ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal6c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 351 9e-94
2gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 ... 244 1e-61
3gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA,... 111 1e-21
4emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in ... 42 1.1
5gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete... 40 4.4
6gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, co... 40 4.4
7gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Canc... 40 4.4
8emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chr... 40 4.4
9gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, com... 40 4.4
10gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence 40 4.4
11gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complet... 40 4.4
12gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, comp... 40 4.4
13gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydroge... 40 4.4
14gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, comple... 40 4.4
15gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83... 40 4.4
16emb|AL844208.5| Mouse DNA sequence from clone RP23-354D14 on chr... 40 4.4
17gb|U00029.1|YSCH9177 Saccharomyces cerevisiae chromosome VIII co... 40 4.4
18emb|AL772173.16| Mouse DNA sequence from clone RP23-163P22 on ch... 40 4.4

>emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for putative
           nicotianamine synthase (nas gene), 3'UTR
          Length = 206

 Score =  351 bits (177), Expect = 9e-94
 Identities = 197/203 (97%), Gaps = 1/203 (0%)
 Strand = Plus / Plus

                                                                       
Query: 28  atgcatggtaataatccgcttgtnctcatgcatggatggatgtggctacttaattattta 87
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4   atgcatggtaataatccgtttgtcctcatgcatggatggatgtggctacttaattattta 63

                                                                       
Query: 88  ccataattattaatccttgtctgcatatggctggattattttctaccgtaattgtgctgc 147
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ccataattattattccttgtctgcatatggctggattattttctaccgtaattgtgctgc 123

                                                                       
Query: 148 tatg-ttttagnggtcgtctgacagctgctgcctccgggtttaacgtataggaggaggat 206
           |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 124 tatgtttttagtggtcgtctgacagctgctgcctccgggtttaacgtagaggaggaggat 183

                                  
Query: 207 gatatgtgttgtgctgagaacga 229
           |||||||||||||||||||||||
Sbjct: 184 gatatgtgttgtgctgagaacga 206



to top

>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete cds
          Length = 1346

 Score =  244 bits (123), Expect = 1e-61
 Identities = 128/130 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1    attgcccgattaatctgcgatcgatacatgcatggtaataatccgcttgtnctcatgcat 60
            ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1201 attgcccgattaatctgcgatcgatacatgcatggtaataatccgtttgtcctcatgcat 1260

                                                                        
Query: 61   ggatggatgtggctacttaattatttaccataattattaatccttgtctgcatatggctg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggatggatgtggctacttaattatttaccataattattaatccttgtctgcatatggctg 1320

                      
Query: 121  gattattttc 130
            ||||||||||
Sbjct: 1321 gattattttc 1330



to top

>gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA, partial cds
          Length = 814

 Score =  111 bits (56), Expect = 1e-21
 Identities = 191/235 (81%), Gaps = 25/235 (10%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttgcccgattaatctgcgatcgat----acatgcatggtaataatccgcttgtnctcatg 57
           ||||||||||||||  ||| ||||    |||||||||||||||||  | |||| ||||||
Sbjct: 458 ttgcccgattaatcaccgaccgatacaaacatgcatggtaataattggtttgtcctcatg 517

                                                                       
Query: 58  c----atggatggatgtggctacttaattatttaccataattattaatccttgtctgcat 113
           |    ||||||||||||||||||    |||||||||||||||||||||||||| |||| |
Sbjct: 518 catggatggatggatgtggctac----ttatttaccataattattaatccttgcctgcgt 573

                                                                       
Query: 114 atggctgg--------attattttctaccgtaattgtgctg-ctatgttttagnggtcgt 164
           ||||||||         ||||||||||||||||| |||| |  | ||||||||   ||||
Sbjct: 574 atggctggctggattatttattttctaccgtaatcgtgccgtgtttgttttagcaatcgt 633

                                                                  
Query: 165 ctgacagctgc----tgcctccgggtttaacgtataggaggaggatgatatgtgt 215
           |||||||||||    |||||||||||||||| || ||||||||||||||||||||
Sbjct: 634 ctgacagctgctgcatgcctccgggtttaacatagaggaggaggatgatatgtgt 688



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 227 cgagtcgagttgcgtactgctgtaataagtgattttgacactctatatgactgaagtg 284
           ||||||||||| | | ||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 715 cgagtcgagttacctgctgttgtaataagtgtttttgacactctatatgactcaagtg 772



to top

>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17,
             complete sequence
          Length = 155030

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    aattatttaccataattatta 99
             |||||||||||||||||||||
Sbjct: 46263 aattatttaccataattatta 46243



to top

>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence
          Length = 192819

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     ttaattatttaccataattattaa 100
              |||||||||||| |||||||||||
Sbjct: 111192 ttaattatttactataattattaa 111169



to top

>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence
          Length = 218490

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    ctggattattttctaccgta 137
              ||||||||||||||||||||
Sbjct: 151601 ctggattattttctaccgta 151620



to top

>gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    agtggcaatcactaaaaagt 300
              ||||||||||||||||||||
Sbjct: 134030 agtggcaatcactaaaaagt 134011



to top

>emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 184561

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   agtggcaatcactaaaaagt 300
             ||||||||||||||||||||
Sbjct: 55331 agtggcaatcactaaaaagt 55350



to top

>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence
          Length = 199486

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ctggattattttctaccgta 137
              ||||||||||||||||||||
Sbjct: 159283 ctggattattttctaccgta 159264



to top

>gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence
          Length = 175485

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    taattatttaccataattat 97
             ||||||||||||||||||||
Sbjct: 59173 taattatttaccataattat 59192



to top

>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence
          Length = 212207

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   agtggcaatcactaaaaagt 300
             ||||||||||||||||||||
Sbjct: 90175 agtggcaatcactaaaaagt 90194



to top

>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence
          Length = 184330

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tgtggctacttaattattta 87
             ||||||||||||||||||||
Sbjct: 56822 tgtggctacttaattattta 56803



to top

>gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydrogenase (G6PDH2) mRNA,
            complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  gctgtaataagtgattttga 264
            ||||||||||||||||||||
Sbjct: 1013 gctgtaataagtgattttga 994



to top

>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence
          Length = 182452

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    taattatttaccataattat 97
             ||||||||||||||||||||
Sbjct: 77545 taattatttaccataattat 77526



to top

>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete
              sequence
          Length = 491220

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     ttaattatttaccataattattaa 100
              |||||||||||| |||||||||||
Sbjct: 309897 ttaattatttactataattattaa 309920



to top

>emb|AL844208.5| Mouse DNA sequence from clone RP23-354D14 on chromosome 4, complete
              sequence
          Length = 206842

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 82     tatttaccataattattaatccttgtct 109
              |||||||| |||||| ||||||||||||
Sbjct: 164358 tatttaccttaattaataatccttgtct 164385



to top

>gb|U00029.1|YSCH9177 Saccharomyces cerevisiae chromosome VIII cosmid 9177
          Length = 56097

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ttaacgtataggaggaggat 206
             ||||||||||||||||||||
Sbjct: 16659 ttaacgtataggaggaggat 16640



to top

>emb|AL772173.16| Mouse DNA sequence from clone RP23-163P22 on chromosome 2, complete
             sequence
          Length = 203185

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tcatgcatggatggatgtgg 72
             ||||||||||||||||||||
Sbjct: 48806 tcatgcatggatggatgtgg 48787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,244,640
Number of Sequences: 3902068
Number of extensions: 3244640
Number of successful extensions: 60210
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60177
Number of HSP's gapped (non-prelim): 28
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top