ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal5l20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel protein Length = 674 Score = 593 bits (299), Expect = e-166 Identities = 404/439 (92%) Strand = Plus / Plus Query: 64 aggatgcctcgcgcggggctggcggcggggtcgagcaaggtggacatcgccatcgacctc 123 ||||||||| ||||||||||||||| ||||||| |||||||||| | |||||||||||| Sbjct: 30 aggatgcctaccgcggggctggcggccgggtcgaacaaggtggacgtggccatcgacctc 89 Query: 124 ggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcc 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 ggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcc 149 Query: 184 tgcagggtggccgccgaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgc 243 |||||||||| ||||||||||||||||||||||||||| || ||| | ||||||||||| Sbjct: 150 tgcagggtggtcgccgaggacgccttcgactgcctccacagaggggatatctcgaagcgc 209 Query: 244 aagctcgagcagacactgaagaaaatgtgcaaggagggcgcatattggggtgctgttgct 303 |||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 210 cagcttgaagagacgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgct 269 Query: 304 ggagtgtatgtaggcatggagtatggagtggaaagggtccgcggacagtatgactggaaa 363 || |||||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct: 270 ggggtgtatgtaggcatggagtatggagtggaaagggtccgtggtgaccgtgactggaaa 329 Query: 364 aacgcgttgattggaggcatcgcaagcggcgccctgatctctgccgcgagcgacaacaaa 423 || |||||||| |||||||| |||| || |||||| ||||||| |||||| |||||||| Sbjct: 330 aatgcgttgataggaggcattgcaactggtgccctggtctctgctgcgagcaacaacaaa 389 Query: 424 gggaacaagatcgcccaggacgccatcaccggaggcgccatcgcgaccgccgtcgagttc 483 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 390 gggaacaagatcgcccaggacgccatcaccggaggtgccatcgcgaccgccgtcgagttc 449 Query: 484 atcaactacctcacctagc 502 ||||||||||||||||||| Sbjct: 450 atcaactacctcacctagc 468 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 538 tatcagacaagactgaataagaacttgttgactgaagcc 576 |||| ||||||||||||||||||||| |||||||||||| Sbjct: 497 tatcggacaagactgaataagaacttcttgactgaagcc 535
>gb|AY107980.1| Zea mays PCO142484 mRNA sequence Length = 690 Score = 230 bits (116), Expect = 4e-57 Identities = 302/364 (82%) Strand = Plus / Plus Query: 139 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggccgcc 198 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 94 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggcggcc 153 Query: 199 gaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgcaagctcgagcagaca 258 ||||| |||||||||||||||| || ||| ||| || ||||||||| | ||||| | Sbjct: 154 gaggagaccttcgactgcctccacaggggggatgtttcaaagcgcaaggttgagcatgcc 213 Query: 259 ctgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgtaggc 318 |||||||| |||||||||||||||||||||||||| |||||||||| || || || ||| Sbjct: 214 ctgaagaagatgtgcaaggagggcgcatattgggggactgttgctggcgtctacgtgggc 273 Query: 319 atggagtatggagtggaaagggtccgcggacagtatgactggaaaaacgcgttgattgga 378 ||| |||||| ||||| |||||||| || | ||||||||| |||||| || | ||| Sbjct: 274 gtggtgtatggcgtggagagggtccgtgggcgcagtgactggaagaacgcgatggtcgga 333 Query: 379 ggcatcgcaagcggcgccctgatctctgccgcgagcgacaacaaagggaacaagatcgcc 438 ||| | |||||| ||| |||| ||||| ||| |||| | || ||||||||| | Sbjct: 334 ggcgccttgtccggcgcgctggtctccgccgccagcagcaaccacggagacaagatcgtc 393 Query: 439 caggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcacc 498 ||||||||||||||| |||||| |||| || |||||||||||| ||||||||||||| Sbjct: 394 aaggacgccatcaccgccggcgccgtcgcaacggccgtcgagttcgccaactacctcacc 453 Query: 499 tagc 502 |||| Sbjct: 454 tagc 457
