagtttagaaatgatggggaggttttcctttatgatcttggaagcacacatgg 9413474
Query: 244 ttcttccatcaacaaaactcag 265
|| | |||||| |||||||||
Sbjct: 9413475 gtccttcatcaataaaactcag 9413496
Score = 95.6 bits (48), Expect = 2e-16
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 519 aggatgaggcagatgagatcacgtggcaaacctacaaaggtcagcttacggacagacagg 578
||||||| || ||||||||||| |||||||||||||||||||| || || || |||||||
Sbjct: 9414991 aggatgaagctgatgagatcacatggcaaacctacaaaggtcaactcactgatagacagg 9415050
Query: 579 aaaagacacgcagcaaattaataaaacgaatggaaaaggt 618
| || ||||| |||||| ||||||| ||| ||||||||||
Sbjct: 9415051 agaaaacacgaagcaaaataataaagcgattggaaaaggt 9415090
Score = 77.8 bits (39), Expect = 4e-11
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 106 gaaaggagcttacatgtttggccgaattgatctatgcgatttcatgctggagcatcccac 165
||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||
Sbjct: 9412555 gaaaggagcttacatgtttggtcgaattgatctttgcgattttgtattggagcatcccac 9412614
Query: 166 catttcccgttttca 180
||||| || |||||
Sbjct: 9412615 tatttctcgctttca 9412629
Score = 73.8 bits (37), Expect = 6e-10
Identities = 80/93 (86%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 10 tacgccatccccgactggnagcgccggcccggaacaccccttcttcctcgaggtgctcaa 69
|||||||| ||||| ||| ||||||| |||| |||||||||||||||||||| |||||
Sbjct: 9412290 tacgccatacccgagtgg-agcgccgcaccgggccaccccttcttcctcgaggttctcaa 9412348
Query: 70 ggaaggcctcatcgtcgaaaagcttgacgtgtc 102
||| ||| |||||| || ||||||||||||||
Sbjct: 9412349 ggacggcaccatcgttgacaagcttgacgtgtc 9412381
Score = 71.9 bits (36), Expect = 3e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 323 tcatcacgtctgtacattttccaaggaccatctgagctgatgcc 366
||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 9414039 tcatcacgtttgtacatattccaaggaccatctgagctgatgcc 9414082
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 290 attcatgttggagatgtaattcgatttgggcagt 323
||||||||||||||||||||||||||||||||||
Sbjct: 9413850 attcatgttggagatgtaattcgatttgggcagt 9413883
Score = 42.1 bits (21), Expect = 2.3
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 621 ccaacatgaagaaagagatcgatgcaata 649
|||||||||||||||| || |||||||||
Sbjct: 9415446 ccaacatgaagaaagaaattgatgcaata 9415474
>dbj|AP003538.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0059O19
Length = 144386
Score = 151 bits (76), Expect = 3e-33
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 371 gaaaaagatatgcagaaactccgtgatgctaagattcggcaaaatctgcttgatcgtgaa 430
||||||||||||||||| || || ||||||| ||| |||| || ||||||||||||||
Sbjct: 2314 gaaaaagatatgcagaagcttcgggatgctagagttcagcaagatatgcttgatcgtgaa 2373
Query: 431 gcttcccttttacgagcgaaaactcaagcagctttagcagatgggatctcatggggtatg 490
|||||||||||||| || |||| |||||||||||||||||| || |||||||||||||||
Sbjct: 2374 gcttcccttttacgtgcaaaaaatcaagcagctttagcagagggtatctcatggggtatg 2433
Query: 491 tctgaggatgca 502
||||||||||||
Sbjct: 2434 tctgaggatgca 2445
Score = 99.6 bits (50), Expect = 1e-17
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 184 agttctgcagtttagaaacgatgggcaggttttcctttacgatcttggaagcacacatgg 243
|||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 1037 agttttgcagtttagaaatgatggggaggttttcctttatgatcttggaagcacacatgg 1096
Query: 244 ttcttccatcaacaaaactcag 265
|| | |||||| |||||||||
Sbjct: 1097 gtccttcatcaataaaactcag 1118
Score = 95.6 bits (48), Expect = 2e-16
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 519 aggatgaggcagatgagatcacgtggcaaacctacaaaggtcagcttacggacagacagg 578
||||||| || ||||||||||| |||||||||||||||||||| || || || |||||||
Sbjct: 2613 aggatgaagctgatgagatcacatggcaaacctacaaaggtcaactcactgatagacagg 2672
Query: 579 aaaagacacgcagcaaattaataaaacgaatggaaaaggt 618
| || ||||| |||||| ||||||| ||| ||||||||||
Sbjct: 2673 agaaaacacgaagcaaaataataaagcgattggaaaaggt 2712
Score = 77.8 bits (39), Expect = 4e-11
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 106 gaaaggagcttacatgtttggccgaattgatctatgcgatttcatgctggagcatcccac 165
||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||
Sbjct: 177 gaaaggagcttacatgtttggtcgaattgatctttgcgattttgtattggagcatcccac 236
Query: 166 catttcccgttttca 180
||||| || |||||
Sbjct: 237 tatttctcgctttca 251
Score = 71.9 bits (36), Expect = 3e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 323 tcatcacgtctgtacattttccaaggaccatctgagctgatgcc 366
