ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal5l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 ... 218 2e-54
2gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA,... 62 3e-07
3emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 52 3e-04
4ref|XM_754005.1| Ustilago maydis 521 hypothetical protein (UM029... 40 1.3
5ref|XM_479612.1| Oryza sativa (japonica cultivar-group), mRNA 38 5.0
6gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 38 5.0
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
9gb|AE009634.1| Brucella melitensis 16M chromosome I, section 191... 38 5.0
10dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
11dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
12gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 38 5.0
13dbj|AK101012.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
14dbj|AK072158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
15dbj|AK063053.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
16dbj|AK060763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
17dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
18gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 38 5.0
19emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 38 5.0

>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete cds
          Length = 1346

 Score =  218 bits (110), Expect = 2e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    gcgccagcacatcgtcatcgacccatggcacggtgatgaattcacccaccgattaatatt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gcgccagcacatcgtcatcgacccatggcacggtgatgaattcacccaccgattaatatt 1203

                                                              
Query: 61   gcccgattaatctgcgatcgatacatgcatggtaataatccgtttgtcct 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 gcccgattaatctgcgatcgatacatgcatggtaataatccgtttgtcct 1253



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>gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA, partial cds
          Length = 814

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 69/80 (86%), Gaps = 5/80 (6%)
 Strand = Plus / Plus

                                                                       
Query: 36  atgaattcacccaccgattaata-ttgcccgattaatctgcgatcgat----acatgcat 90
           ||||| ||||||||||||||||| ||||||||||||||  ||| ||||    ||||||||
Sbjct: 434 atgaactcacccaccgattaatatttgcccgattaatcaccgaccgatacaaacatgcat 493

                               
Query: 91  ggtaataatccgtttgtcct 110
           |||||||||  |||||||||
Sbjct: 494 ggtaataattggtttgtcct 513



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>emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for putative
           nicotianamine synthase (nas gene), 3'UTR
          Length = 206

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 85  atgcatggtaataatccgtttgtcct 110
           ||||||||||||||||||||||||||
Sbjct: 4   atgcatggtaataatccgtttgtcct 29



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>ref|XM_754005.1| Ustilago maydis 521 hypothetical protein (UM02951.1) partial mRNA
          Length = 3756

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gcgccagcacatcgtcatcg 20
            ||||||||||||||||||||
Sbjct: 3631 gcgccagcacatcgtcatcg 3612



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>ref|XM_479612.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3252

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   gatcgatacatgcatggta 94
            |||||||||||||||||||
Sbjct: 3185 gatcgatacatgcatggta 3167



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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 1       gcgccagcacatcgtcatc 19
               |||||||||||||||||||
Sbjct: 2032618 gcgccagcacatcgtcatc 2032636



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 76       gatcgatacatgcatggta 94
                |||||||||||||||||||
Sbjct: 29348166 gatcgatacatgcatggta 29348148



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 82       tacatgcatggtaataatc 100
                |||||||||||||||||||
Sbjct: 42273729 tacatgcatggtaataatc 42273747



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>gb|AE009634.1| Brucella melitensis 16M chromosome I, section 191 of 195 of the
            complete sequence
          Length = 10029

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    gcgccagcacatcgtcatc 19
            |||||||||||||||||||
Sbjct: 8865 gcgccagcacatcgtcatc 8847



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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0401G10
          Length = 160704

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    tacatgcatggtaataatc 100
             |||||||||||||||||||
Sbjct: 45686 tacatgcatggtaataatc 45704



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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0597G07
          Length = 152928

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     gatcgatacatgcatggta 94
              |||||||||||||||||||
Sbjct: 136855 gatcgatacatgcatggta 136837



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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 1       gcgccagcacatcgtcatc 19
               |||||||||||||||||||
Sbjct: 2049046 gcgccagcacatcgtcatc 2049064



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>dbj|AK101012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148P17, full
            insert sequence
          Length = 3252

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   gatcgatacatgcatggta 94
            |||||||||||||||||||
Sbjct: 3185 gatcgatacatgcatggta 3167



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>dbj|AK072158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131J23, full
            insert sequence
          Length = 3051

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   gatcgatacatgcatggta 94
            |||||||||||||||||||
Sbjct: 2907 gatcgatacatgcatggta 2889



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>dbj|AK063053.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F01, full
           insert sequence
          Length = 569

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  tacatgcatggtaataatc 100
           |||||||||||||||||||
Sbjct: 472 tacatgcatggtaataatc 454



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>dbj|AK060763.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A05, full
            insert sequence
          Length = 1720

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   gatcgatacatgcatggta 94
            |||||||||||||||||||
Sbjct: 1576 gatcgatacatgcatggta 1558



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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    gatcgatacatgcatggta 94
             |||||||||||||||||||
Sbjct: 11088 gatcgatacatgcatggta 11070



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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 47      caccgattaatattgcccg 65
               |||||||||||||||||||
Sbjct: 2177476 caccgattaatattgcccg 2177494



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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 1       gcgccagcacatcgtcatc 19
               |||||||||||||||||||
Sbjct: 2046165 gcgccagcacatcgtcatc 2046183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 502,165
Number of Sequences: 3902068
Number of extensions: 502165
Number of successful extensions: 26049
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25958
Number of HSP's gapped (non-prelim): 89
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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