Clone Information

BLAST Search Result

Clone Name	baal5j14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_463239.1\| Oryza sativa (japonica cultivar-group), mRNA	192	7e-46
2	gb\|AC091246.8\| Oryza sativa (japonica cultivar-group) chromosome...	111	2e-21
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	111	2e-21
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
5	ref\|NM_103648.2\| Arabidopsis thaliana unknown protein AT1G47550 ...	72	2e-09
6	ref\|NM_103649.2\| Arabidopsis thaliana unknown protein AT1G47560 ...	72	2e-09
7	gb\|AY265854.1\| Zea mays roothairless 1 (rth1) gene, complete cds	54	4e-04
8	dbj\|AK072319.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.10
9	gb\|AC007519.2\|F16N3 Sequence of BAC F16N3 from Arabidopsis thali...	46	0.10
10	gb\|AC012376.12\| Drosophila melanogaster clone BACR48C12, complet...	42	1.6
11	gb\|AC104873.7\| Mus musculus chromosome 1, clone RP23-434G18, com...	42	1.6
12	gb\|AC110731.10\| Mus musculus chromosome 6, clone RP23-433J5, com...	42	1.6
13	gb\|AC139512.20\| Mus musculus chromosome 6, clone RP24-540G13, co...	42	1.6
14	gb\|AC127554.4\| Mus musculus BAC clone RP24-323K23 from chromosom...	42	1.6
15	gb\|AF284554.1\| Leishmania tarentolae folylpolyglutamate syntheta...	42	1.6
16	emb\|AL109965.34\|HS1121G12 Human DNA sequence from clone RP5-1121...	42	1.6
17	dbj\|AK031115.1\| Mus musculus 13 days embryo forelimb cDNA, RIKEN...	42	1.6
18	gb\|AC154119.8\| Mus musculus chromosome 1, clone RP24-103A6, comp...	42	1.6
19	dbj\|AB008266.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	1.6
20	gb\|AE003512.3\| Drosophila melanogaster chromosome X, section 64 ...	42	1.6
21	gb\|AY653733.1\| Acanthamoeba polyphaga mimivirus, complete genome	42	1.6
22	gb\|AC168852.2\| Mus musculus BAC clone RP24-191L21 from chromosom...	40	6.4
23	gb\|AC122766.25\| Mus musculus chromosome 3, clone RP24-111F24, co...	40	6.4
24	gb\|AF288738.1\| Homo sapiens epidermal growth factor receptor (EG...	40	6.4
25	gb\|AC104917.9\| Mus musculus chromosome 1, clone RP23-329F7, comp...	40	6.4
26	ref\|NM_005228.3\| Homo sapiens epidermal growth factor receptor (...	40	6.4
27	gb\|AC134565.5\| Mus musculus BAC clone RP24-185F21 from chromosom...	40	6.4
28	gb\|AC131783.4\| Mus musculus BAC clone RP24-377P12 from chromosom...	40	6.4
29	gb\|AC129209.4\| Mus musculus BAC clone RP24-318B5 from chromosome...	40	6.4
30	gb\|AC127572.3\| Mus musculus BAC clone RP24-231A11 from chromosom...	40	6.4
31	gb\|AC147265.2\| Mus musculus BAC clone RP24-233K2 from chromosome...	40	6.4
32	gb\|AC147155.2\| Mus musculus BAC clone RP24-341L19 from chromosom...	40	6.4
33	gb\|AC124081.7\| Mus musculus chromosome 3, clone RP24-384A12, com...	40	6.4
34	gb\|AY588246.1\| Homo sapiens epidermal growth factor receptor (er...	40	6.4
35	gb\|AC132284.5\| Mus musculus BAC clone RP24-351O18 from chromosom...	40	6.4
36	gb\|AC175390.2\| Mus musculus BAC clone RP24-108F5 from chromosome...	40	6.4