>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full insert sequence Length = 697 Score = 218 bits (110), Expect = 2e-53 Identities = 197/226 (87%) Strand = Plus / Plus Query: 110 tcgccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcg 169 ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 132 tcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaagatcg 191 Query: 170 gcgccgtcggcgcctgcagggtggccgccgaggacgccttcgactgcctccaaagtggga 229 |||||||||| || |||| ||| |||||||||||| | |||||||||||||| || ||| Sbjct: 192 gcgccgtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctccacagagggg 251 Query: 230 gtgtctcgaagcgcaagctcgagcagacactgaagaaaatgtgcaaggagggcgcatatt 289 ||| || |||| |||||| ||||| | ||||||||||||||||||||||| || |||| Sbjct: 252 atgtttcaaagcacaagcttgagcatatgctgaagaaaatgtgcaaggagggtgcctatt 311 Query: 290 ggggtgctgttgctggagtgtatgtaggcatggagtatggagtgga 335 ||||| |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 312 ggggtactgttgctggggtgtatgtgggcatggagtacggagtgga 357 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 440 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcac 497 |||||||||||||||||||||| | || || || ||||||||||||||||||||||| Sbjct: 462 aggacgccatcaccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 519
>gb|AY104698.1| Zea mays PCO142485 mRNA sequence Length = 678 Score = 216 bits (109), Expect = 6e-53 Identities = 184/209 (88%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggcc 195 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 208 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggct 267 Query: 196 gccgaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgcaagctcgagcag 255 |||||||| ||||||| |||||||| || ||| ||| ||||||| |||| | ||||| Sbjct: 268 gccgaggagaccttcgagtgcctccacaggggggatgtttcgaagcacaaggttgagcat 327 Query: 256 acactgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgta 315 | |||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 328 gccctgaggaagatgtgcaaggagggcgcatattggggcactgttgctggagtttatgtg 387 Query: 316 ggcatggagtatggagtggaaagggtccg 344 ||||||| ||| || |||||||||||||| Sbjct: 388 ggcatggtgtacggcgtggaaagggtccg 416 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 440 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcacct 499 ||||||||||||||| ||||| |||| || ||||||||||||||||||| | | |||| Sbjct: 512 aggacgccatcaccgccggcgcggtcgccacagccgtcgagttcatcaactgcattacct 571 Query: 500 agccg 504 ||||| Sbjct: 572 agccg 576
>dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082P21, full insert sequence Length = 784 Score = 101 bits (51), Expect = 2e-18 Identities = 159/195 (81%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggcc 195 |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| || Sbjct: 111 ctcaaccgcaccgtcgacggcttcctcaagattggcgctgttggggcttgcaaggtcgct 170 Query: 196 gccgaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgcaagctcgagcag 255 ||||| || ||||||| ||||| || || ||| ||||| |||| ||| | ||| Sbjct: 171 gccgaagagaccttcgagtgccttcacagaggggacgtctcaaagcacaaagttgagagt 230 Query: 256 acactgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgta 315 |||| |||||||| |||||||| ||||||||||||||| || |||| || || ||||| Sbjct: 231 gcactcaagaaaatttgcaaggaaggcgcatattggggtactattgcgggtgtatatgtg 290 Query: 316 ggcatggagtatgga 330 ||||||||||||||| Sbjct: 291 ggcatggagtatgga 305
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 110 tcgccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcg 169 ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 86525 tcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaagatcg 86584 Query: 170 gcgccgt 176 ||||||| Sbjct: 86585 gcgccgt 86591 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 440 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcac 497 |||||||||||||||||||||| | || || || ||||||||||||||||||||||| Sbjct: 89005 aggacgccatcaccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 89062 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 296 ctgttgctggagtgtatgtaggcatggagtatggagtgga 335 |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 88082 ctgttgctggggtgtatgtgggcatggagtacggagtgga 88121 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 259 ctgaagaaaatgtgcaaggagggcgcatattggggt 294 ||||||||||||||||||||||| || ||||||||| Sbjct: 87909 ctgaagaaaatgtgcaaggagggtgcctattggggt 87944 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 175 gtcggcgcctgcagggtggccgccgaggacgccttcgactgcctcca 221 ||||| || |||| ||| |||||||||||| | |||||||||||||| Sbjct: 86684 gtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctcca 86730
