| Clone Name | baal6d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472947.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1158 Score = 335 bits (169), Expect = 1e-88 Identities = 259/289 (89%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 661 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 720 Query: 162 aatggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgac 221 ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| Sbjct: 721 aatggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgat 780 Query: 222 tatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatct 281 || |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 781 tacactaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcg 840 Query: 282 gcctttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgt 341 || ||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 841 gcatttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgt 900 Query: 342 tccttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 ||||| |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 901 tccttagacagggatatgccggttggaacatacacccttcatctcgata 949 Score = 143 bits (72), Expect = 8e-31 Identities = 138/160 (86%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 991 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 1050 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 1051 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 1110 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttg 600 ||||||||||| | |||||| | |||||||| ||||||| Sbjct: 1111 cttcgtcctggtgtgatttatgaagggatgcgatcacttg 1150 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 39 ggttttgaagatgccaacattccatttggccctgttgaagc 79 |||||||||||||| | |||||| || |||||||||||||| Sbjct: 556 ggttttgaagatgctagcattccgttcggccctgttgaagc 596
>emb|AJ535489.3|OSA535489 Oryza sativa (indica cultivar-group) mRNA for RML1 protein Length = 1766 Score = 335 bits (169), Expect = 1e-88 Identities = 259/289 (89%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 663 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 722 Query: 162 aatggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgac 221 ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| Sbjct: 723 aatggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgat 782 Query: 222 tatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatct 281 || |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 783 tacactaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcg 842 Query: 282 gcctttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgt 341 || ||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 843 gcatttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgt 902 Query: 342 tccttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 ||||| |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 903 tccttagacagggatatgccggttggaacatacacccttcatctcgata 951 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 993 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 1052 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 1053 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 1112 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttgtcgattgat 609 ||||||||||| | |||||| | |||||||| ||||||| ||||||| Sbjct: 1113 cttcgtcctggtgtgatttatgaagggatgcgatcacttggtgattgat 1161 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 39 ggttttgaagatgccaacattccatttggccctgttgaagc 79 |||||||||||||| | |||||| || |||||||||||||| Sbjct: 558 ggttttgaagatgctagcattccgttcggccctgttgaagc 598
>emb|AJ535490.1|OSA535490 Oryza sativa (indica cultivar-group) mRNA for non-coding splice variant (rml1 gene) Length = 1886 Score = 335 bits (169), Expect = 1e-88 Identities = 259/289 (89%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 783 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 842 Query: 162 aatggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgac 221 ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| Sbjct: 843 aatggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgat 902 Query: 222 tatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatct 281 || |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 903 tacactaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcg 962 Query: 282 gcctttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgt 341 || ||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 963 gcatttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgt 1022 Query: 342 tccttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 ||||| |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 1023 tccttagacagggatatgccggttggaacatacacccttcatctcgata 1071 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 1113 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 1172 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 1173 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 1232 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttgtcgattgat 609 ||||||||||| | |||||| | |||||||| ||||||| ||||||| Sbjct: 1233 cttcgtcctggtgtgatttatgaagggatgcgatcacttggtgattgat 1281 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Plus Query: 39 ggttttgaagatgccaacattccatttggccctgttgaag 78 |||||||||||||| | |||||| || ||||||||||||| Sbjct: 102 ggttttgaagatgctagcattccgttcggccctgttgaag 141
