ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal5o12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 121 bits (61), Expect = 3e-24 Identities = 158/189 (83%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 60505 ttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgcg 60447 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 | ||||| ||| | || ||||||| | | | ||||||| || |||||| |||| || Sbjct: 60446 gcgagggagcgcgcggtggctctgcctcaaggtcctcagcgccgcctgcctcgtcgtctc 60387 Query: 134 catcgccgccgcagcgggctccatcgccaacgttatcgaagcgctcaaagtgtacaagcc 193 | |||||||||| || |||||||||||| |||| |||| |||||||| |||||| ||| Sbjct: 60386 cgtcgccgccgccgccggctccatcgccgacgtggtcgacgcgctcaaggtgtaccggcc 60327 Query: 194 gttcagcgg 202 ||||||||| Sbjct: 60326 gttcagcgg 60318
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 3e-24 Identities = 158/189 (83%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4771169 ttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgcg 4771227 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 | ||||| ||| | || ||||||| | | | ||||||| || |||||| |||| || Sbjct: 4771228 gcgagggagcgcgcggtggctctgcctcaaggtcctcagcgccgcctgcctcgtcgtctc 4771287 Query: 134 catcgccgccgcagcgggctccatcgccaacgttatcgaagcgctcaaagtgtacaagcc 193 | |||||||||| || |||||||||||| |||| |||| |||||||| |||||| ||| Sbjct: 4771288 cgtcgccgccgccgccggctccatcgccgacgtggtcgacgcgctcaaggtgtaccggcc 4771347 Query: 194 gttcagcgg 202 ||||||||| Sbjct: 4771348 gttcagcgg 4771356
>dbj|AK104370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E06, full insert sequence Length = 1707 Score = 121 bits (61), Expect = 3e-24 Identities = 158/189 (83%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1355 ttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgcg 1413 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 | ||||| ||| | || ||||||| | | | ||||||| || |||||| |||| || Sbjct: 1414 gcgagggagcgcgcggtggctctgcctcaaggtcctcagcgccgcctgcctcgtcgtctc 1473 Query: 134 catcgccgccgcagcgggctccatcgccaacgttatcgaagcgctcaaagtgtacaagcc 193 | |||||||||| || |||||||||||| |||| |||| |||||||| |||||| ||| Sbjct: 1474 cgtcgccgccgccgccggctccatcgccgacgtggtcgacgcgctcaaggtgtaccggcc 1533 Query: 194 gttcagcgg 202 ||||||||| Sbjct: 1534 gttcagcgg 1542
>dbj|AK068003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H02, full insert sequence Length = 1781 Score = 121 bits (61), Expect = 3e-24 Identities = 158/189 (83%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1342 ttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgcg 1400 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 | ||||| ||| | || ||||||| | | | ||||||| || |||||| |||| || Sbjct: 1401 gcgagggagcgcgcggtggctctgcctcaaggtcctcagcgccgcctgcctcgtcgtctc 1460 Query: 134 catcgccgccgcagcgggctccatcgccaacgttatcgaagcgctcaaagtgtacaagcc 193 | |||||||||| || |||||||||||| |||| |||| |||||||| |||||| ||| Sbjct: 1461 cgtcgccgccgccgccggctccatcgccgacgtggtcgacgcgctcaaggtgtaccggcc 1520 Query: 194 gttcagcgg 202 ||||||||| Sbjct: 1521 gttcagcgg 1529
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 3e-24 Identities = 158/189 (83%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4789953 ttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgcg 4790011 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 | ||||| ||| | || ||||||| | | | ||||||| || |||||| |||| || Sbjct: 4790012 gcgagggagcgcgcggtggctctgcctcaaggtcctcagcgccgcctgcctcgtcgtctc 4790071 Query: 134 catcgccgccgcagcgggctccatcgccaacgttatcgaagcgctcaaagtgtacaagcc 193 | |||||||||| || |||||||||||| |||| |||| |||||||| |||||| ||| Sbjct: 4790072 cgtcgccgccgccgccggctccatcgccgacgtggtcgacgcgctcaaggtgtaccggcc 4790131 Query: 194 gttcagcgg 202 ||||||||| Sbjct: 4790132 gttcagcgg 4790140
>gb|BT009014.1| Triticum aestivum clone wdk3c.pk006.d6:fis, full insert mRNA sequence Length = 1785 Score = 105 bits (53), Expect = 2e-19 Identities = 159/193 (82%), Gaps = 1/193 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1348 ttctggccactcaccgtctacttccccgtcgag-atgtacatcgtgcagcgcggcgtgcg 1406 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 || ||||||||| | || | ||||| ||||||||||| || |||||| ||||||| Sbjct: 1407 acgggggagcacgcggtgggtttgcctccagatgctcagcgccgcctgcctcgtcgtgtc 1466 Query: 134 catcgccgccgcagcgggctccatcgccaacgttatcgaagcgctcaaagtgtacaagcc 193 | | |||||||| || || ||||| ||| |||| |||| | |||||| | |||| ||| Sbjct: 1467 cgtggccgccgcggccgggtccattgccgacgtcatcggcgagctcaaggagtaccggcc 1526 Query: 194 gttcagcggctga 206 ||||||||||||| Sbjct: 1527 gttcagcggctga 1539
