>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 649    tgataaatcagggaattgaact 670
              ||||||||||||||||||||||
Sbjct: 352194 tgataaatcagggaattgaact 352173



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 18      tcctctctccgtttcttgct 37
               ||||||||||||||||||||
Sbjct: 1799041 tcctctctccgtttcttgct 1799060

>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0009C08, complete sequence
          Length = 137033

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 649   tgataaatcagggaattgaact 670
             ||||||||||||||||||||||
Sbjct: 79722 tgataaatcagggaattgaact 79701

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 649    tgataaatcagggaattgaact 670
              ||||||||||||||||||||||
Sbjct: 352192 tgataaatcagggaattgaact 352171



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 18      tcctctctccgtttcttgct 37
               ||||||||||||||||||||
Sbjct: 1799039 tcctctctccgtttcttgct 1799058

>gb|AC102152.12| Mus musculus chromosome 7, clone RP23-314H9, complete sequence
          Length = 206923

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 589    tttacattaacttgatgattg 609
              |||||||||||||||||||||
Sbjct: 188046 tttacattaacttgatgattg 188066

>gb|AC163898.5| Mus musculus chromosome 7, clone RP24-108A5, complete sequence
          Length = 143726

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 589   tttacattaacttgatgattg 609
             |||||||||||||||||||||
Sbjct: 36754 tttacattaacttgatgattg 36774

>emb|AL606467.5| Human DNA sequence from clone RP13-172P16 on chromosome Xp21.1-21.3
             Contains a High mobility group protein 1
             (HMG-1)(LOC340573) pseudogene, a novel gene and the 5'end
             of a novel gene (LOC158730), complete sequence
          Length = 138093

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    tttcttgcttcctcattttgt 49
             |||||||||||||||||||||
Sbjct: 17721 tttcttgcttcctcattttgt 17741

>emb|AL034352.1|SPBC725 S.pombe chromosome II cosmid c725
          Length = 37949

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 543   gcttgttgttggaaatgtata 563
             |||||||||||||||||||||
Sbjct: 21396 gcttgttgttggaaatgtata 21376

>ref|NM_001021399.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC725.08),
            partial mRNA
          Length = 1830

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 543  gcttgttgttggaaatgtata 563
            |||||||||||||||||||||
Sbjct: 1677 gcttgttgttggaaatgtata 1657

>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tcctctctccgtttcttgct 37
             ||||||||||||||||||||
Sbjct: 24680 tcctctctccgtttcttgct 24699

>gb|BC085182.1| Mus musculus cDNA sequence BC029103, mRNA (cDNA clone MGC:105247
            IMAGE:30653533), complete cds
          Length = 4229

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 495  agtccttttattggttgtca 514
            ||||||||||||||||||||
Sbjct: 2238 agtccttttattggttgtca 2257

>ref|NM_001008501.1| Mus musculus cDNA sequence BC029103 (BC029103), mRNA
          Length = 4229

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 495  agtccttttattggttgtca 514
            ||||||||||||||||||||
Sbjct: 2238 agtccttttattggttgtca 2257

>gb|BC029103.1| Mus musculus cDNA sequence BC029103, mRNA (cDNA clone IMAGE:3990356),
            containing frame-shift errors
          Length = 3237

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 495  agtccttttattggttgtca 514
            ||||||||||||||||||||
Sbjct: 1249 agtccttttattggttgtca 1268

>emb|AL135842.15| Human DNA sequence from clone RP1-91G5 on chromosome 1q21.1-21.3 Contains
              the 3' end of a novel gene, a novel gene, a high mobility
              group nucleosomal binding domain 3 (HMGN3) pseudogene, the
              C1orf10 gene for chromosome 1 open reading frame 10, the
              SPRL5A for small proline rich-like (epidermal
              differentiation complex) 5A and the NICE-1 gene for NICE-1
              protein, complete sequence
          Length = 188285

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ctcttctgctcctctccacg 228
              ||||||||||||||||||||
Sbjct: 179676 ctcttctgctcctctccacg 179657

>emb|AL023800.1|HS833B2 Human DNA sequence from clone RP5-833B2 on chromosome Xq26.1-27.2
             Contains part of the FGF13 gene for fibroblast growth
             factor 13, complete sequence
          Length = 73132