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 110 tcgccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcg 169 ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 569126 tcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaagatcg 569185 Query: 170 gcgccgt 176 ||||||| Sbjct: 569186 gcgccgt 569192 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 440 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcac 497 |||||||||||||||||||||| | || || || ||||||||||||||||||||||| Sbjct: 571606 aggacgccatcaccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 571663 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 296 ctgttgctggagtgtatgtaggcatggagtatggagtgga 335 |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 570683 ctgttgctggggtgtatgtgggcatggagtacggagtgga 570722 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 259 ctgaagaaaatgtgcaaggagggcgcatattggggt 294 ||||||||||||||||||||||| || ||||||||| Sbjct: 570510 ctgaagaaaatgtgcaaggagggtgcctattggggt 570545 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 175 gtcggcgcctgcagggtggccgccgaggacgccttcgactgcctcca 221 ||||| || |||| ||| |||||||||||| | |||||||||||||| Sbjct: 569285 gtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctcca 569331
>ref|NM_189486.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 255 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 173 |||||||||||||||||||||||||||||||| ||||| Sbjct: 76 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 113
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 173 |||||||||||||||||||||||||||||||| ||||| Sbjct: 43036666 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 43036703 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 262 aagaaaatgtgcaaggagggcgcatattggggt 294 |||||||| |||||||| ||||||||||||||| Sbjct: 43037346 aagaaaatttgcaaggaaggcgcatattggggt 43037378
>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698H10 Length = 153449 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 173 |||||||||||||||||||||||||||||||| ||||| Sbjct: 137545 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 137582 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 262 aagaaaatgtgcaaggagggcgcatattggggt 294 |||||||| |||||||| ||||||||||||||| Sbjct: 138225 aagaaaatttgcaaggaaggcgcatattggggt 138257
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 173 |||||||||||||||||||||||||||||||| ||||| Sbjct: 33695 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 33732 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 262 aagaaaatgtgcaaggagggcgcatattggggt 294 |||||||| |||||||| ||||||||||||||| Sbjct: 34375 aagaaaatttgcaaggaaggcgcatattggggt 34407
>dbj|AB041032.1| Oryza sativa gene for metallothionein-like protein, complete cds Length = 4072 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 136 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 173 |||||||||||||||||||||||||||||||| ||||| Sbjct: 102 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 139 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 262 aagaaaatgtgcaaggagggcgcatattggggt 294 |||||||| |||||||| ||||||||||||||| Sbjct: 783 aagaaaatttgcaaggaaggcgcatattggggt 815
>gb|BT019074.1| Zea mays clone Contig647.F mRNA sequence Length = 774 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 268 atgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgtaggcatggagtat 327 |||||||||| ||| ||||||||||| |||||||||| || ||||| ||||||| ||| Sbjct: 432 atgtgcaaggggggggcatattggggccctgttgctggggtttatgtgggcatggtgtag 373 Query: 328 ggagtggaaagggtccg 344 || | |||||||||||| Sbjct: 372 gggggggaaagggtccg 356
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds Length = 777 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 116 tcgacctcggcaacccgctgctcaaccgc 144 ||||||||||| ||||||||||||||||| Sbjct: 654 tcgacctcggccacccgctgctcaaccgc 626