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4144113 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 4144055 Query: 73 c 73 | Sbjct: 4144054 c 4144054 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| |||||| Sbjct: 4144007 tgcctcgtcgtctccatcgccgccgccgcgggctccattgctgacgtcatcgacgcgctc 4143948 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| |||||||||||| ||||| Sbjct: 4143947 aaggtgtacaggccgttcagcggatgatt 4143919 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4121468 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 4121526 Query: 73 c 73 | Sbjct: 4121527 c 4121527 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| || ||| Sbjct: 4121574 tgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctc 4121633 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| ||||||||||| ||||| Sbjct: 4121634 aaggtgtacagaccgttcagcggatgatt 4121662 Score = 56.0 bits (28), Expect = 1e-04 Identities = 53/60 (88%), Gaps = 1/60 (1%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||| Sbjct: 4892338 cttctggccgctcaccgtctacctccccacggag-atgtacatcgcgcagcgcggcgtgc 4892280 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccc 39 ||||||||||||||| ||||||||||||| Sbjct: 4883362 ggcttctggccgctctccgtctacttccc 4883390
>dbj|AK106090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence Length = 1715 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1331 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 1389 Query: 73 c 73 | Sbjct: 1390 c 1390 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| || ||| Sbjct: 1437 tgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctc 1496 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| ||||||||||| ||||| Sbjct: 1497 aaggtgtacagaccgttcagcggatgatt 1525
>dbj|AK105784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G09, full insert sequence Length = 1773 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| |||||| Sbjct: 1415 tgcctcgtcgtctccatcgccgccgccgcgggctccattgctgacgtcatcgacgcgctc 1474 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| |||||||||||| ||||| Sbjct: 1475 aaggtgtacaggccgttcagcggatgatt 1503 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1309 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 1367 Query: 73 c 73 | Sbjct: 1368 c 1368
>dbj|AK099164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O03, full insert sequence Length = 1709 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1334 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 1392 Query: 73 c 73 | Sbjct: 1393 c 1393 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| || ||| Sbjct: 1440 tgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctc 1499 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| ||||||||||| ||||| Sbjct: 1500 aaggtgtacagaccgttcagcggatgatt 1528
>dbj|AK061470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence Length = 1797 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| |||||| Sbjct: 1417 tgcctcgtcgtctccatcgccgccgccgcgggctccattgctgacgtcatcgacgcgctc 1476 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| |||||||||||| ||||| Sbjct: 1477 aaggtgtacaggccgttcagcggatgatt 1505 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1311 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 1369 Query: 73 c 73 | Sbjct: 1370 c 1370
>dbj|AK061448.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E03, full insert sequence Length = 1725 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1332 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 1390 Query: 73 c 73 | Sbjct: 1391 c 1391 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| || ||| Sbjct: 1438 tgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctc 1497 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| ||||||||||| ||||| Sbjct: 1498 aaggtgtacagaccgttcagcggatgatt 1526
>dbj|AK061444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C11, full insert sequence Length = 1662 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| |||||| Sbjct: 1415 tgcctcgtcgtctccatcgccgccgccgcgggctccattgctgacgtcatcgacgcgctc 1474 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| |||||||||||| ||||| Sbjct: 1475 aaggtgtacaggccgttcagcggatgatt 1503 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 1309 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 1367 Query: 73 c 73 | Sbjct: 1368 c 1368