>dbj|AK103296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125B02, full insert sequence Length = 1873 Score = 335 bits (169), Expect = 1e-88 Identities = 259/289 (89%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 757 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 816 Query: 162 aatggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgac 221 ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| Sbjct: 817 aatggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgat 876 Query: 222 tatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatct 281 || |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 877 tacactaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcg 936 Query: 282 gcctttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgt 341 || ||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 937 gcatttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgt 996 Query: 342 tccttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 ||||| |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 997 tccttagacagggatatgccggttggaacatacacccttcatctcgata 1045 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 1087 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 1146 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 1147 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 1206 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttgtcgattgat 609 ||||||||||| | |||||| | |||||||| ||||||| ||||||| Sbjct: 1207 cttcgtcctggtgtgatttatgaagggatgcgatcacttggtgattgat 1255 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 39 ggttttgaagatgccaacattccatttggccctgttgaagc 79 |||||||||||||| | |||||| || |||||||||||||| Sbjct: 652 ggttttgaagatgctagcattccgttcggccctgttgaagc 692
>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence Length = 120583 Score = 234 bits (118), Expect = 3e-58 Identities = 199/226 (88%) Strand = Plus / Plus Query: 165 ggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgactat 224 |||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| || Sbjct: 96927 ggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgattac 96986 Query: 225 actaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatctgcc 284 |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| || Sbjct: 96987 actaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcggca 97046 Query: 285 tttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgttcc 344 ||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct: 97047 tttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgttcc 97106 Query: 345 ttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 || |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 97107 ttagacagggatatgccggttggaacatacacccttcatctcgata 97152 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 98071 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 98130 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 98131 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 98190 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttgtcgattgat 609 ||||||||||| | |||||| | |||||||| ||||||| ||||||| Sbjct: 98191 cttcgtcctggtgtgatttatgaagggatgcgatcacttggtgattgat 98239 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 96407 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 96466 Query: 162 aatggt 167 |||||| Sbjct: 96467 aatggt 96472 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 38 aggttttgaagatgccaacattccatttggccctgttgaag 78 ||||||||||||||| | |||||| || ||||||||||||| Sbjct: 95725 aggttttgaagatgctagcattccgttcggccctgttgaag 95765
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 234 bits (118), Expect = 3e-58 Identities = 199/226 (88%) Strand = Plus / Plus Query: 165 ggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgactat 224 |||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| || Sbjct: 24274515 ggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgattac 24274574 Query: 225 actaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatctgcc 284 |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| || Sbjct: 24274575 actaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcggca 24274634 Query: 285 tttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgttcc 344 ||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct: 24274635 tttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgttcc 24274694 Query: 345 ttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 || |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 24274695 ttagacagggatatgccggttggaacatacacccttcatctcgata 24274740 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 24275659 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 24275718 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 24275719 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 24275778 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttgtcgattgat 609 ||||||||||| | |||||| | |||||||| ||||||| ||||||| Sbjct: 24275779 cttcgtcctggtgtgatttatgaagggatgcgatcacttggtgattgat 24275827 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 24273995 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 24274054 Query: 162 aatggt 167 |||||| Sbjct: 24274055 aatggt 24274060 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 38 aggttttgaagatgccaacattccatttggccctgttgaag 78 ||||||||||||||| | |||||| || ||||||||||||| Sbjct: 24273313 aggttttgaagatgctagcattccgttcggccctgttgaag 24273353