37	gb\|AC140335.3\| Mus musculus BAC clone RP24-64C18 from chromosome...	40	6.4
38	gb\|AC073324.6\| Homo sapiens BAC clone RP11-339F13 from 7, comple...	40	6.4
39	gb\|AC142253.3\| Mus musculus BAC clone RP24-555O3 from chromosome...	40	6.4
40	emb\|Z81470.1\|CEC14A6 Caenorhabditis elegans Cosmid C14A6, comple...	40	6.4
41	gb\|AC123853.2\| Mus musculus BAC clone RP23-326J1 from chromosome...	40	6.4
42	gb\|AC099578.8\| Mus musculus chromosome 10, clone RP23-182D17, co...	40	6.4
43	gb\|AC115885.29\| Mus musculus chromosome 3, clone RP24-396D16, co...	40	6.4
44	gb\|AC126071.5\| Rattus norvegicus 10 BAC CH230-209B21 (Children's...	40	6.4
45	emb\|AL137839.6\| Human DNA sequence from clone RP3-471C18 on chro...	40	6.4
46	emb\|BX571701.10\| Zebrafish DNA sequence from clone CH211-233M11 ...	40	6.4
47	emb\|CR385090.8\| Zebrafish DNA sequence from clone CH211-245M19 i...	40	6.4
48	gb\|AC151829.4\| Mus musculus BAC clone RP24-151C24 from chromosom...	40	6.4
49	gb\|AC182040.3\| Mus musculus BAC clone RP24-26M10 from chromosome...	40	6.4
50	emb\|BX897670.7\| Zebrafish DNA sequence from clone DKEY-117L15 in...	40	6.4
51	gb\|AC104457.2\| Homo sapiens chromosome 1 clone RP5-837M10, compl...	40	6.4
52	emb\|CR603510.1\| full-length cDNA clone CS0DI022YJ24 of Placenta ...	40	6.4
53	gb\|AC091531.9\| Mus musculus Strain C57BL6/J Chromosome 9 RP23-28...	40	6.4
54	dbj\|AB105857.1\| Oncorhynchus masou ishikawai DNA, microsatellite...	40	6.4
55	gb\|AC182761.2\| Mus musculus BAC clone RP24-91P5 from chromosome ...	40	6.4
56	gb\|AC182036.2\| Mus musculus BAC clone RP24-120L13 from chromosom...	40	6.4
57	ref\|NM_075426.2\| Caenorhabditis elegans W04E12.4 (W04E12.4) mRNA...	40	6.4
58	ref\|NM_075147.1\| Caenorhabditis elegans C14A6.5 (C14A6.5) mRNA, ...	40	6.4
59	gb\|AC127185.3\| Rattus norvegicus BAC CH230-28E5 (Children's Hos...	40	6.4
60	gb\|AC096718.3\| Homo sapiens BAC clone RP11-10P19 from 4, complet...	40	6.4
61	gb\|AC157947.2\| Mus musculus BAC clone RP23-238L21 from chromosom...	40	6.4
62	gb\|AC025781.8\|AC025781 Arabidopsis thaliana chromosome 1 BAC F15...	40	6.4
63	gb\|AF062308.1\|AF062308 Arabidopsis thaliana acetyl-CoA carboxyla...	40	6.4
64	gb\|AC130310.17\| Homo sapiens chromosome 11, clone RP11-269A12, c...	40	6.4
65	gb\|AC148320.3\| Mus musculus BAC clone RP24-555B2 from chromosome...	40	6.4
66	emb\|AL731775.14\| Mouse DNA sequence from clone RP23-151F3 on chr...	40	6.4
67	dbj\|AP006285.2\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	6.4
68	gb\|AC101658.8\| Mus musculus chromosome 7, clone RP23-470G18, com...	40	6.4
69	dbj\|AP005208.3\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	6.4
70	emb\|Z82070.2\|CEW04E12 Caenorhabditis elegans Cosmid W04E12, comp...	40	6.4
71	gb\|AF064763.1\|AF064763 Lactococcus lactis subsp. cremoris putati...	40	6.4
72	gb\|AC148984.3\| Mus musculus BAC clone RP24-550J1 from Y, complet...	40	6.4
73	emb\|X00588.1\|HSEGFPRE Human mRNA for precursor of epidermal grow...	40	6.4