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4144100 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 4144042 Query: 73 c 73 | Sbjct: 4144041 c 4144041 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| |||||| Sbjct: 4143994 tgcctcgtcgtctccatcgccgccgccgcgggctccattgctgacgtcatcgacgcgctc 4143935 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| |||||||||||| ||||| Sbjct: 4143934 aaggtgtacaggccgttcagcggatgatt 4143906 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4121455 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 4121513 Query: 73 c 73 | Sbjct: 4121514 c 4121514 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| || ||| Sbjct: 4121561 tgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctc 4121620 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| ||||||||||| ||||| Sbjct: 4121621 aaggtgtacagaccgttcagcggatgatt 4121649 Score = 56.0 bits (28), Expect = 1e-04 Identities = 53/60 (88%), Gaps = 1/60 (1%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||| Sbjct: 4892320 cttctggccgctcaccgtctacctccccacggag-atgtacatcgcgcagcgcggcgtgc 4892262 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccc 39 ||||||||||||||| ||||||||||||| Sbjct: 4883344 ggcttctggccgctctccgtctacttccc 4883372
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 86509 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 86451 Query: 73 c 73 | Sbjct: 86450 c 86450 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| |||||| Sbjct: 86403 tgcctcgtcgtctccatcgccgccgccgcgggctccattgctgacgtcatcgacgcgctc 86344 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| |||||||||||| ||||| Sbjct: 86343 aaggtgtacaggccgttcagcggatgatt 86315 Score = 89.7 bits (45), Expect = 9e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 63864 cttctggccgctcaccgtctacttccccgtcgag-atgtacatcgcgcagcgcggcgtgc 63922 Query: 73 c 73 | Sbjct: 63923 c 63923 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 120 tgcctcatcgtgtccatcgccgccgcagcgggctccatcgccaacgttatcgaagcgctc 179 |||||| |||| |||||||||||||| ||||||||||| || |||| ||||| || ||| Sbjct: 63970 tgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctc 64029 Query: 180 aaagtgtacaagccgttcagcggctgatt 208 || ||||||| ||||||||||| ||||| Sbjct: 64030 aaggtgtacagaccgttcagcggatgatt 64058
>ref|XM_472988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 79.8 bits (40), Expect = 9e-12 Identities = 122/148 (82%), Gaps = 1/148 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||| Sbjct: 1270 ttctggccgctcaccgtctacttccccgtggag-atgtacatcgcgcagcgccgggtgcc 1328 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 || ||||| ||||| || | | ||| | |||||||| ||| |||||| ||||||| Sbjct: 1329 gcgggggagcgcgcagtggctgtccctccaggcgctcagcgccgggtgcctcgtcgtgtc 1388 Query: 134 catcgccgccgcagcgggctccatcgcc 161 | |||||||| | ||||| ||||||||| Sbjct: 1389 cgtcgccgcctcggcgggatccatcgcc 1416
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 79.8 bits (40), Expect = 9e-12 Identities = 122/148 (82%), Gaps = 1/148 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||| Sbjct: 70925 ttctggccgctcaccgtctacttccccgtggag-atgtacatcgcgcagcgccgggtgcc 70983 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 || ||||| ||||| || | | ||| | |||||||| ||| |||||| ||||||| Sbjct: 70984 gcgggggagcgcgcagtggctgtccctccaggcgctcagcgccgggtgcctcgtcgtgtc 71043 Query: 134 catcgccgccgcagcgggctccatcgcc 161 | |||||||| | ||||| ||||||||| Sbjct: 71044 cgtcgccgcctcggcgggatccatcgcc 71071
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 79.8 bits (40), Expect = 9e-12 Identities = 122/148 (82%), Gaps = 1/148 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||| Sbjct: 24511294 ttctggccgctcaccgtctacttccccgtggag-atgtacatcgcgcagcgccgggtgcc 24511352 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 || ||||| ||||| || | | ||| | |||||||| ||| |||||| ||||||| Sbjct: 24511353 gcgggggagcgcgcagtggctgtccctccaggcgctcagcgccgggtgcctcgtcgtgtc 24511412 Query: 134 catcgccgccgcagcgggctccatcgcc 161 | |||||||| | ||||| ||||||||| Sbjct: 24511413 cgtcgccgcctcggcgggatccatcgcc 24511440 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgt 42 ||||||||||||| || ||||||||||||| Sbjct: 23488664 cttctggccgctcgccatctacttccccgt 23488635 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgag 46 |||||||||||| || ||||| ||||||||||| Sbjct: 33697672 ttctggccgctcgccatctacctccccgtcgag 33697704