>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete sequence Length = 61795 Score = 234 bits (118), Expect = 3e-58 Identities = 199/226 (88%) Strand = Plus / Plus Query: 165 ggtggagataatcatggtacttatggtgggagggtcatcctagtcaagtggggtgactat 224 |||||||||||||| | ||||| ||||||||| ||||| |||||||||||||||| || Sbjct: 2953 ggtggagataatcaggttacttttggtgggagagtcattttagtcaagtggggtgattac 3012 Query: 225 actaaaagaataggtattgatggtactgctgaggcaattaaagaggccatcaaatctgcc 284 |||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| || Sbjct: 3013 actaaaagaataggcattgatggtactgcagacgcaattaaagaagccatcaaatcggca 3072 Query: 285 tttggattaagaacaagacgcgctttttggcttgaagatgaggatgaggttgttcgttcc 344 ||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct: 3073 tttggtctaagaacaagacgggccttttggcttgaagatgaggatgaggttgtccgttcc 3132 Query: 345 ttggacagggacatgccagtcggaatatacgctcttcatcttgata 390 || |||||||| ||||| || |||| |||| | |||||||| |||| Sbjct: 3133 ttagacagggatatgccggttggaacatacacccttcatctcgata 3178 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 441 gtccggacagaagataaaacattctacaccgaagacgacttcagagattttctgtcacga 500 |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||| || || Sbjct: 4050 gtccggacagaagacaagacattctacactgaagaggacttccgagactttctctcgcgg 4109 Query: 501 cgtggttggacactcctcagggagtatagtggctacagagtcgctgatactctggacgat 560 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || Sbjct: 4110 cgtggttggacactcctcagggagtattcaggctacagaatcgccgatactctggatgac 4169 Query: 561 cttcgtcctggcgcgatttaccaggggatgcgctcacttgtcgattgat 609 ||||||||||| | |||||| | |||||||| ||||||| ||||||| Sbjct: 4170 cttcgtcctggtgtgatttatgaagggatgcgatcacttggtgattgat 4218 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 102 acagctgatgcagttgcaaccaatggtgtgaatccatggaactggagagacacctcaact 161 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 2433 acagctgatgcagttgcaaccaatggtgtaaatccatggaactggagagacacctctacc 2492 Query: 162 aatggt 167 |||||| Sbjct: 2493 aatggt 2498 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 38 aggttttgaagatgccaacattccatttggccctgttgaag 78 ||||||||||||||| | |||||| || ||||||||||||| Sbjct: 1751 aggttttgaagatgctagcattccgttcggccctgttgaag 1791
>ref|NM_113503.2| Arabidopsis thaliana transcription factor AT3G25990 mRNA, complete cds Length = 1280 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 240 attgatggtactgctgaggcaattaaagaggccatcaaatctgcctttggattaagaaca 299 ||||||||||||||||| |||||||| || || |||| ||| || ||| |||| |||||| Sbjct: 763 attgatggtactgctgaagcaattaaggaagctatcagatccgcgtttagattgagaaca 822 Query: 300 agacgcgctttttggcttgaagatga 325 ||||| ||||||||||| |||||||| Sbjct: 823 agacgagctttttggctagaagatga 848
>gb|BT011951.1| Arabidopsis thaliana At3g25990 mRNA sequence Length = 1116 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 240 attgatggtactgctgaggcaattaaagaggccatcaaatctgcctttggattaagaaca 299 ||||||||||||||||| |||||||| || || |||| ||| || ||| |||| |||||| Sbjct: 760 attgatggtactgctgaagcaattaaggaagctatcagatccgcgtttagattgagaaca 819 Query: 300 agacgcgctttttggcttgaagatga 325 ||||| ||||||||||| |||||||| Sbjct: 820 agacgagctttttggctagaagatga 845
>dbj|AB023041.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11 Length = 83650 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 240 attgatggtactgctgaggcaattaaagaggccatcaaatctgcctttggattaagaaca 299 ||||||||||||||||| |||||||| || || |||| ||| || ||| |||| |||||| Sbjct: 46208 attgatggtactgctgaagcaattaaggaagctatcagatccgcgtttagattgagaaca 46149 Query: 300 agacgcgctttttggcttgaagatga 325 ||||| ||||||||||| |||||||| Sbjct: 46148 agacgagctttttggctagaagatga 46123
>dbj|AB072370.1| Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds Length = 1403 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 240 attgatggtactgctgaggcaattaaagaggccatcaaatctgcctttggattaagaaca 299 ||||||||||||||||| |||||||| || || |||| ||| || ||| |||| |||||| Sbjct: 847 attgatggtactgctgaagcaattaaggaagctatcagatccgcgtttagattgagaaca 906 Query: 300 agacgcgctttttggcttgaagatga 325 ||||| ||||||||||| |||||||| Sbjct: 907 agacgagctttttggctagaagatga 932
>ref|NM_101215.2| Arabidopsis thaliana transcription factor AT1G13450 transcript variant AT1G13450.1 mRNA, complete cds Length = 1553 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 934 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 993 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 994 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 1043
>ref|NM_001035959.1| Arabidopsis thaliana unknown protein AT1G13450 transcript variant AT1G13450.2 mRNA, complete cds Length = 1592 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 947 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 1006 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 1007 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 1056