>ref|XM_463239.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3051

 Score =  192 bits (97), Expect = 7e-46
 Identities = 240/285 (84%), Gaps = 7/285 (2%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgggattgacaagtcgattggcgccatgtacagaagattacagaagacattgacttctg 61
            |||||||||||||||| || || |||||||| || || |||||||||||| |||||||||
Sbjct: 2548 ctgggattgacaagtcaatcggtgccatgtataggaggttacagaagacactgacttctg 2607

                                                                        
Query: 62   atgaattgttcccctcactatgggataaatgcaagaaagagttcctggacaagtacgaga 121
            |||| ||||| || ||||| ||||| || ||||||||||||||  |||||||||||||||
Sbjct: 2608 atgagttgtttccttcactgtgggacaagtgcaagaaagagtttttggacaagtacgaga 2667

                                                                        
Query: 122  gctttgtccagatggtgacgcggatctacgggaacgagcctataatgccggttgccgaga 181
            |||| || |||||||||||||||||||| || || ||||| || ||| ||||||| || |
Sbjct: 2668 gcttcgttcagatggtgacgcggatctatggaaatgagcccatcatgtcggttgctgata 2727

                                                                        
Query: 182  tgagggacaccctcgctagcttctagatacaattgagtacagcgcaatgtatcattttca 241
            |||  ||   ||| |||| ||||||||||    | |||||||||| |||||||| |||||
Sbjct: 2728 tgaaagatgtccttgctaacttctagata----taagtacagcgccatgtatca-tttca 2782

                                                         
Query: 242  cagtgccgtggccctatctatattcaattcattctattgaatttt 286
            |||||| || |  ||||||||||||||||||||  ||||||||||
Sbjct: 2783 cagtgcagtag--ctatctatattcaattcatttgattgaatttt 2825

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>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03
             map E1419S, complete sequence
          Length = 150945

 Score =  111 bits (56), Expect = 2e-21
 Identities = 160/192 (83%), Gaps = 7/192 (3%)
 Strand = Plus / Minus

                                                                         
Query: 95    agaaagagttcctggacaagtacgagagctttgtccagatggtgacgcggatctacggga 154
             ||||||||||  ||||||||||||||||||| || |||||||||||||||||||| || |
Sbjct: 53193 agaaagagtttttggacaagtacgagagcttcgttcagatggtgacgcggatctatggaa 53134

                                                                         
Query: 155   acgagcctataatgccggttgccgagatgagggacaccctcgctagcttctagatacaat 214
             | ||||| || ||| ||||||| || ||||  ||   ||| |||| ||||||||||    
Sbjct: 53133 atgagcccatcatgtcggttgctgatatgaaagatgtccttgctaacttctagata---- 53078

                                                                         
Query: 215   tgagtacagcgcaatgtatcattttcacagtgccgtggccctatctatattcaattcatt 274
             | |||||||||| |||||||| ||||||||||| || |  ||||||||||||||||||||
Sbjct: 53077 taagtacagcgccatgtatca-tttcacagtgcagtag--ctatctatattcaattcatt 53021

                         
Query: 275   ctattgaatttt 286
               ||||||||||
Sbjct: 53020 tgattgaatttt 53009



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                         
Query: 6     gattgacaagtcgattggcgccatgtacagaagattacagaagacattgacttctgatga 65
             |||||||||||| || || |||||||| || || |||||||||||| |||||||||||||
Sbjct: 53540 gattgacaagtcaatcggtgccatgtataggaggttacagaagacactgacttctgatga 53481

                                            
Query: 66    attgttcccctcactatgggataaatgcaag 96
              ||||| || ||||| ||||| || ||||||
Sbjct: 53480 gttgtttccttcactgtgggacaagtgcaag 53450

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  111 bits (56), Expect = 2e-21
 Identities = 160/192 (83%), Gaps = 7/192 (3%)
 Strand = Plus / Minus

                                                                            
Query: 95       agaaagagttcctggacaagtacgagagctttgtccagatggtgacgcggatctacggga 154
                ||||||||||  ||||||||||||||||||| || |||||||||||||||||||| || |
Sbjct: 23605110 agaaagagtttttggacaagtacgagagcttcgttcagatggtgacgcggatctatggaa 23605051