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 79.8 bits (40), Expect = 9e-12 Identities = 122/148 (82%), Gaps = 1/148 (0%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgcc 73 ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||| Sbjct: 104616 ttctggccgctcaccgtctacttccccgtggag-atgtacatcgcgcagcgccgggtgcc 104674 Query: 74 cgggaggagcacgcaggggatctgccttaggatgctcagcgtcggatgcctcatcgtgtc 133 || ||||| ||||| || | | ||| | |||||||| ||| |||||| ||||||| Sbjct: 104675 gcgggggagcgcgcagtggctgtccctccaggcgctcagcgccgggtgcctcgtcgtgtc 104734 Query: 134 catcgccgccgcagcgggctccatcgcc 161 | |||||||| | ||||| ||||||||| Sbjct: 104735 cgtcgccgcctcggcgggatccatcgcc 104762
>ref|XM_463785.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1814 Score = 75.8 bits (38), Expect = 1e-10 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1459 ggcttctggccgctcaccgtctacttccccgtcgag-atgtacatc 1503
>ref|XM_463528.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 104 gatgctcagcgtcggatgcctcatcgtgtccatcgccgccgcagcgggctccatcgcc 161 ||||||||||||||| |||||| || | |||||||||||||| ||||||||||||||| Sbjct: 1362 gatgctcagcgtcggctgcctcgtcatctccatcgccgccgccgcgggctccatcgcc 1419 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgt 42 ||||||||||||||||||||||||||||| Sbjct: 1273 ttctggccgctcaccgtctacttccccgt 1301
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 1e-10 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 121329 ggcttctggccgctcaccgtctacttccccgtcgag-atgtacatc 121373
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 104 gatgctcagcgtcggatgcctcatcgtgtccatcgccgccgcagcgggctccatcgcc 161 ||||||||||||||| |||||| || | |||||||||||||| ||||||||||||||| Sbjct: 38304182 gatgctcagcgtcggctgcctcgtcatctccatcgccgccgccgcgggctccatcgcc 38304125 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 14 ttctggccgctcaccgtctacttccccgt 42 ||||||||||||||||||||||||||||| Sbjct: 38304271 ttctggccgctcaccgtctacttccccgt 38304243
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 104 gatgctcagcgtcggatgcctcatcgtgtccatcgccgccgcagcgggctccatcgcc 161 ||||||||||||||| |||||| || | |||||||||||||| ||||||||||||||| Sbjct: 65007 gatgctcagcgtcggctgcctcgtcatctccatcgccgccgccgcgggctccatcgcc 64950 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 14 ttctggccgctcaccgtctacttccccgt 42 ||||||||||||||||||||||||||||| Sbjct: 65096 ttctggccgctcaccgtctacttccccgt 65068
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 75.8 bits (38), Expect = 1e-10 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 115938 ggcttctggccgctcaccgtctacttccccgtcgag-atgtacatc 115982
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 75.8 bits (38), Expect = 1e-10 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 70356 ggcttctggccgctcaccgtctacttccccgtcgag-atgtacatc 70400
>dbj|AK060685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G03, full insert sequence Length = 1835 Score = 75.8 bits (38), Expect = 1e-10 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1480 ggcttctggccgctcaccgtctacttccccgtcgag-atgtacatc 1524
>dbj|AK059325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence Length = 1858 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 104 gatgctcagcgtcggatgcctcatcgtgtccatcgccgccgcagcgggctccatcgcc 161 ||||||||||||||| |||||| || | |||||||||||||| ||||||||||||||| Sbjct: 1522 gatgctcagcgtcggctgcctcgtcatctccatcgccgccgccgcgggctccatcgcc 1579 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgt 42 ||||||||||||||||||||||||||||| Sbjct: 1433 ttctggccgctcaccgtctacttccccgt 1461
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 69.9 bits (35), Expect = 9e-09 Identities = 48/51 (94%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcg 64 ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct: 20865621 ttctggccgctcaccgtcttcttccccgtcgag-atgtacatccggcagcg 20865670 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 ||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 6693594 ttctggccgctcaccgtgtacttccccgtggag-atgtacatc 6693553
