>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
            factor-like domains 1)
          Length = 4351

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 379  QILSCNCNLTTHRDNRDQPKQTLNPELNDSRPPRIMPLAPLITEAAATTPSWRGAEEEFY 200
            Q+ S    + T  D  D P Q +  E    + P  MPL  ++T   A+ P    A E  Y
Sbjct: 904  QLFSVTDLIVTLEDINDNPPQCIT-EHRRLKVPEDMPLGTVLTFLDASDPDLGPAGEVKY 962

Query: 199  VITQPAHCSLQL 164
            ++ + AH + Q+
Sbjct: 963  ILVEDAHGTFQV 974

>K1C12_MOUSE (Q64291) Keratin, type I cytoskeletal 12 (Cytokeratin-12) (CK-12)|
           (Keratin-12) (K12)
          Length = 483

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 73  QGSLYPTNNCYLCQVSQALQLVSDLRDSRQRAEESNER 186
           +GSL  T   Y CQ+SQ  QL+  L +  Q+     ER
Sbjct: 363 EGSLAETEGGYCCQLSQVQQLIGSLEEQLQQVRADAER 400

>YL71_CAEEL (Q20624) Hypothetical protein F49E2.1 in chromosome X|
          Length = 600

 Score = 26.2 bits (56), Expect(2) = 1.9
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = -2

Query: 385 TTQILSCNCNLTTHRDNRDQPKQTLNPELNDSRPPRIMPLAPLITEAAATTPSWRGAEEE 206
           TT  +S   +L TH DN    KQ ++    D+     +    +I  A  +        ++
Sbjct: 431 TTYSVSSITHLLTHVDNNGNAKQ-VDVSQKDTSTRTAVARGTIILTAEISRQISENTIKK 489

Query: 205 FYVITQPAHCSLQLAAENRANLIPVVMP---D*LDTDNNCLWDTMNLGCL 65
             V+T     S+ L A+  ANLIP+  P   D +DT  N   +   L C+
Sbjct: 490 GDVLTVAKIASI-LGAKQVANLIPLCHPIRLDFVDTVFNHDIENSKLHCI 538



 Score = 24.3 bits (51), Expect(2) = 1.9
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 552 NNKQNVHAPYIGYDNQ*KDWM*HHLSNTSND-YKS-PPTYYLSQEPVHLPINSCHHHEPH 379
           NNK+  HA +       ++      + +SND Y+   P    S   VHLP +S +H   H
Sbjct: 364 NNKKARHAVF-------RNGRSEEPAKSSNDSYRGLTPVTSASSILVHLPSSSLYHSHLH 416

Query: 378 KSCH 367
            S H
Sbjct: 417 SSRH 420

>MRAY_MYCTU (P64259) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 359

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +3

Query: 447 AVIYSHYWCYLNGATSSPFIGCHNL-------YMGHAHSACCWKCIWWS 572
           A +   +W Y N   ++P +GC+N+        +  A +  C   +WW+
Sbjct: 201 AYVLITFWQYRNACVTAPGLGCYNVRDPLDLALIAAATAGACIGFLWWN 249

>MRAY_MYCPA (Q73YQ5) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 359

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +3

Query: 447 AVIYSHYWCYLNGATSSPFIGCHNL-------YMGHAHSACCWKCIWWS 572
           A +   +W Y N   ++P +GC+N+        +  A +  C   +WW+
Sbjct: 201 AYVLITFWQYRNACVTAPGLGCYNVRDPLDLAIVAAATAGACIGFLWWN 249

>MRAY_MYCBO (P64260) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 359

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +3

Query: 447 AVIYSHYWCYLNGATSSPFIGCHNL-------YMGHAHSACCWKCIWWS 572
           A +   +W Y N   ++P +GC+N+        +  A +  C   +WW+
Sbjct: 201 AYVLITFWQYRNACVTAPGLGCYNVRDPLDLALIAAATAGACIGFLWWN 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,075,700
Number of Sequences: 219361
Number of extensions: 2039968
Number of successful extensions: 4938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4931
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)