                                                                            
Query: 155      acgagcctataatgccggttgccgagatgagggacaccctcgctagcttctagatacaat 214
                | ||||| || ||| ||||||| || ||||  ||   ||| |||| ||||||||||    
Sbjct: 23605050 atgagcccatcatgtcggttgctgatatgaaagatgtccttgctaacttctagata---- 23604995

                                                                            
Query: 215      tgagtacagcgcaatgtatcattttcacagtgccgtggccctatctatattcaattcatt 274
                | |||||||||| |||||||| ||||||||||| || |  ||||||||||||||||||||
Sbjct: 23604994 taagtacagcgccatgtatca-tttcacagtgcagtag--ctatctatattcaattcatt 23604938

                            
Query: 275      ctattgaatttt 286
                  ||||||||||
Sbjct: 23604937 tgattgaatttt 23604926



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 6        gattgacaagtcgattggcgccatgtacagaagattacagaagacattgacttctgatga 65
                |||||||||||| || || |||||||| || || |||||||||||| |||||||||||||
Sbjct: 23605457 gattgacaagtcaatcggtgccatgtataggaggttacagaagacactgacttctgatga 23605398

                                               
Query: 66       attgttcccctcactatgggataaatgcaag 96
                 ||||| || ||||| ||||| || ||||||
Sbjct: 23605397 gttgtttccttcactgtgggacaagtgcaag 23605367

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  111 bits (56), Expect = 2e-21
 Identities = 160/192 (83%), Gaps = 7/192 (3%)
 Strand = Plus / Minus

                                                                            
Query: 95       agaaagagttcctggacaagtacgagagctttgtccagatggtgacgcggatctacggga 154
                ||||||||||  ||||||||||||||||||| || |||||||||||||||||||| || |
Sbjct: 23598138 agaaagagtttttggacaagtacgagagcttcgttcagatggtgacgcggatctatggaa 23598079

                                                                            
Query: 155      acgagcctataatgccggttgccgagatgagggacaccctcgctagcttctagatacaat 214
                | ||||| || ||| ||||||| || ||||  ||   ||| |||| ||||||||||    
Sbjct: 23598078 atgagcccatcatgtcggttgctgatatgaaagatgtccttgctaacttctagata---- 23598023

                                                                            
Query: 215      tgagtacagcgcaatgtatcattttcacagtgccgtggccctatctatattcaattcatt 274
                | |||||||||| |||||||| ||||||||||| || |  ||||||||||||||||||||
Sbjct: 23598022 taagtacagcgccatgtatca-tttcacagtgcagtag--ctatctatattcaattcatt 23597966

                            
Query: 275      ctattgaatttt 286
                  ||||||||||
Sbjct: 23597965 tgattgaatttt 23597954



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 6        gattgacaagtcgattggcgccatgtacagaagattacagaagacattgacttctgatga 65
                |||||||||||| || || |||||||| || || |||||||||||| |||||||||||||
Sbjct: 23598485 gattgacaagtcaatcggtgccatgtataggaggttacagaagacactgacttctgatga 23598426

                                               
Query: 66       attgttcccctcactatgggataaatgcaag 96
                 ||||| || ||||| ||||| || ||||||
Sbjct: 23598425 gttgtttccttcactgtgggacaagtgcaag 23598395

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>ref|NM_103648.2| Arabidopsis thaliana unknown protein AT1G47550 mRNA, complete cds
          Length = 2664

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                        
Query: 82   tgggataaatgcaagaaagagttcctggacaagtacgagagctt 125
            ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2539 tgggataaatgcaagaaggagtttctggacaagtacgagagctt 2582

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>ref|NM_103649.2| Arabidopsis thaliana unknown protein AT1G47560 mRNA, complete cds
          Length = 2664

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                        
Query: 82   tgggataaatgcaagaaagagttcctggacaagtacgagagctt 125
            ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2530 tgggataaatgcaagaaggagtttctggacaagtacgagagctt 2573