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   attctgcttgttgttggaaa 557
             ||||||||||||||||||||
Sbjct: 61957 attctgcttgttgttggaaa 61938

>ref|NM_011652.3| Mus musculus titin (Ttn), transcript variant N2-A, mRNA
          Length = 101674

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   ctgcttgttgttggaaatgt 560
             ||||||||||||||||||||
Sbjct: 66095 ctgcttgttgttggaaatgt 66114

>ref|NM_028004.2| Mus musculus titin (Ttn), transcript variant N2-B, mRNA
          Length = 81931

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   ctgcttgttgttggaaatgt 560
             ||||||||||||||||||||
Sbjct: 46352 ctgcttgttgttggaaatgt 46371

>gb|AC044913.7| Homo sapiens chromosome 15, clone RP11-446P9, complete sequence
          Length = 161549

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   tggagctagaataagtcagc 586
             ||||||||||||||||||||
Sbjct: 18794 tggagctagaataagtcagc 18775

>gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, complete sequence
          Length = 149387

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 567   tggagctagaataagtcagc 586
             ||||||||||||||||||||
Sbjct: 28256 tggagctagaataagtcagc 28275

>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08,
             complete sequence
          Length = 133090

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    tcctctctccgtttcttgct 37
             ||||||||||||||||||||
Sbjct: 35321 tcctctctccgtttcttgct 35302

>gb|AC011124.9| Homo sapiens chromosome 8, clone RP11-45K10, complete sequence
          Length = 185237

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    cacgtaaaattcctcttctg 216
              ||||||||||||||||||||
Sbjct: 111805 cacgtaaaattcctcttctg 111786

>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence
          Length = 169944

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    aataagtcagctgtttacat 595
              ||||||||||||||||||||
Sbjct: 146142 aataagtcagctgtttacat 146161

>gb|AC010267.7| Homo sapiens chromosome 5 clone CTC-472C24, complete sequence
          Length = 186787

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   ttgttgttggaaatgtatat 564
             ||||||||||||||||||||
Sbjct: 94867 ttgttgttggaaatgtatat 94848

>gb|AC010886.10| Homo sapiens BAC clone RP11-370K6 from 2, complete sequence
          Length = 158787

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    cctctctccgtttcttgcttcctc 42
             ||||| ||||||||||||||||||
Sbjct: 61333 cctctatccgtttcttgcttcctc 61310

>gb|AC026431.3|AC026431 Homo sapiens chromosome 5 clone CTD-2222F6, complete sequence
          Length = 143080

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   ttgttgttggaaatgtatat 564
             ||||||||||||||||||||
Sbjct: 92070 ttgttgttggaaatgtatat 92089

>gb|AC107426.13| Homo sapiens 3 BAC RP11-573F3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114540

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aggcattacaactggtatca 141
             ||||||||||||||||||||
Sbjct: 81753 aggcattacaactggtatca 81734

>gb|AF130426.1|AF130426 Lycopersicon esculentum cryptochrome 2 gene, complete cds
          Length = 4386

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 589  tttacattaacttgatgatt 608
            ||||||||||||||||||||
Sbjct: 1630 tttacattaacttgatgatt 1649

>emb|AJ000695.1|LEAJ695 Lycopersicon esculentum CRY2 gene, partial
          Length = 676

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 589 tttacattaacttgatgatt 608
           ||||||||||||||||||||
Sbjct: 195 tttacattaacttgatgatt 214

>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4, complete
              sequence
          Length = 206525

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 526    tggggcatgcacattctgct 545
              ||||||||||||||||||||
Sbjct: 168629 tggggcatgcacattctgct 168648

>emb|CT009755.8| Mouse DNA sequence from clone RP23-50F19 on chromosome 17, complete
              sequence
          Length = 215207

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    agtccttttattggttgtca 514
              ||||||||||||||||||||
Sbjct: 204955 agtccttttattggttgtca 204936

>emb|AL928789.4| Mouse DNA sequence from clone RP23-435F21 on chromosome 2, complete
             sequence
          Length = 202887

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   ctgcttgttgttggaaatgt 560
             ||||||||||||||||||||
Sbjct: 61324 ctgcttgttgttggaaatgt 61305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,212,662
Number of Sequences: 3902068
Number of extensions: 6212662
Number of successful extensions: 117300
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117202
Number of HSP's gapped (non-prelim): 98
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)