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 69.9 bits (35), Expect = 9e-09 Identities = 48/51 (94%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcg 64 ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct: 120296 ttctggccgctcaccgtcttcttccccgtcgag-atgtacatccggcagcg 120345
>ref|XM_476538.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1708 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 1358 cttctggccgctcaccgtctacttccccgtc 1388
>ref|XM_476539.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1775 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 1233 cttctggccgctcaccgtctacttccccgtc 1263
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 1821538 cttctggccgctcaccgtctacttccccgtc 1821508
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 26117 cttctggccgctcaccgtctacttccccgtc 26087
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 73757 cttctggccgctcaccgtctacttccccgtc 73727
>dbj|AK120257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046A03, full insert sequence Length = 1870 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 1360 cttctggccgctcaccgtctacttccccgtc 1390
>dbj|AK106110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D09, full insert sequence Length = 1708 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 1358 cttctggccgctcaccgtctacttccccgtc 1388
>dbj|AK103862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149D13, full insert sequence Length = 1774 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 1232 cttctggccgctcaccgtctacttccccgtc 1262
>dbj|AK058572.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E09, full insert sequence Length = 714 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtc 43 ||||||||||||||||||||||||||||||| Sbjct: 379 cttctggccgctcaccgtctacttccccgtc 409
>gb|BT009124.1| Triticum aestivum clone wl1n.pk0014.c11:fis, full insert mRNA sequence Length = 1376 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttcccc 40 |||||||||||||||||||||||||||| Sbjct: 739 cttctggccgctcaccgtctacttcccc 766
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 56.0 bits (28), Expect = 1e-04 Identities = 53/60 (88%), Gaps = 1/60 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||| Sbjct: 46084 cttctggccgctcaccgtctacctccccacggag-atgtacatcgcgcagcgcggcgtgc 46142 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 11 ggcttctggccgctcaccgtctacttccc 39 ||||||||||||||| ||||||||||||| Sbjct: 55060 ggcttctggccgctctccgtctacttccc 55032
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 56.0 bits (28), Expect = 1e-04 Identities = 53/60 (88%), Gaps = 1/60 (1%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgtcgagnatgtacatcaggcagcgcggcgtgc 72 |||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||| Sbjct: 67621 cttctggccgctcaccgtctacctccccacggag-atgtacatcgcgcagcgcggcgtgc 67679 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 11 ggcttctggccgctcaccgtctacttccc 39 ||||||||||||||| ||||||||||||| Sbjct: 76597 ggcttctggccgctctccgtctacttccc 76569
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 58510 ttctggccgctcaccgtctacttcccggtggag-atgtacatc 58551
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 20636470 ttctggccgctcaccgtctacttcccggtggag-atgtacatc 20636511
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 ||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 127720 ttctggccgctcaccgtgtacttccccgtggag-atgtacatc 127679
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 ||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 23273 ttctggccgctcaccgtgtacttccccgtggag-atgtacatc 23232
>dbj|AK106762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E07, full insert sequence Length = 1726 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 ||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 1386 ttctggccgctcaccgtgtacttccccgtggag-atgtacatc 1427
>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence Length = 1975 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgagnatgtacatc 56 |||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 1408 ttctggccgctcaccgtctacttcccggtggag-atgtacatc 1449
>dbj|AK069508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L23, full insert sequence Length = 1819 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 ggcttctggccgctcaccgtctacttccc 39 ||||||||||||||| ||||||||||||| Sbjct: 1296 ggcttctggccgctctccgtctacttccc 1324