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>gb|AY265854.1| Zea mays roothairless 1 (rth1) gene, complete cds
          Length = 14337

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 107   tggacaagtacgagagctttgtccagatggtgacgcggatctacgggaacgagcc 161
             ||||||| |||||||||||||| |||||||| || ||||| || ||||| |||||
Sbjct: 13474 tggacaaatacgagagctttgttcagatggtaacacggatatatgggaatgagcc 13528

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>dbj|AK072319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029D06, full
            insert sequence
          Length = 3196

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 79   ctatgggataaatgcaagaaagagttcctggacaa 113
            |||||||||||||||||||| ||||| || |||||
Sbjct: 2711 ctatgggataaatgcaagaaggagtttcttgacaa 2745

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>gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1, complete
              sequence
          Length = 171769

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 95     agaaagagttcctggacaagtacgagagctt 125
              |||| ||||| ||||||||||||||||||||
Sbjct: 102466 agaaggagtttctggacaagtacgagagctt 102436



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 95    agaaagagttcctggacaagtacgagagctt 125
             |||| ||||| ||||||||||||||||||||
Sbjct: 93172 agaaggagtttctggacaagtacgagagctt 93142

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>gb|AC012376.12| Drosophila melanogaster clone BACR48C12, complete sequence
          Length = 183048

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    tgtatgtgtgtgtgactgact 373
              |||||||||||||||||||||
Sbjct: 137285 tgtatgtgtgtgtgactgact 137265

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>gb|AC104873.7| Mus musculus chromosome 1, clone RP23-434G18, complete sequence
          Length = 205266

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 345    tgtcaaattgtatgtgtgtgt 365
              |||||||||||||||||||||
Sbjct: 194834 tgtcaaattgtatgtgtgtgt 194854

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>gb|AC110731.10| Mus musculus chromosome 6, clone RP23-433J5, complete sequence
          Length = 206482

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   gtcaaattgtatgtgtgtgtg 366
             |||||||||||||||||||||
Sbjct: 33193 gtcaaattgtatgtgtgtgtg 33173

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>gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, complete sequence
          Length = 179236

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   gtcaaattgtatgtgtgtgtg 366
             |||||||||||||||||||||
Sbjct: 30481 gtcaaattgtatgtgtgtgtg 30501

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>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence
          Length = 178416

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    tgtatgtgtgtgtgactgact 373
              |||||||||||||||||||||
Sbjct: 109069 tgtatgtgtgtgtgactgact 109049

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>gb|AF284554.1| Leishmania tarentolae folylpolyglutamate synthetase (FPGS) gene,
           complete cds
          Length = 1955

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 100 gagttcctggacaagtacgag 120
           |||||||||||||||||||||
Sbjct: 643 gagttcctggacaagtacgag 663

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>emb|AL109965.34|HS1121G12 Human DNA sequence from clone RP5-1121G12 on chromosome 20 Contains the
             3' end of the C20orf104 gene, the SCAND1 gene for SCAN
             domain containing 1, the 5' end of the C20orf152 gene and
             two CpG islands, complete sequence
          Length = 105230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 269   ttcattctattgaattttgcagatt 293
             |||||||| ||||||||||||||||
Sbjct: 67829 ttcattcttttgaattttgcagatt 67853

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>dbj|AK031115.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
           enriched library, clone:5930406C12
           product:unclassifiable, full insert sequence
          Length = 2772

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 353 tgtatgtgtgtgtgactgact 373
           |||||||||||||||||||||
Sbjct: 218 tgtatgtgtgtgtgactgact 198

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>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence
          Length = 159230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    tgtcaaattgtatgtgtgtgt 365
              |||||||||||||||||||||
Sbjct: 128707 tgtcaaattgtatgtgtgtgt 128687

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>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   ttctattgaattttgcagatt 293
             |||||||||||||||||||||
Sbjct: 44834 ttctattgaattttgcagatt 44854

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>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete
             sequence
          Length = 346474

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   tgtatgtgtgtgtgactgact 373
             |||||||||||||||||||||
Sbjct: 42485 tgtatgtgtgtgtgactgact 42465