>emb|X94304.1|STPOM14 S.tuberosum mRNA for POM14 protein Length = 537 Score = 48.1 bits (24), Expect = 0.032 Identities = 60/72 (83%) Strand = Plus / Plus Query: 260 tgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgtaggca 319 ||||||||||||| || || || || |||||||| |||||||||| || |||| || | Sbjct: 206 tgaagaaaatgtgtaaagaaggtgcttattgggggactgttgctggggtatatgctggaa 265 Query: 320 tggagtatggag 331 |||||||||||| Sbjct: 266 tggagtatggag 277
>ref|NM_146102.1| Mus musculus expressed sequence AU041783 (AU041783), mRNA Length = 3581 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 2210 caagctggagcagacactgaagaaaat 2236
>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence Length = 868 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 118 gacctcggcaacccgctgctcaaccgc 144 ||||||||| ||||||||||||||||| Sbjct: 170 gacctcggccacccgctgctcaaccgc 196
>gb|BC031515.1| Mus musculus expressed sequence AU041783, mRNA (cDNA clone MGC:28084 IMAGE:3711746), complete cds Length = 3581 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 2210 caagctggagcagacactgaagaaaat 2236
>gb|AC125150.3| Mus musculus BAC clone RP24-354K9 from chromosome 19, complete sequence Length = 154390 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 66171 caagctggagcagacactgaagaaaat 66145
>gb|AC161518.3| Mus musculus chromosome 19, clone RP24-232M2, complete sequence Length = 176356 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 146409 caagctggagcagacactgaagaaaat 146435
>dbj|AK220430.1| Mus musculus mRNA for mKIAA1914 protein Length = 3532 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 2177 caagctggagcagacactgaagaaaat 2203
>dbj|AK087449.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130120P06 product:similar to CDNA FLJ14564 FIS, CLONE NT2RM4000229, WEAKLY SIMILAR TO GALLUS GALLUS ACTIN FILAMENT-ASSOCIATED PROTEIN (AFAP-110) MRNA (FRAGMENT) [Homo sapiens], full insert sequence Length = 3600 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 2245 caagctggagcagacactgaagaaaat 2271
>dbj|AK048649.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130093H02 product:similar to CDNA FLJ14564 FIS, CLONE NT2RM4000229, WEAKLY SIMILAR TO GALLUS GALLUS ACTIN FILAMENT-ASSOCIATED PROTEIN (AFAP-110) MRNA (FRAGMENT) [Homo sapiens], full insert sequence Length = 3669 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaat 269 |||||| |||||||||||||||||||| Sbjct: 2314 caagctggagcagacactgaagaaaat 2340
>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence Length = 802 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 118 gacctcggcaacccgctgctcaaccgc 144 ||||||||| ||||||||||||||||| Sbjct: 648 gacctcggccacccgctgctcaaccgc 622
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 117 cgacctcggcaacccgctgctcaacc 142 ||||| |||||||||||||||||||| Sbjct: 48097 cgaccccggcaacccgctgctcaacc 48072
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 cgccatcgcgaccgccgtcgag 480 |||||||||||||||||||||| Sbjct: 232790 cgccatcgcgaccgccgtcgag 232769
>ref|XM_468423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ctcaagatcggcgccgtcggc 180 ||||||||||||||||||||| Sbjct: 664 ctcaagatcggcgccgtcggc 684
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 tcgacctcggcaacccgctgctcaaccgc 144 ||||||||||| ||||||| ||||||||| Sbjct: 10820522 tcgacctcggccacccgctcctcaaccgc 10820550
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 116 tcgacctcggcaacccgctgctcaaccgc 144 ||||||||||| ||||||| ||||||||| Sbjct: 34365 tcgacctcggccacccgctcctcaaccgc 34337
>gb|AY232032.1| Drosophila yakuba clone yak-ad_CG5885 mRNA sequence Length = 540 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 ggcatcgcaagcggcgccctg 399 ||||||||||||||||||||| Sbjct: 520 ggcatcgcaagcggcgccctg 540
>gb|AY950802.1| Bacteriophage SH1, complete genome Length = 30889 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ccgccgaggacgccttcgact 214 ||||||||||||||||||||| Sbjct: 13869 ccgccgaggacgccttcgact 13889