>gb|BT011979.1| Arabidopsis thaliana At1g13450 mRNA sequence Length = 1083 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 706 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 765 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 766 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 815
>emb|BX816348.1|CNS0AD51 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZF04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1425 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 898 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 957 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 958 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 1007
>emb|BX814980.1|CNS0ACWP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1496 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 901 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 960 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 961 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 1010
>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence Length = 103157 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Minus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 91573 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 91514 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 91513 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 91464
>gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence Length = 102183 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Minus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 44266 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 44207 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 44206 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 44157
>gb|L36806.1|ATHGT Arabidopsis thaliana (clone pDGT1) GT-1 mRNA Length = 1553 Score = 67.9 bits (34), Expect = 4e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 934 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 993 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | |||||| ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 994 agatctgcttttgggttaagaactcgaagggctttttggttagaagatga 1043
>emb|BX813511.1|CNS0ADKV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZB05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1402 Score = 60.0 bits (30), Expect = 9e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 216 ggtgactatactaaaagaataggtattgatggtactgctgaggcaattaaagaggccatc 275 ||||||||||| | |||||| ||| ||||||||| ||| || ||||| ||||||| ||| Sbjct: 891 ggtgactatacaagaagaatcggtgttgatggtagtgcagaagcaatcaaagaggtaatc 950 Query: 276 aaatctgcctttggattaagaacaagacgcgctttttggcttgaagatga 325 | ||| || ||||| |||||||| || | ||||||||| | |||||||| Sbjct: 951 agatcagcttttgggttaagaactcgaagggctttttggttagaagatga 1000
>emb|CT573421.5| M.truncatula DNA sequence from clone MTH2-27B10 on chromosome 3, complete sequence Length = 123669 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 206 agtcaagtggggtgactatactaaaagaataggtattgatgg 247 |||||| |||||||||||||| | | |||||||||||||||| Sbjct: 90308 agtcaaatggggtgactatacaagacgaataggtattgatgg 90267
>gb|S46942.1| Box II Factor [tobacco, mRNA Partial, 1506 nt] Length = 1506 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 206 agtcaagtggggtgactatactaaaagaataggtattgatggtactgc 253 ||||||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct: 790 agtcaagtggggtgattacacaaaaagaattggtatcgatgggactgc 837
>gb|M93436.2|TOBGT1A Nicotiana tabacum DNA-binding protein (GT-1a) mRNA, complete cds Length = 1446 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 206 agtcaagtggggtgactatactaaaagaataggtattgatggtactgc 253 ||||||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct: 806 agtcaagtggggtgattacacaaaaagaattggtatcgatgggactgc 853
>gb|M96432.1|TOBB2F Nicotiana tabacum DNA-binding protein (B2F) gene, 3' end Length = 1493 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 206 agtcaagtggggtgactatactaaaagaataggtattgatggtactgc 253 ||||||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct: 790 agtcaagtggggtgattacacaaaaagaattggtatcgatgggactgc 837
>emb|CR693638.2|CNS0FY5U Tetraodon nigroviridis full-length cDNA Length = 1178 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gcttgaagatgaggatgaggt 334 ||||||||||||||||||||| Sbjct: 605 gcttgaagatgaggatgaggt 585
>emb|CR640068.2|CNS0ESUI Tetraodon nigroviridis full-length cDNA Length = 1134 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gcttgaagatgaggatgaggt 334 ||||||||||||||||||||| Sbjct: 572 gcttgaagatgaggatgaggt 552
>emb|CR638202.2|CNS0EREO Tetraodon nigroviridis full-length cDNA Length = 1161 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gcttgaagatgaggatgaggt 334 ||||||||||||||||||||| Sbjct: 589 gcttgaagatgaggatgaggt 569
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 acctgcaattcgcggataaag 39 ||||||||||||||||||||| Sbjct: 2719846 acctgcaattcgcggataaag 2719826
>gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 199396 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 tgaagatgaggatgaggttgt 337 ||||||||||||||||||||| Sbjct: 118650 tgaagatgaggatgaggttgt 118630
>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24 Length = 340750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 gtcgattgatcctgcatcatt 620 ||||||||||||||||||||| Sbjct: 270602 gtcgattgatcctgcatcatt 270622
>gb|AC017031.10| Homo sapiens BAC clone RP11-289K3 from 2, complete sequence Length = 151903 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 ctgctgaggcaattaaagagg 270 ||||||||||||||||||||| Sbjct: 120274 ctgctgaggcaattaaagagg 120294
>gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73 of 83 of the complete sequence Length = 323816 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 tgaagatgaggatgaggttgt 337 ||||||||||||||||||||| Sbjct: 258958 tgaagatgaggatgaggttgt 258938
>ref|XM_426639.1| PREDICTED: Gallus gallus similar to Dihydropyrimidine dehydrogenase [NADP+] precursor (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) (LOC429083), mRNA Length = 4479 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 gaagatgaggatgaggttgttcgt 341 |||||||||||| ||||||||||| Sbjct: 1174 gaagatgaggatcaggttgttcgt 1197
>gb|AC107234.8| Mus musculus chromosome 10, clone RP23-195B22, complete sequence Length = 218031 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ggttttgaagatgccaacat 58 |||||||||||||||||||| Sbjct: 150093 ggttttgaagatgccaacat 150112
>emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on chromosome 13 Contains a novel heterogeneous nuclear ribonucleoprotein family A protein and a novel gene, complete sequence Length = 168897 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aatccatggaactggagaga 151 |||||||||||||||||||| Sbjct: 68389 aatccatggaactggagaga 68408
>emb|BX511111.16| Zebrafish DNA sequence from clone RP71-62I8 in linkage group 17, complete sequence Length = 123253 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gccttaacgacagctgatgc 112 |||||||||||||||||||| Sbjct: 96914 gccttaacgacagctgatgc 96895
>emb|BX294027.1|NCB8G12 Neurospora crassa DNA linkage group V BAC contig B8G12 Length = 154038 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tcttcatcttgataatggga 396 |||||||||||||||||||| Sbjct: 70465 tcttcatcttgataatggga 70446
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tggtggagataatcatggtactta 187 ||||||||||||||| |||||||| Sbjct: 101640 tggtggagataatcaaggtactta 101617
>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170046 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gaagataaaacattctacac 469 |||||||||||||||||||| Sbjct: 87631 gaagataaaacattctacac 87612
>gb|DQ314780.1| Carassius auratus L-type calcium channel alpha 1 subunit Cav1.3b mRNA, partial cds Length = 1743 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgaagatgaggatgaggttg 336 |||||||||||||||||||| Sbjct: 1411 tgaagatgaggatgaggttg 1392
>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence Length = 176901 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acaatcaaactctgcacatt 418 |||||||||||||||||||| Sbjct: 2352 acaatcaaactctgcacatt 2371
>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence Length = 171297 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 acaatcaaactctgcacatt 418 |||||||||||||||||||| Sbjct: 76102 acaatcaaactctgcacatt 76083
>ref|XM_694130.1| PREDICTED: Danio rerio calcium channel, voltage-dependent, L type, alpha 1D subunit, b (cacna1db), partial mRNA Length = 1094 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgaagatgaggatgaggttg 336 |||||||||||||||||||| Sbjct: 1029 tgaagatgaggatgaggttg 1010
>gb|AY007704.1| Felis catus CD86 (CD86) mRNA, complete cds Length = 2830 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tcatcttgataatgggataa 399 |||||||||||||||||||| Sbjct: 2254 tcatcttgataatgggataa 2273
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 atggtggagataatcatggt 182 |||||||||||||||||||| Sbjct: 1885781 atggtggagataatcatggt 1885762
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tctggacgatcttcgtcctg 570 |||||||||||||||||||| Sbjct: 4669455 tctggacgatcttcgtcctg 4669436
>ref|NM_001009229.1| Felis catus CD86 antigen (CD86), mRNA Length = 2830 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tcatcttgataatgggataa 399 |||||||||||||||||||| Sbjct: 2254 tcatcttgataatgggataa 2273
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tggtggagataatcatggtactta 187 ||||||||||||||| |||||||| Sbjct: 82766 tggtggagataatcaaggtactta 82743
>gb|AY110843.1| Zea mays CL16364_-1 mRNA sequence Length = 616 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgaagatgaggatgaggttg 336 |||||||||||||||||||| Sbjct: 599 tgaagatgaggatgaggttg 580
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ttcatcttgataatgggata 398 |||||||||||||||||||| Sbjct: 373821 ttcatcttgataatgggata 373840 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,642,003 Number of Sequences: 3902068 Number of extensions: 4642003 Number of successful extensions: 86844 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86677 Number of HSP's gapped (non-prelim): 167 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)