>gb|AY965347.1| Triticum monococcum quinone reductase (QR1) mRNA, complete cds
          Length = 1329

 Score =  293 bits (148), Expect = 1e-76
 Identities = 201/220 (91%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gatgcgggccgtgcagctacnacgcctgcggcagtggcnccggcngcctcaagcatgtag 61
           |||||||||||||||| ||| ||||||||||| | ||| ||| | |||||||||||||||
Sbjct: 149 gatgcgggccgtgcag-tacgacgcctgcggcggaggcgccgccggcctcaagcatgtag 207

                                                                       
Query: 62  aactccccgtnccttcancananaagaatgaggtcctgttgaaactgcaagctgcaacca 121
           || ||||||| |||||  || | ||||||||||||||| |||||||||||||||||||||
Sbjct: 208 aagtccccgtcccttctgcaaagaagaatgaggtcctgctgaaactgcaagctgcaacca 267

                                                                       
Query: 122 tcaatccagttgactggaagatacanaaaggggacttgcggactctgctgcctcgtagac 181
           |||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct: 268 tcaacccagttgactggaagatacagaaaggggacttgaggcctctgctgcctcgtagac 327

                                                   
Query: 182 tgccttttatcccagtgactgatgttgccggagtagttgt 221
           |||||||||||||||||||||||||||| |||||||||||
Sbjct: 328 tgccttttatcccagtgactgatgttgcaggagtagttgt 367

>ref|XM_472171.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  149 bits (75), Expect = 4e-33
 Identities = 182/219 (83%), Gaps = 1/219 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gatgcgggccgtgcagctacnacgcctgcggcagtggcnccggcngcctcaagcatgtag 61
           |||||| ||||||||| ||| ||||| ||||| | ||  ||| | | ||||||||||| |
Sbjct: 33  gatgcgcgccgtgcag-tacgacgccagcggcgggggagccgccgggctcaagcatgttg 91

                                                                       
Query: 62  aactccccgtnccttcancananaagaatgaggtcctgttgaaactgcaagctgcaacca 121
           || |||| || |||||  || | ||||| ||||| |||||||| ||| | || || ||||
Sbjct: 92  aagtcccggtcccttcggcaaagaagaacgaggtgctgttgaagctggaggcagcgacca 151

                                                                       
Query: 122 tcaatccagttgactggaagatacanaaaggggacttgcggactctgctgcctcgtagac 181
           |||||||||||||||||||||| || ||||||    ||||  ||||||||||||||||||
Sbjct: 152 tcaatccagttgactggaagattcagaaagggatgctgcgtcctctgctgcctcgtagac 211

                                                  
Query: 182 tgccttttatcccagtgactgatgttgccggagtagttg 220
           ||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 212 tgccttttatcccagtgaccgatgttgcaggagtggttg 250

>dbj|AK062814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E05, full
           insert sequence
          Length = 560

 Score =  149 bits (75), Expect = 4e-33
 Identities = 182/219 (83%), Gaps = 1/219 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gatgcgggccgtgcagctacnacgcctgcggcagtggcnccggcngcctcaagcatgtag 61
           |||||| ||||||||| ||| ||||| ||||| | ||  ||| | | ||||||||||| |
Sbjct: 206 gatgcgcgccgtgcag-tacgacgccagcggcgggggagccgccgggctcaagcatgttg 264

                                                                       
Query: 62  aactccccgtnccttcancananaagaatgaggtcctgttgaaactgcaagctgcaacca 121
           || |||| || |||||  || | ||||| ||||| |||||||| ||| | || || ||||
Sbjct: 265 aagtcccggtcccttcggcaaagaagaacgaggtgctgttgaagctggaggcagcgacca 324

                                                                       
Query: 122 tcaatccagttgactggaagatacanaaaggggacttgcggactctgctgcctcgtagac 181
           |||||||||||||||||||||| || ||||||    ||||  ||||||||||||||||||
Sbjct: 325 tcaatccagttgactggaagattcagaaagggatgctgcgtcctctgctgcctcgtagac 384

                                                  
Query: 182 tgccttttatcccagtgactgatgttgccggagtagttg 220
           ||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 385 tgccttttatcccagtgaccgatgttgcaggagtggttg 423

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 2e-22
 Identities = 121/144 (84%)
 Strand = Plus / Plus

                                                                            
Query: 53       agcatgtagaactccccgtnccttcancananaagaatgaggtcctgttgaaactgcaag 112
                ||||||| ||| |||| || |||||  || | ||||| ||||| |||||||| ||| | |
Sbjct: 18180144 agcatgttgaagtcccggtcccttcggcaaagaagaacgaggtgctgttgaagctggagg 18180203

                                                                            
Query: 113      ctgcaaccatcaatccagttgactggaagatacanaaaggggacttgcggactctgctgc 172
                | || |||||||||||||||||||||||||| || ||||||    ||||  |||||||||
Sbjct: 18180204 cagcgaccatcaatccagttgactggaagattcagaaagggatgctgcgtcctctgctgc 18180263

                                        
Query: 173      ctcgtagactgccttttatcccag 196
                ||||||||||||||||||||||||
Sbjct: 18180264 ctcgtagactgccttttatcccag 18180287

>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17,
             complete sequence
          Length = 147111

 Score =  113 bits (57), Expect = 2e-22
 Identities = 121/144 (84%)
 Strand = Plus / Plus

                                                                         
Query: 53    agcatgtagaactccccgtnccttcancananaagaatgaggtcctgttgaaactgcaag 112
             ||||||| ||| |||| || |||||  || | ||||| ||||| |||||||| ||| | |
Sbjct: 15818 agcatgttgaagtcccggtcccttcggcaaagaagaacgaggtgctgttgaagctggagg 15877

                                                                         
Query: 113   ctgcaaccatcaatccagttgactggaagatacanaaaggggacttgcggactctgctgc 172
             | || |||||||||||||||||||||||||| || ||||||    ||||  |||||||||
Sbjct: 15878 cagcgaccatcaatccagttgactggaagattcagaaagggatgctgcgtcctctgctgc 15937

                                     
Query: 173   ctcgtagactgccttttatcccag 196
             ||||||||||||||||||||||||
Sbjct: 15938 ctcgtagactgccttttatcccag 15961

>ref|XM_472071.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 187 tttatcccagtgactgatgttgccgg 212
           ||||| ||||||||||||||||||||
Sbjct: 211 tttattccagtgactgatgttgccgg 236

>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     aggtcctgttgaaactgcaa 111
              ||||||||||||||||||||
Sbjct: 382009 aggtcctgttgaaactgcaa 382028

>gb|AY496106.1| Capsicum annuum ripening regulated protein DDTFR6/A mRNA, partial
           sequence
          Length = 645

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 89  atgaggtcctgttgaaactgcaagctgcaaccatcaatccagttgactggaa 140
           ||||||||||| | |||||| | ||||||| ||| |||||  ||||||||||
Sbjct: 233 atgaggtcctgctaaaactggaggctgcaagcataaatcctattgactggaa 284

>ref|XM_569456.1| Cryptococcus neoformans var. neoformans JEC21 pseudouridylate
           synthase 4 (CNC01370) partial mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  aggtcctgttgaaactgcaa 111
           ||||||||||||||||||||
Sbjct: 843 aggtcctgttgaaactgcaa 862


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,026,875
Number of Sequences: 3902068
Number of extensions: 1026875
Number of successful extensions: 62393
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62342
Number of HSP's gapped (non-prelim): 46
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)