| Clone Name | baal6c02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for putative nicotianamine synthase (nas gene), 3'UTR Length = 206 Score = 351 bits (177), Expect = 9e-94 Identities = 197/203 (97%), Gaps = 1/203 (0%) Strand = Plus / Plus Query: 28 atgcatggtaataatccgcttgtnctcatgcatggatggatgtggctacttaattattta 87 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct: 4 atgcatggtaataatccgtttgtcctcatgcatggatggatgtggctacttaattattta 63 Query: 88 ccataattattaatccttgtctgcatatggctggattattttctaccgtaattgtgctgc 147 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 ccataattattattccttgtctgcatatggctggattattttctaccgtaattgtgctgc 123 Query: 148 tatg-ttttagnggtcgtctgacagctgctgcctccgggtttaacgtataggaggaggat 206 |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 124 tatgtttttagtggtcgtctgacagctgctgcctccgggtttaacgtagaggaggaggat 183 Query: 207 gatatgtgttgtgctgagaacga 229 ||||||||||||||||||||||| Sbjct: 184 gatatgtgttgtgctgagaacga 206
>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete cds Length = 1346 Score = 244 bits (123), Expect = 1e-61 Identities = 128/130 (98%) Strand = Plus / Plus Query: 1 attgcccgattaatctgcgatcgatacatgcatggtaataatccgcttgtnctcatgcat 60 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 1201 attgcccgattaatctgcgatcgatacatgcatggtaataatccgtttgtcctcatgcat 1260 Query: 61 ggatggatgtggctacttaattatttaccataattattaatccttgtctgcatatggctg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 ggatggatgtggctacttaattatttaccataattattaatccttgtctgcatatggctg 1320 Query: 121 gattattttc 130 |||||||||| Sbjct: 1321 gattattttc 1330
>gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA, partial cds Length = 814 Score = 111 bits (56), Expect = 1e-21 Identities = 191/235 (81%), Gaps = 25/235 (10%) Strand = Plus / Plus Query: 2 ttgcccgattaatctgcgatcgat----acatgcatggtaataatccgcttgtnctcatg 57 |||||||||||||| ||| |||| ||||||||||||||||| | |||| |||||| Sbjct: 458 ttgcccgattaatcaccgaccgatacaaacatgcatggtaataattggtttgtcctcatg 517 Query: 58 c----atggatggatgtggctacttaattatttaccataattattaatccttgtctgcat 113 | |||||||||||||||||| |||||||||||||||||||||||||| |||| | Sbjct: 518 catggatggatggatgtggctac----ttatttaccataattattaatccttgcctgcgt 573 Query: 114 atggctgg--------attattttctaccgtaattgtgctg-ctatgttttagnggtcgt 164 |||||||| ||||||||||||||||| |||| | | |||||||| |||| Sbjct: 574 atggctggctggattatttattttctaccgtaatcgtgccgtgtttgttttagcaatcgt 633 Query: 165 ctgacagctgc----tgcctccgggtttaacgtataggaggaggatgatatgtgt 215 ||||||||||| |||||||||||||||| || |||||||||||||||||||| Sbjct: 634 ctgacagctgctgcatgcctccgggtttaacatagaggaggaggatgatatgtgt 688 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 227 cgagtcgagttgcgtactgctgtaataagtgattttgacactctatatgactgaagtg 284 ||||||||||| | | ||| ||||||||||| |||||||||||||||||||| ||||| Sbjct: 715 cgagtcgagttacctgctgttgtaataagtgtttttgacactctatatgactcaagtg 772
>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17, complete sequence Length = 155030 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 aattatttaccataattatta 99 ||||||||||||||||||||| Sbjct: 46263 aattatttaccataattatta 46243
>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence Length = 192819 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 ttaattatttaccataattattaa 100 |||||||||||| ||||||||||| Sbjct: 111192 ttaattatttactataattattaa 111169
>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence Length = 218490 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ctggattattttctaccgta 137 |||||||||||||||||||| Sbjct: 151601 ctggattattttctaccgta 151620
>gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156163 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 agtggcaatcactaaaaagt 300 |||||||||||||||||||| Sbjct: 134030 agtggcaatcactaaaaagt 134011
>emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chromosome 13 Contains a novel gene, complete sequence Length = 184561 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 agtggcaatcactaaaaagt 300 |||||||||||||||||||| Sbjct: 55331 agtggcaatcactaaaaagt 55350
>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence Length = 199486 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ctggattattttctaccgta 137 |||||||||||||||||||| Sbjct: 159283 ctggattattttctaccgta 159264
>gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence Length = 175485 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 taattatttaccataattat 97 |||||||||||||||||||| Sbjct: 59173 taattatttaccataattat 59192
>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence Length = 212207 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 agtggcaatcactaaaaagt 300 |||||||||||||||||||| Sbjct: 90175 agtggcaatcactaaaaagt 90194
>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence Length = 184330 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tgtggctacttaattattta 87 |||||||||||||||||||| Sbjct: 56822 tgtggctacttaattattta 56803
>gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydrogenase (G6PDH2) mRNA, complete cds Length = 1877 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gctgtaataagtgattttga 264 |||||||||||||||||||| Sbjct: 1013 gctgtaataagtgattttga 994
>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence Length = 182452 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 taattatttaccataattat 97 |||||||||||||||||||| Sbjct: 77545 taattatttaccataattat 77526
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ttaattatttaccataattattaa 100 |||||||||||| ||||||||||| Sbjct: 309897 ttaattatttactataattattaa 309920
>emb|AL844208.5| Mouse DNA sequence from clone RP23-354D14 on chromosome 4, complete sequence Length = 206842 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 tatttaccataattattaatccttgtct 109 |||||||| |||||| |||||||||||| Sbjct: 164358 tatttaccttaattaataatccttgtct 164385
>gb|U00029.1|YSCH9177 Saccharomyces cerevisiae chromosome VIII cosmid 9177 Length = 56097 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ttaacgtataggaggaggat 206 |||||||||||||||||||| Sbjct: 16659 ttaacgtataggaggaggat 16640
>emb|AL772173.16| Mouse DNA sequence from clone RP23-163P22 on chromosome 2, complete sequence Length = 203185 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tcatgcatggatggatgtgg 72 |||||||||||||||||||| Sbjct: 48806 tcatgcatggatggatgtgg 48787 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,244,640 Number of Sequences: 3902068 Number of extensions: 3244640 Number of successful extensions: 60210 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60177 Number of HSP's gapped (non-prelim): 28 length of query: 330 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 308 effective length of database: 17,147,199,772 effective search space: 5281337529776 effective search space used: 5281337529776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)