>gb|AC013406.7| Homo sapiens BAC clone RP11-341F20 from 2, complete sequence Length = 190018 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 265 ataattatttacatacaaaggaagtag 291 |||||||| |||||||||||||||||| Sbjct: 127588 ataattatgtacatacaaaggaagtag 127562
>emb|BX571879.8| Zebrafish DNA sequence from clone DKEY-238C7 in linkage group 18, complete sequence Length = 252198 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 256 aaaacaactataattatttacat 278 ||||||||||||||||||||||| Sbjct: 233687 aaaacaactataattatttacat 233709
>emb|CR318588.10| Zebrafish DNA sequence from clone DKEYP-1H4 in linkage group 18, complete sequence Length = 179350 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 256 aaaacaactataattatttacat 278 ||||||||||||||||||||||| Sbjct: 71202 aaaacaactataattatttacat 71224
>ref|XM_472826.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgt 42 ||||||||||||| || ||||||||||||| Sbjct: 1227 cttctggccgctcgccatctacttccccgt 1256
>gb|AF339024.1| Fragaria x ananassa pectate lyase B gene, partial cds Length = 5368 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 253 ttgaaaacaactataattattt 274 |||||||||||||||||||||| Sbjct: 2693 ttgaaaacaactataattattt 2672
>dbj|AK071044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F09, full insert sequence Length = 1809 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 13 cttctggccgctcaccgtctacttccccgt 42 ||||||||||||| || ||||||||||||| Sbjct: 1335 cttctggccgctcgccatctacttccccgt 1364
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 13 cttctggccgctcaccgtctacttccccgt 42 ||||||||||||| || ||||||||||||| Sbjct: 44567 cttctggccgctcgccatctacttccccgt 44538
>ref|XM_474206.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgag 46 |||||||||||| || ||||| ||||||||||| Sbjct: 1237 ttctggccgctcgccatctacctccccgtcgag 1269
>emb|Z68694.1|HSCU177E8 Human DNA sequence from clone LL0XNC01-177E8 on chromosome X Contains the gene for a novel protein, a guanosine monophosphate reductase (GMPR) pseudogene and the gene for a novel protein (MGC45400), complete sequence Length = 40822 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 gcctttggttgcattttcttg 407 ||||||||||||||||||||| Sbjct: 30294 gcctttggttgcattttcttg 30314
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgag 46 |||||||||||| || ||||| ||||||||||| Sbjct: 128732 ttctggccgctcgccatctacctccccgtcgag 128764
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgag 46 |||||||||||| || ||||| ||||||||||| Sbjct: 48115 ttctggccgctcgccatctacctccccgtcgag 48147
>emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in linkage group 1, complete sequence Length = 210511 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 250 tagttgaaaacaactataattatttacat 278 |||||||||||||||||| ||||||||| Sbjct: 110669 tagttgaaaacaactatagatatttacat 110697
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 ttctggccgctcaccgtctacttccccgtcgag 46 |||||||||||| || ||||| ||||||||||| Sbjct: 128850 ttctggccgctcgccatctacctccccgtcgag 128882
>gb|AC021351.4|AC021351 Homo sapiens, clone RP11-24N21, complete sequence Length = 164291 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 513 taattctgtaccggaggaaaaaaca 537 |||||||||||| |||||||||||| Sbjct: 35386 taattctgtacctgaggaaaaaaca 35410
>gb|AC129065.3| Didelphis virginiana clone LB3-118L8, complete sequence Length = 166731 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 497 ctttgtgaagggattctaatt 517 ||||||||||||||||||||| Sbjct: 78133 ctttgtgaagggattctaatt 78153
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 497 ctttgtgaagggattctaatt 517 ||||||||||||||||||||| Sbjct: 1663196 ctttgtgaagggattctaatt 1663216
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 atacatacattacatacacc 326 |||||||||||||||||||| Sbjct: 37167 atacatacattacatacacc 37186
>gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 aaaacaactataattattta 275 |||||||||||||||||||| Sbjct: 14657 aaaacaactataattattta 14638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 atacatacattacatacacc 326 |||||||||||||||||||| Sbjct: 26389127 atacatacattacatacacc 26389146
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 atacatacattacatacacc 326 |||||||||||||||||||| Sbjct: 1513 atacatacattacatacacc 1494
>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence Length = 199993 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ctttggttgcattttcttgg 408 |||||||||||||||||||| Sbjct: 126888 ctttggttgcattttcttgg 126869