||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1661 tcatcacgtttgtacatattccaaggaccatctgagctgatgcc 1704
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 290 attcatgttggagatgtaattcgatttgggcagt 323
||||||||||||||||||||||||||||||||||
Sbjct: 1472 attcatgttggagatgtaattcgatttgggcagt 1505
Score = 42.1 bits (21), Expect = 2.3
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 621 ccaacatgaagaaagagatcgatgcaata 649
|||||||||||||||| || |||||||||
Sbjct: 3068 ccaacatgaagaaagaaattgatgcaata 3096
>dbj|AP003044.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0038C05
Length = 152941
Score = 151 bits (76), Expect = 3e-33
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 371 gaaaaagatatgcagaaactccgtgatgctaagattcggcaaaatctgcttgatcgtgaa 430
||||||||||||||||| || || ||||||| ||| |||| || ||||||||||||||
Sbjct: 143102 gaaaaagatatgcagaagcttcgggatgctagagttcagcaagatatgcttgatcgtgaa 143161
Query: 431 gcttcccttttacgagcgaaaactcaagcagctttagcagatgggatctcatggggtatg 490
|||||||||||||| || |||| |||||||||||||||||| || |||||||||||||||
Sbjct: 143162 gcttcccttttacgtgcaaaaaatcaagcagctttagcagagggtatctcatggggtatg 143221
Query: 491 tctgaggatgca 502
||||||||||||
Sbjct: 143222 tctgaggatgca 143233
Score = 99.6 bits (50), Expect = 1e-17
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 184 agttctgcagtttagaaacgatgggcaggttttcctttacgatcttggaagcacacatgg 243
|||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 141825 agttttgcagtttagaaatgatggggaggttttcctttatgatcttggaagcacacatgg 141884
Query: 244 ttcttccatcaacaaaactcag 265
|| | |||||| |||||||||
Sbjct: 141885 gtccttcatcaataaaactcag 141906
Score = 95.6 bits (48), Expect = 2e-16
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 519 aggatgaggcagatgagatcacgtggcaaacctacaaaggtcagcttacggacagacagg 578
||||||| || ||||||||||| |||||||||||||||||||| || || || |||||||
Sbjct: 143401 aggatgaagctgatgagatcacatggcaaacctacaaaggtcaactcactgatagacagg 143460
Query: 579 aaaagacacgcagcaaattaataaaacgaatggaaaaggt 618
| || ||||| |||||| ||||||| ||| ||||||||||
Sbjct: 143461 agaaaacacgaagcaaaataataaagcgattggaaaaggt 143500
Score = 77.8 bits (39), Expect = 4e-11
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 106 gaaaggagcttacatgtttggccgaattgatctatgcgatttcatgctggagcatcccac 165
||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||
Sbjct: 140965 gaaaggagcttacatgtttggtcgaattgatctttgcgattttgtattggagcatcccac 141024
Query: 166 catttcccgttttca 180
||||| || |||||
Sbjct: 141025 tatttctcgctttca 141039
Score = 73.8 bits (37), Expect = 6e-10
Identities = 80/93 (86%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 10 tacgccatccccgactggnagcgccggcccggaacaccccttcttcctcgaggtgctcaa 69
|||||||| ||||| ||| ||||||| |||| |||||||||||||||||||| |||||
Sbjct: 140700 tacgccatacccgagtgg-agcgccgcaccgggccaccccttcttcctcgaggttctcaa 140758
Query: 70 ggaaggcctcatcgtcgaaaagcttgacgtgtc 102
||| ||| |||||| || ||||||||||||||
Sbjct: 140759 ggacggcaccatcgttgacaagcttgacgtgtc 140791
Score = 71.9 bits (36), Expect = 3e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 323 tcatcacgtctgtacattttccaaggaccatctgagctgatgcc 366
||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 142449 tcatcacgtttgtacatattccaaggaccatctgagctgatgcc 142492
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 290 attcatgttggagatgtaattcgatttgggcagt 323
||||||||||||||||||||||||||||||||||
Sbjct: 142260 attcatgttggagatgtaattcgatttgggcagt 142293
Score = 42.1 bits (21), Expect = 2.3
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 621 ccaacatgaagaaagagatcgatgcaata 649
|||||||||||||||| || |||||||||
Sbjct: 143856 ccaacatgaagaaagaaattgatgcaata 143884
>emb|CT573071.1 | Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5)
Length = 2199546
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 598 aataaaacgaatggaaaagg 617
||||||||||||||||||||
Sbjct: 700025 aataaaacgaatggaaaagg 700044
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,900,015
Number of Sequences: 3902068
Number of extensions: 5900015
Number of successful extensions: 109839
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109637
Number of HSP's gapped (non-prelim): 202
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)