ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal6d03 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_THET8 (P48515) Translation initiation factor IF-2| Length = 571 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +3 Query: 252 AEAIKEAIKSAFGLRTRRAFWLEDEDEVVRSLDRDMPVGIYALHLDNGITIKL 410 AEA++E +K GL+ + A E+E +SL R PV + H+D+G T L Sbjct: 43 AEAVRELVKEQRGLQEKLA-----EEERRKSLPRRPPVVVIMGHVDHGKTTLL 90
>IF2_THET2 (Q72KE8) Translation initiation factor IF-2| Length = 571 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +3 Query: 252 AEAIKEAIKSAFGLRTRRAFWLEDEDEVVRSLDRDMPVGIYALHLDNGITIKL 410 AEA++E +K GL+ + A E+E +SL R PV + H+D+G T L Sbjct: 43 AEAVRELVKEQRGLQEKLA-----EEERRKSLPRRPPVVVIMGHVDHGKTTLL 90
>Y001_AGRT5 (Q8UJC7) UPF0085 protein Atu0001/AGR_C_5142| Length = 273 Score = 31.2 bits (69), Expect = 2.6 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 18/112 (16%) Frame = +3 Query: 21 LQFADKGFEDANIPFGP--------VEASHPIAL---TTADAVATNGVNPWNWRDTSTNG 167 + A++G + ANIP P A+ P+ + T+D ++ N RD T G Sbjct: 164 IYLANRGIKTANIPVVPNVPLPESLYAATRPLIVGLVATSDRISQVREN----RDLGTTG 219 Query: 168 GDNHGTYGGRVILVKWGDYTKRIG-------IDGTAEAIKEAIKSAFGLRTR 302 G + G Y R +++ Y + + ID T +I+E + LR R Sbjct: 220 GFDGGRYTDRATIMEELKYARALCARNNWPLIDVTRRSIEETAAAILALRPR 271
>EXG1_YEAST (P23776) Glucan 1,3-beta-glucosidase I/II precursor (EC 3.2.1.58)| (Exo-1,3-beta-glucanase I/II) (Soluble cell wall protein 6) Length = 448 Score = 30.8 bits (68), Expect = 3.4 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = +3 Query: 387 DNGITIK---LCTF--EDADRMTVRTEDKTFYTEDDFRDFLSRRGWTLLREYSGYRVADT 551 D GI + C + +D + +++ TFY E DF + S +G+ L+R GY T Sbjct: 83 DEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFANIAS-QGFNLVRIPIGYWAFQT 141 Query: 552 LDD 560 LDD Sbjct: 142 LDD 144
>GLGB_PROMP (Q7V299) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 754 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +3 Query: 297 TRRAFWLEDEDEVVRSLDRDMPVGIYALHLDNGITIKLCTFEDADRMTVRTEDKTFYT 470 T +A W++ E + + D P+ I H NG I +AD + + +DKT+ T Sbjct: 4 TIQADWIKSEAFNLENCCNDNPLNILGPHFVNGQWITRVWMPEADEVNIIFKDKTYKT 61
>PALH_MAGGR (Q52E66) pH-response regulator protein palH/RIM21| Length = 829 Score = 30.8 bits (68), Expect = 3.4 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +3 Query: 159 TNGGDNHGTYGGRVILVKWGDYTKRIGID-GTAEAIKEAIKS-AFGLRTRRAFWLEDEDE 332 T+GG HG GGR L K T I + TA+ K A + AFGL+ R E +D+ Sbjct: 142 TSGGSGHGIIGGRPWLQKVAALTVAISLTIATADTFKVAEQQYAFGLQNAR----ELQDK 197 Query: 333 VVRSLD 350 V+ + Sbjct: 198 VLNGTE 203
>ECTB_WOLSU (Q7M9K2) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 427 Score = 30.8 bits (68), Expect = 3.4 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = +3 Query: 237 GIDGTAEAIKEAIKSAFGLRTRRAFWLEDEDEVVRSLDRDMPVGIYALHLDNGITIKLCT 416 G+D A I E I++ G+ R WL ++V R D D+ + + + + NG T + + Sbjct: 192 GVDLPAAIILETIQAEGGVNVARDEWLRSVEKVCR--DFDILLIVDEIQVGNGRTGRFFS 249 Query: 417 FEDA 428 FE++ Sbjct: 250 FEES 253
>QCRB_CORGL (Q79VE9) Menaquinol-cytochrome c reductase cytochrome b subunit| (Cytochrome bc1 complex cytochrome b subunit) Length = 539 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = +3 Query: 12 GSYLQFADKGFEDANIPFGPVEA-SHPIALTTADAVATNGVNPWNWRDTSTNGG 170 G Q + F + + P GPV+ HPI L A A +N + + T GG Sbjct: 441 GIIKQMPNGAFIEVHQPLGPVDDHGHPIPLPYAGAAVPKQMNQLGYAEVETRGG 494
