ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal5o05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 174 bits (88), Expect = 2e-40 Identities = 148/168 (88%) Strand = Plus / Plus Query: 104 gatggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcaggcct 163 |||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| | Sbjct: 150 gatggcgatgcagacggggttcgccacctccaaggtcctcatcctcgtcggcgcagggtt 209 Query: 164 gacggggtcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccagga 223 |||| | ||||||||||| ||||||||||| || || || || ||||||||||| ||||| Sbjct: 210 gacgagctcgatcgtgctgcggaatggccggctatctgacgtgttggcggagcttcagga 269 Query: 224 gctcatgaagggcgtaaatcaaggagaaggttcgagcgcctatgacat 271 ||| ||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct: 270 gcttatgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacat 317 Score = 46.1 bits (23), Expect = 0.14 Identities = 101/127 (79%) Strand = Plus / Plus Query: 281 ccaagtttttccaagaagcggatgaaaaactcaagctcttggacctggctcaaactgaaa 340 |||||||||| || ||||| ||||||||||||||||| || ||||||| |||||| Sbjct: 857 ccaagttttttcaggaagctaatgaaaaactcaagctcacagagttggctcagtctgaaa 916 Query: 341 agaagccggtgaagggtctcgaattgtttctggagagcaccaaggaggtaaaggcactcg 400 ||| | |||||||| || |||| |||||||||||| ||||| ||||||| ||| Sbjct: 917 gaaaggcagtgaaggggcttgaatctgttctggagagcagaaaggaacaaaaggcaatcg 976 Query: 401 actccaa 407 ||||||| Sbjct: 977 actccaa 983
>gb|AY104267.1| Zea mays PCO085704 mRNA sequence Length = 1009 Score = 127 bits (64), Expect = 5e-26 Identities = 124/144 (86%) Strand = Plus / Plus Query: 105 atggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcaggcctg 164 ||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||| || Sbjct: 138 atggcgatgcagacgggggtcgcgacctccaaggtcctcatcctcgtcggtgcagggatg 197 Query: 165 acggggtcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccaggag 224 ||||| |||||| |||| |||||||||||| | || ||||| |||| || ||||||||| Sbjct: 198 acgggctcgatcctgctgcggaatggccgcttatctgatgtgttgggagaactccaggag 257 Query: 225 ctcatgaagggcgtaaatcaagga 248 | |||||||| |||||||||||| Sbjct: 258 attatgaagggtgtaaatcaagga 281
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 104 gatggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcagg 160 |||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 50463 gatggcgatgcagacggggttcgccacctccaaggtcctcatcctcgtcggcgcagg 50519 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 220 aggagctcatgaagggcgtaaatcaaggagaaggttcgagcgcctatgacat 271 ||||||| ||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct: 51130 aggagcttatgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacat 51181 Score = 48.1 bits (24), Expect = 0.035 Identities = 45/52 (86%) Strand = Plus / Plus Query: 171 tcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccagg 222 ||||||||||| ||||||||||| || || || || ||||||||||| |||| Sbjct: 50673 tcgatcgtgctgcggaatggccggctatctgacgtgttggcggagcttcagg 50724
>gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (GGA)X8, closest to marker C67A, genomic sequence Length = 224 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 104 gatggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcagg 160 |||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 203 gatggcgatgcagacggggttcgccacctccaaggtcctcatcctcgtcggcgcagg 147
>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence Length = 230236 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 386 aggtaaaggcactcgactccaagcct 411 ||||||||||||| |||||||||||| Sbjct: 193669 aggtaaaggcacttgactccaagcct 193694
>gb|AC122202.4| Mus musculus BAC clone RP23-68P6 from 19, complete sequence Length = 234448 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 55 cagaagcgagcgagagagagag 76 |||||||||||||||||||||| Sbjct: 62680 cagaagcgagcgagagagagag 62659
>emb|AL662892.11| Mouse DNA sequence from clone RP23-408L15 on chromosome 11 Contains part of a novel gene, a novel gene, a SMT3 (supressor of mif two, 3) homolog 1 (S. cerevisiae) (Smt3h1) pseudogene and a ribosomal protein S12 (Rps12) pseudogene, complete sequence Length = 106145 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 386 aggtaaaggcactcgactccaagcct 411 ||||||||||||| |||||||||||| Sbjct: 4131 aggtaaaggcacttgactccaagcct 4106
>gb|AC132331.3| Mus musculus BAC clone RP24-217D10 from chromosome 12, complete sequence Length = 176940 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 ggtaaaggcactcgactccaagcct 411 |||||||||||| |||||||||||| Sbjct: 14744 ggtaaaggcacttgactccaagcct 14768
>gb|AC124556.4| Mus musculus BAC clone RP23-246K11 from chromosome 12, complete sequence Length = 202214 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 ggtaaaggcactcgactccaagcct 411 |||||||||||| |||||||||||| Sbjct: 163602 ggtaaaggcacttgactccaagcct 163626