>emb|AL139404.9| Human DNA sequence from clone RP11-376D11 on chromosome 10 Contains the 5' end of the SSH3BP gene for spectrin SH3 domain binding protein 1, complete sequence Length = 122913 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 atttacatacaaaggaagta 290 |||||||||||||||||||| Sbjct: 19583 atttacatacaaaggaagta 19602
>gb|AC092366.3| Homo sapiens chromosome 5 clone RP11-461C13, complete sequence Length = 158230 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 tacatacaaaggaagtagttataa 297 ||||||||||| |||||||||||| Sbjct: 85962 tacatacaaagaaagtagttataa 85939
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 aaaacaactataattattta 275 |||||||||||||||||||| Sbjct: 3879 aaaacaactataattattta 3898
>tpg|BK004878.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 9 (GRF9) gene, complete cds Length = 5610 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 atacatacattacatacacc 326 |||||||||||||||||||| Sbjct: 2667 atacatacattacatacacc 2686
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 atacatacattacatacacc 326 |||||||||||||||||||| Sbjct: 26480436 atacatacattacatacacc 26480455
>gb|AC149155.3| Xenopus tropicalis clone ISB-242B17, complete sequence Length = 94528 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 tgcaatacatacattacata 322 |||||||||||||||||||| Sbjct: 52696 tgcaatacatacattacata 52715
>gb|AC008873.4|AC008873 Homo sapiens chromosome 5 clone CTD-2199H11, complete sequence Length = 170358 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 tacatacaaaggaagtagttataa 297 ||||||||||| |||||||||||| Sbjct: 162712 tacatacaaagaaagtagttataa 162689
>emb|AJ489921.1|SMA489921 Sebaea madagascariensis nuclear ITS1, 5.8S rRNA gene and ITS2, specimen voucher Piso, Wohlhauser, Zeltner M018 (NEU) Length = 632 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cgcggcgtgcccgggaggagcacg 86 |||||||||| ||||||||||||| Sbjct: 188 cgcggcgtgcgcgggaggagcacg 211
>emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in linkage group 22, complete sequence Length = 141779 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 atacatacattacatacacc 326 |||||||||||||||||||| Sbjct: 40270 atacatacattacatacacc 40289
>emb|CR388051.22| Zebrafish DNA sequence from clone CH211-239B6 in linkage group 15, complete sequence Length = 120027 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aatacatacattacatacac 325 |||||||||||||||||||| Sbjct: 150 aatacatacattacatacac 131
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 aaaacaactataattattta 275 |||||||||||||||||||| Sbjct: 244347 aaaacaactataattattta 244328
>gb|AC004252.1|AC004252 Drosophila melanogaster (P1 DS09121 (D88)) DNA sequence, complete sequence Length = 59498 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 aaaacaactataattattta 275 |||||||||||||||||||| Sbjct: 52001 aaaacaactataattattta 52020
>emb|CR524482.18| Zebrafish DNA sequence from clone DKEY-109F24 in linkage group 15, complete sequence Length = 125769 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aatacatacattacatacac 325 |||||||||||||||||||| Sbjct: 123919 aatacatacattacatacac 123900
>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence Length = 231400 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 atctgccttaggatgctcag 112 |||||||||||||||||||| Sbjct: 15240 atctgccttaggatgctcag 15259
>emb|AL731801.11| Mouse DNA sequence from clone RP23-181L15 on chromosome X, complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gaaaggcccttgttgaacct 360 |||||||||||||||||||| Sbjct: 71524 gaaaggcccttgttgaacct 71543
>gb|M26533.1|RATRSKG5 R.norvegicus tonin (RSKG-5) gene, complete cds Length = 15433 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aggagcacgcaggggatctg 97 |||||||||||||||||||| Sbjct: 11401 aggagcacgcaggggatctg 11382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,145,680 Number of Sequences: 3902068 Number of extensions: 4145680 Number of successful extensions: 88056 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87392 Number of HSP's gapped (non-prelim): 641 length of query: 575 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 552 effective length of database: 17,143,297,704 effective search space: 9463100332608 effective search space used: 9463100332608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