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 tcgacctcggcaacccgctgctcaaccgc 144 ||||||||||| ||||||| ||||||||| Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgc 10818651
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ctcaagatcggcgccgtcggc 180 ||||||||||||||||||||| Sbjct: 35153080 ctcaagatcggcgccgtcggc 35153100
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ctcaagatcggcgccgtcggc 180 ||||||||||||||||||||| Sbjct: 48436 ctcaagatcggcgccgtcggc 48456
>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence Length = 839 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 tcgacctcggcaacccgctgctcaaccgc 144 ||||||||||| ||||||| ||||||||| Sbjct: 178 tcgacctcggccacccgctcctcaaccgc 206
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 tcgacctcggcaacccgctgctcaaccgc 144 ||||||||||| ||||||| ||||||||| Sbjct: 141 tcgacctcggccacccgctcctcaaccgc 169
>gb|AC121542.8| Mus musculus chromosome 15, clone RP24-137J5, complete sequence Length = 164489 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gacagtatgactggaaaaac 366 |||||||||||||||||||| Sbjct: 106646 gacagtatgactggaaaaac 106665
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 cgccatcaccggaggcgcca 463 |||||||||||||||||||| Sbjct: 5132899 cgccatcaccggaggcgcca 5132880
>gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, complete sequence Length = 214392 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gacagtatgactggaaaaac 366 |||||||||||||||||||| Sbjct: 187697 gacagtatgactggaaaaac 187678
>emb|AL034407.1|HS657J8 Human DNA sequence from clone RP4-657J8 on chromosome Xq26.1-26.3, complete sequence Length = 98954 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gtatggagtggaaagggtcc 343 |||||||||||||||||||| Sbjct: 2171 gtatggagtggaaagggtcc 2190
>emb|AJ719930.1| Gallus gallus mRNA for hypothetical protein, clone 8g15 Length = 2474 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcgcggggctggcggcgggg 93 |||||||||||||||||||| Sbjct: 81 gcgcggggctggcggcgggg 62
>ref|NM_001008467.1| Gallus gallus anaphase promoting complex subunit 10 (ANAPC10), mRNA Length = 2474 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcgcggggctggcggcgggg 93 |||||||||||||||||||| Sbjct: 81 gcgcggggctggcggcgggg 62
>gb|AE005829.1| Caulobacter crescentus CB15 section 155 of 359 of the complete genome Length = 11420 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gacatcgccatcgacctcgg 125 |||||||||||||||||||| Sbjct: 3118 gacatcgccatcgacctcgg 3137
>gb|AY249529.1| Rhodococcus ruber aldh6-adh6 operon, complete sequence Length = 2791 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 gccatcgcgaccgccgtcga 479 |||||||||||||||||||| Sbjct: 373 gccatcgcgaccgccgtcga 392
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 ggtggccgccgaggacgccttcga 212 |||||||||||||| ||||||||| Sbjct: 861806 ggtggccgccgaggtcgccttcga 861783
>gb|AC093511.4| Homo sapiens chromosome 16 clone CTD-2507C6, complete sequence Length = 189250 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 caagctcgagcagacactgaagaaaatg 270 |||||| ||| ||||||||||||||||| Sbjct: 111159 caagctagagtagacactgaagaaaatg 111186
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcggggctggcggcggggtc 95 |||||||||||||||||||| Sbjct: 2174295 gcggggctggcggcggggtc 2174314
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cggcgccgtcggcgcctgca 187 |||||||||||||||||||| Sbjct: 1296821 cggcgccgtcggcgcctgca 1296840
>ref|XM_316558.2| Anopheles gambiae str. PEST ENSANGP00000010090 (ENSANGG00000007601), partial mRNA Length = 639 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cggggctggcggcggggtcg 96 |||||||||||||||||||| Sbjct: 588 cggggctggcggcggggtcg 569 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,004,920 Number of Sequences: 3902068 Number of extensions: 4004920 Number of successful extensions: 86125 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85267 Number of HSP's gapped (non-prelim): 857 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