>gb|AE012064.1| Xanthomonas axonopodis pv. citri str. 306, section 442 of 469 of the complete genome Length = 10412 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ggcggcgcaagggcatggcga 105 ||||||||||||||||||||| Sbjct: 9929 ggcggcgcaagggcatggcga 9909
>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete sequence Length = 223547 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 ggtaaaggcactcgactccaagcct 411 |||||||||||| |||||||||||| Sbjct: 201278 ggtaaaggcacttgactccaagcct 201302
>emb|AL591884.11| Mouse DNA sequence from clone RP23-183N8 on chromosome 2, complete sequence Length = 204495 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 387 ggtaaaggcactcgactccaagcct 411 |||||||||||||| |||||||||| Sbjct: 61463 ggtaaaggcactcgcctccaagcct 61439
>ref|NM_015898.2| Homo sapiens zinc finger and BTB domain containing 7A (ZBTB7A), mRNA Length = 4456 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aagcgagcgagagagagagc 77 |||||||||||||||||||| Sbjct: 3225 aagcgagcgagagagagagc 3244
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gtcggcgcaggcctgacggg 169 |||||||||||||||||||| Sbjct: 3333828 gtcggcgcaggcctgacggg 3333847
>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0485F09, complete sequence Length = 161276 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttctagaaccttccagaagc 61 |||||||||||||||||||| Sbjct: 14436 ttctagaaccttccagaagc 14455
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaagcgagcgagagagagag 76 |||||||||||||||||||| Sbjct: 25790185 gaagcgagcgagagagagag 25790166
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gaagcgagcgagagagagag 76 |||||||||||||||||||| Sbjct: 54711 gaagcgagcgagagagagag 54730
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttctagaaccttccagaagc 61 |||||||||||||||||||| Sbjct: 134558 ttctagaaccttccagaagc 134577
>emb|BX927112.16| Zebrafish DNA sequence from clone DKEY-109M11 in linkage group 1, complete sequence Length = 131888 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaagcgagcgagagagagag 76 |||||||||||||||||||| Sbjct: 84408 gaagcgagcgagagagagag 84389
>ref|XM_381375.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG01199.1) partial mRNA Length = 2070 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 gagctccaggagctcatgaagggc 236 |||||||||||| ||||||||||| Sbjct: 958 gagctccaggagatcatgaagggc 981
>emb|CR727815.2|CNS0GOJ1 Tetraodon nigroviridis full-length cDNA Length = 1170 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 aagaaaccgacgaaaacgtt 455 |||||||||||||||||||| Sbjct: 345 aagaaaccgacgaaaacgtt 364
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 565 ttgcattcttgcttgctttgtttg 588 |||| ||||||||||||||||||| Sbjct: 70897 ttgctttcttgcttgctttgtttg 70874
>ref|NM_007375.3| Homo sapiens TAR DNA binding protein (TARDBP), mRNA Length = 4236 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccgcctcctccccccgccca 25 |||||||||||||||||||| Sbjct: 22 ccgcctcctccccccgccca 3
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 565 ttgcattcttgcttgctttgtttgatag 592 |||| |||||||||||||| |||||||| Sbjct: 95856 ttgctttcttgcttgctttctttgatag 95829
>emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chromosome 13 Contains 3 novel genes, a meningioma-expressed antigen 6/11 (MEA6) (MEA11) pseudogene and the 3' end of the ATP7B gene for ATPase, Cu++ transporting, beta polypeptide (Wilson disease), complete sequence Length = 169104 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gtaaagaaggcctcgtgctg 528 |||||||||||||||||||| Sbjct: 60643 gtaaagaaggcctcgtgctg 60624
>emb|AL109811.40|HSJ635E18 Human DNA sequence from clone RP4-635E18 on chromosome 1p36.11-36.31 Contains the TARDBP gene for TAR DNA binding protein, the MASP2 gene for mannan-binding lectin serine protease 2, the SRM gene for spermidine synthase, the PMSCL2 gene for 100kDa polymyositis/scleroderma autoantigen 2 (FLJ41371, FLJ36636, two novel genes (FLJ30609), the 3' end of the FRAP1 gene for FK506 binding protein 12-rapamycin associated protein 1 and a CpG island, complete sequence Length = 112769 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccgcctcctccccccgccca 25 |||||||||||||||||||| Sbjct: 8991 ccgcctcctccccccgccca 8972
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 588 gataggaaaatatagaagaa 607 |||||||||||||||||||| Sbjct: 1988667 gataggaaaatatagaagaa 1988686
>gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome 10, complete sequence Length = 206634 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tgcattcttgcttgctttgt 585 |||||||||||||||||||| Sbjct: 196513 tgcattcttgcttgctttgt 196494
>emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in linkage group 7 Contains three novel genes similar to cdh1 (epithelial cadherin 1), complete sequence Length = 99338 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 tttctggagagcaccaaggaggta 390 |||||||||||| ||||||||||| Sbjct: 2127 tttctggagagcgccaaggaggta 2150
>emb|AL929461.3| Zebrafish DNA sequence from clone BUSM1-180O5 in linkage group 7 Contains two novel genes similar to cdh1 (E-cadherin) and a novel gene for a DNA polymerase, complete sequence Length = 58622 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 tttctggagagcaccaaggaggta 390 |||||||||||| ||||||||||| Sbjct: 16722 tttctggagagcgccaaggaggta 16745
>emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071G03, complete sequence Length = 135169 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcgagcgagagagagagccc 79 |||||||||||||||||||| Sbjct: 40305 gcgagcgagagagagagccc 40286
>emb|BX897737.7| Zebrafish DNA sequence from clone CH211-200J6 in linkage group 7, complete sequence Length = 64259 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 tttctggagagcaccaaggaggta 390 |||||||||||| ||||||||||| Sbjct: 26243 tttctggagagcgccaaggaggta 26266
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 caagggcatggcgatggcga 111 |||||||||||||||||||| Sbjct: 630581 caagggcatggcgatggcga 630562
>tpg|BK005224.1| TPA: TPA_inf: Gibberella zeae glutamine:fructose-6-phosphate amidotransferase gene, complete cds Length = 2637 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 gagctccaggagctcatgaagggc 236 |||||||||||| ||||||||||| Sbjct: 1525 gagctccaggagatcatgaagggc 1548
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcgagcgagagagagagccc 79 |||||||||||||||||||| Sbjct: 12111755 gcgagcgagagagagagccc 12111736
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttctagaaccttccagaagc 61 |||||||||||||||||||| Sbjct: 25407545 ttctagaaccttccagaagc 25407564
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaagcgagcgagagagagag 76 |||||||||||||||||||| Sbjct: 25881494 gaagcgagcgagagagagag 25881475
>gb|AC147870.3| Monodelphis domestica clone VMRC6-297C9, complete sequence Length = 130886 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 gccaccgcctcctccccccgccca 25 |||||||||||| ||||||||||| Sbjct: 32083 gccaccgcctccaccccccgccca 32060
>emb|BX322631.8| Zebrafish DNA sequence from clone DKEY-173L11, complete sequence Length = 161710 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 tttctggagagcaccaaggaggta 390 |||||||||||| ||||||||||| Sbjct: 120641 tttctggagagcgccaaggaggta 120618
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12 Length = 87434 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ccagaagcgagcgagagaga 73 |||||||||||||||||||| Sbjct: 75439 ccagaagcgagcgagagaga 75420
>dbj|AK107318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E03, full insert sequence Length = 2605 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 gagctccaggagctcatgaagggc 236 |||||||||||| ||||||||||| Sbjct: 1256 gagctccaggagatcatgaagggc 1279
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggccaccgcctcctcccccc 20 |||||||||||||||||||| Sbjct: 193408 ggccaccgcctcctcccccc 193427
>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence Length = 211512 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ggccaccgcctcctccccccgccc 24 |||||||||||||||| ||||||| Sbjct: 39239 ggccaccgcctcctcctcccgccc 39216
>gb|AE003657.3| Drosophila melanogaster chromosome 2L, section 66 of 83 of the complete sequence Length = 265254 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggccaccgcctcctcccccc 20 |||||||||||||||||||| Sbjct: 104790 ggccaccgcctcctcccccc 104809
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttctagaaccttccagaagc 61 |||||||||||||||||||| Sbjct: 25726215 ttctagaaccttccagaagc 25726234
>gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, complete sequence Length = 167418 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 tgcattcttgcttgctttgt 585 |||||||||||||||||||| Sbjct: 52567 tgcattcttgcttgctttgt 52586
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 gccaccgcctcctccccccgccca 25 |||||||||||| ||||||||||| Sbjct: 1279761 gccaccgcctccaccccccgccca 1279738
>gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, complete sequence Length = 205642 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aagcgagcgagagagagagc 77 |||||||||||||||||||| Sbjct: 71471 aagcgagcgagagagagagc 71452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,130,466 Number of Sequences: 3902068 Number of extensions: 9130466 Number of successful extensions: 128331 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127827 Number of HSP's gapped (non-prelim): 497 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