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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 263    attcaattcattctattgaattttg 287
              |||||||| ||||||||||||||||
Sbjct: 917468 attcaattgattctattgaattttg 917444

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>gb|AC168852.2| Mus musculus BAC clone RP24-191L21 from chromosome 6, complete sequence
          Length = 171677

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   caaattgtatgtgtgtgtga 367
             ||||||||||||||||||||
Sbjct: 58085 caaattgtatgtgtgtgtga 58104

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>gb|AC122766.25| Mus musculus chromosome 3, clone RP24-111F24, complete sequence
          Length = 145902

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tcaaattgtatgtgtgtgtg 366
              ||||||||||||||||||||
Sbjct: 120452 tcaaattgtatgtgtgtgtg 120433

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>gb|AF288738.1| Homo sapiens epidermal growth factor receptor (EGFR) gene, complete cds,
              alternatively spliced; and 5S ribosomal RNA gene, complete
              sequence
          Length = 197496

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    ttgtatgtgtgtgtgactga 371
              ||||||||||||||||||||
Sbjct: 197324 ttgtatgtgtgtgtgactga 197305

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>gb|AC104917.9| Mus musculus chromosome 1, clone RP23-329F7, complete sequence
          Length = 205999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    ctgacttttgtatagaaatggatg 391
              ||||||||||||| ||||||||||
Sbjct: 133547 ctgacttttgtatggaaatggatg 133570

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>ref|NM_005228.3| Homo sapiens epidermal growth factor receptor (erythroblastic
            leukemia viral (v-erb-b) oncogene homolog, avian) (EGFR),
            transcript variant 1, mRNA
          Length = 5616

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  ttgtatgtgtgtgtgactga 371
            ||||||||||||||||||||
Sbjct: 5477 ttgtatgtgtgtgtgactga 5458

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>gb|AC134565.5| Mus musculus BAC clone RP24-185F21 from chromosome Y, complete sequence
          Length = 185195

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 103984 ctatattcaattcattctat 104003

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>gb|AC131783.4| Mus musculus BAC clone RP24-377P12 from chromosome Y, complete sequence
          Length = 223801

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 146400 ctatattcaattcattctat 146381

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>gb|AC129209.4| Mus musculus BAC clone RP24-318B5 from chromosome Y, complete sequence
          Length = 177935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 146704 ctatattcaattcattctat 146685

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>gb|AC127572.3| Mus musculus BAC clone RP24-231A11 from chromosome Y, complete sequence
          Length = 134145

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 27074 ctatattcaattcattctat 27055

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>gb|AC147265.2| Mus musculus BAC clone RP24-233K2 from chromosome Y, complete sequence
          Length = 171430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 81911 ctatattcaattcattctat 81892

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>gb|AC147155.2| Mus musculus BAC clone RP24-341L19 from chromosome Y, complete sequence
          Length = 156459

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 78683 ctatattcaattcattctat 78664

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>gb|AC124081.7| Mus musculus chromosome 3, clone RP24-384A12, complete sequence
          Length = 223177

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tcaaattgtatgtgtgtgtg 366
             ||||||||||||||||||||
Sbjct: 28376 tcaaattgtatgtgtgtgtg 28357

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>gb|AY588246.1| Homo sapiens epidermal growth factor receptor (erythroblastic leukemia
              viral (v-erb-b) oncogene homolog, avian) (EGFR) gene,
              complete cds
          Length = 192168

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    ttgtatgtgtgtgtgactga 371
              ||||||||||||||||||||
Sbjct: 190053 ttgtatgtgtgtgtgactga 190034

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>gb|AC132284.5| Mus musculus BAC clone RP24-351O18 from chromosome 5, complete sequence
          Length = 174681

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    tgtgtgtgtgactgactttt 376
              ||||||||||||||||||||
Sbjct: 103565 tgtgtgtgtgactgactttt 103584

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>gb|AC175390.2| Mus musculus BAC clone RP24-108F5 from chromosome y, complete sequence
          Length = 179677

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 66568 ctatattcaattcattctat 66549