>Y1145_PYRAB (Q9UZK1) Hypothetical RNA methyltransferase PYRAB11450 (EC 2.1.1.-)| Length = 410 Score = 30.0 bits (66), Expect = 5.7 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +3 Query: 126 GVNPWNWRDTSTNGGDNHGTYGGRVILVKWGDYTKRIGIDGTAE---AIKEAIKSAFGLR 296 G+NPWNW++ GD H + V+ G +T + I+ A + +E + AFG Sbjct: 159 GLNPWNWKN-----GDVH------YLQVREGKFTGEVMINVIAHIPPSGREELTEAFGF- 206 Query: 297 TRRAFWLEDEDEVVRSLDRDMPVGIYAL 380 +W D+ RD P GI L Sbjct: 207 ADSVYWSLKRDK------RDDPKGIPTL 228
>XYLG_HAEIN (P45046) D-xylose transport ATP-binding protein xylG (EC 3.6.3.17)| Length = 503 Score = 30.0 bits (66), Expect = 5.7 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%) Frame = +3 Query: 318 EDEDEVVRSLDRDMPVG----IYALHLDN---GITIKLCTFEDADRMTVRTEDKTFYTED 476 E E E++ +L +D+ IY H N I+ K+C D + V T+D + TED Sbjct: 174 EKETEILLNLIKDLKAHNIACIYISHKLNEVKAISDKICVIRDGEH--VGTKDASTMTED 231 Query: 477 DFRDFLSRRGWTLLREYSGYRVADTL 554 D + R T L + + + D + Sbjct: 232 DIITMMVGREITSLYPHEPHEIKDEI 257
>OAZ_DROME (P54361) Ornithine decarboxylase antizyme (ODC-Az) (Protein| gutfeeling) Length = 254 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 17/100 (17%) Frame = -2 Query: 446 PDCHAVCIFECAEFDCYPIIKM-----------------KSVYSDWHVPVQGTNNLILIF 318 PD H++C ++ DC +++ + Y++W+ + NNL+ + Sbjct: 117 PDIHSLC----SDDDCQEVLRQILQHDQPVQITIKLHVTEDQYTNWNTILNPVNNLLYVA 172 Query: 317 KPKSASCS*SKGRFDGLFNCLSSTINTYSFSIVTPLD*DD 198 PK + SK F L + +V P D D Sbjct: 173 LPKDLPPAGSKQTFISLLEFAEEKLEVDGIVMVMPKDQPD 212
>PHF8_HUMAN (Q9UPP1) PHD finger protein 8| Length = 1060 Score = 29.6 bits (65), Expect = 7.5 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Frame = -2 Query: 428 CIFECAEFDCYPIIKMKSVYSDWHVPVQGTN---------NLILIFKPKSASCS*SKGRF 276 C+FE Y ++ ++ Y+D+H+ GT+ + + +P +A+ + Sbjct: 260 CVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLT------ 313 Query: 275 DGLFNCLSSTIN 240 LF C SS+ N Sbjct: 314 --LFECWSSSSN 323
>PHF8_MOUSE (Q80TJ7) PHD finger protein 8| Length = 1023 Score = 29.6 bits (65), Expect = 7.5 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Frame = -2 Query: 428 CIFECAEFDCYPIIKMKSVYSDWHVPVQGTN---------NLILIFKPKSASCS*SKGRF 276 C+FE Y ++ ++ Y+D+H+ GT+ + + +P +A+ + Sbjct: 224 CVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLT------ 277 Query: 275 DGLFNCLSSTIN 240 LF C SS+ N Sbjct: 278 --LFECWSSSSN 287
>DOCK8_HUMAN (Q8NF50) Dedicator of cytokinesis protein 8| Length = 2031 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 493 CHDVVGHSSGSIVATESLILWTIFVLARFTRG 588 CH V+ H S S+ T S T+++L RF+ G Sbjct: 1440 CHQVLHHCSSSMDVTRSQACATLYLLMRFSFG 1471
>Y1281_METJA (Q58677) Hypothetical protein MJ1281| Length = 1048 Score = 29.3 bits (64), Expect = 9.8 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Frame = +3 Query: 174 NHGTYGGRVILVKWGDYTKRIG--------------IDGTAEAIKEAIKSAFGLRTRRAF 311 N YGG +LV + + +G + G E + +AI L T Sbjct: 423 NEEYYGGATLLVYTTEVSDMVGKFAATNYKGYFIFGLKGGVEKVIDAINGKNNLVT---- 478 Query: 312 WLEDEDEVVRSLDRDMPVGIYALHLDNGITIKLCTF--EDADRMTVRTEDKTFYTEDDFR 485 EDE +R + +MP G +A L N F ++ D++ ++ + DD Sbjct: 479 ----EDENIREIINEMPKGYFAFKLYNQFDADGGEFYYDEGDKIVIK---GLWICIDD-- 529 Query: 486 DFLSRRGWTLLREYSGYRVAD 548 ++ +R + + +Y Y D Sbjct: 530 EYAKKRKYIIENDYENYGYTD 550
>IRPA_SYNP7 (P12608) Iron-regulated protein A precursor| Length = 356 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = -2 Query: 614 AGSIDK*AHPLVNRARTKIVQSISDSVATILPEE 513 AGS D A+P +N A T+IVQ + DS++ + E+ Sbjct: 206 AGSTDS-AYPTLNAAGTEIVQGLVDSLSEVASEK 238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,091,531 Number of Sequences: 219361 Number of extensions: 1674764 Number of successful extensions: 4375 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4375 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