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>gb|AC140335.3| Mus musculus BAC clone RP24-64C18 from chromosome Y, complete sequence
          Length = 179371

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 46453 ctatattcaattcattctat 46434

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>gb|AC073324.6| Homo sapiens BAC clone RP11-339F13 from 7, complete sequence
          Length = 125253

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ttgtatgtgtgtgtgactga 371
             ||||||||||||||||||||
Sbjct: 19524 ttgtatgtgtgtgtgactga 19505

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>gb|AC142253.3| Mus musculus BAC clone RP24-555O3 from chromosome Y, complete sequence
          Length = 153917

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 79098 ctatattcaattcattctat 79117

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>emb|Z81470.1|CEC14A6 Caenorhabditis elegans Cosmid C14A6, complete sequence
          Length = 28586

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    tcgattggcgccatgtacagaaga 39
             ||||||||||||| ||||||||||
Sbjct: 15151 tcgattggcgccaagtacagaaga 15174

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>gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome 19, complete sequence
          Length = 205768

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tcaaattgtatgtgtgtgtg 366
              ||||||||||||||||||||
Sbjct: 170762 tcaaattgtatgtgtgtgtg 170781

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>gb|AC099578.8| Mus musculus chromosome 10, clone RP23-182D17, complete sequence
          Length = 176161

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   tgtatgtgtgtgtgactgac 372
             ||||||||||||||||||||
Sbjct: 14485 tgtatgtgtgtgtgactgac 14466

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>gb|AC115885.29| Mus musculus chromosome 3, clone RP24-396D16, complete sequence
          Length = 186636

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   attgtatgtgtgtgtgactg 370
             ||||||||||||||||||||
Sbjct: 40974 attgtatgtgtgtgtgactg 40955

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>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 227741

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    gtatgtgtgtgtgactgact 373
              ||||||||||||||||||||
Sbjct: 223083 gtatgtgtgtgtgactgact 223102

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>emb|AL137839.6| Human DNA sequence from clone RP3-471C18 on chromosome 6 Contains the
             3' end of two novel genes, complete sequence
          Length = 108793

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 384   aatggatgtgagctgttgtctgtt 407
             |||| |||||||||||||||||||
Sbjct: 20492 aatgcatgtgagctgttgtctgtt 20515

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>emb|BX571701.10| Zebrafish DNA sequence from clone CH211-233M11 in linkage group 13,
            complete sequence
          Length = 154641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 371  acttttgtatagaaatggat 390
            ||||||||||||||||||||
Sbjct: 6450 acttttgtatagaaatggat 6469

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>emb|CR385090.8| Zebrafish DNA sequence from clone CH211-245M19 in linkage group 5,
             complete sequence
          Length = 140222

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    cagaagattacagaagacat 52
             ||||||||||||||||||||
Sbjct: 64776 cagaagattacagaagacat 64757

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>gb|AC151829.4| Mus musculus BAC clone RP24-151C24 from chromosome y, complete sequence
          Length = 183351

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 102546 ctatattcaattcattctat 102527

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>gb|AC182040.3| Mus musculus BAC clone RP24-26M10 from chromosome y, complete sequence
          Length = 242066

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 129336 ctatattcaattcattctat 129355

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>emb|BX897670.7| Zebrafish DNA sequence from clone DKEY-117L15 in linkage group 8,
             complete sequence
          Length = 107559

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    cagaagattacagaagacat 52
             ||||||||||||||||||||
Sbjct: 27996 cagaagattacagaagacat 27977



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    cagaagattacagaagacat 52
             ||||||||||||||||||||
Sbjct: 27023 cagaagattacagaagacat 27004

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>gb|AC104457.2| Homo sapiens chromosome 1 clone RP5-837M10, complete sequence
          Length = 168505

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    cttgtcaaattgtatgtgtgtgtg 366
              ||||||||||| ||||||||||||
Sbjct: 126705 cttgtcaaattttatgtgtgtgtg 126682

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>emb|CR603510.1| full-length cDNA clone CS0DI022YJ24 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 603

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 ttgtatgtgtgtgtgactga 371
           ||||||||||||||||||||
Sbjct: 485 ttgtatgtgtgtgtgactga 466

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>gb|AC091531.9| Mus musculus Strain C57BL6/J Chromosome 9 RP23-283E4, complete sequence
          Length = 178084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tcaaattgtatgtgtgtgtg 366
              ||||||||||||||||||||
Sbjct: 139360 tcaaattgtatgtgtgtgtg 139341

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>dbj|AB105857.1| Oncorhynchus masou ishikawai DNA, microsatellite locus Omi187TUF
          Length = 169

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 339 tttccttgtcaaattgtatgtgtgtgtg 366
           ||||||||||| ||||| ||||||||||
Sbjct: 94  tttccttgtcagattgtgtgtgtgtgtg 67

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>gb|AC182761.2| Mus musculus BAC clone RP24-91P5 from chromosome y, complete sequence
          Length = 212528

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ctatattcaattcattctat 278
            ||||||||||||||||||||
Sbjct: 6700 ctatattcaattcattctat 6719

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>gb|AC182036.2| Mus musculus BAC clone RP24-120L13 from chromosome y, complete sequence
          Length = 185554

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctatattcaattcattctat 278
             ||||||||||||||||||||
Sbjct: 11681 ctatattcaattcattctat 11662

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>ref|NM_075426.2| Caenorhabditis elegans W04E12.4 (W04E12.4) mRNA, complete cds
          Length = 684

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 16  tcgattggcgccatgtacagaaga 39
           ||||||||||||| ||||||||||
Sbjct: 647 tcgattggcgccaagtacagaaga 624

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>ref|NM_075147.1| Caenorhabditis elegans C14A6.5 (C14A6.5) mRNA, complete cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   tcgattggcgccatgtacagaaga 39
            ||||||||||||| ||||||||||
Sbjct: 1616 tcgattggcgccaagtacagaaga 1593

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>gb|AC127185.3| Rattus norvegicus  BAC CH230-28E5 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 233648

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    gtatgtgtgtgtgactgact 373
              ||||||||||||||||||||
Sbjct: 136621 gtatgtgtgtgtgactgact 136602

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>gb|AC096718.3| Homo sapiens BAC clone RP11-10P19 from 4, complete sequence
          Length = 166745

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   caaattgtatgtgtgtgtga 367
             ||||||||||||||||||||
Sbjct: 85706 caaattgtatgtgtgtgtga 85725

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>gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosome 9, complete sequence
          Length = 174016

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tcaaattgtatgtgtgtgtg 366
             ||||||||||||||||||||
Sbjct: 21337 tcaaattgtatgtgtgtgtg 21318

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>gb|AC025781.8|AC025781 Arabidopsis thaliana chromosome 1 BAC F15C21 genomic sequence, complete
             sequence
          Length = 112862

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   ttctacatgtatgtttcctt 345
             ||||||||||||||||||||
Sbjct: 15306 ttctacatgtatgtttcctt 15325

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>gb|AF062308.1|AF062308 Arabidopsis thaliana acetyl-CoA carboxylase 1 (ACC1) and acetyl-CoA
             carboxylase 2 (ACC2) genes, complete cds
          Length = 28704

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   ttctacatgtatgtttcctt 345
             ||||||||||||||||||||
Sbjct: 20247 ttctacatgtatgtttcctt 20266

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>gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, complete sequence
          Length = 155537

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   tgtatgtttccttgtcaaat 352
             ||||||||||||||||||||
Sbjct: 23032 tgtatgtttccttgtcaaat 23051

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>gb|AC148320.3| Mus musculus BAC clone RP24-555B2 from chromosome y, complete sequence
          Length = 192936

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 184141 ctatattcaattcattctat 184122

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>emb|AL731775.14| Mouse DNA sequence from clone RP23-151F3 on chromosome X, complete
             sequence
          Length = 130870

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    atgtacagaagattacagaa 47
             ||||||||||||||||||||
Sbjct: 97745 atgtacagaagattacagaa 97726

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>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
              sequence
          Length = 190267

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    tgtatgtttccttgtcaaat 352
              ||||||||||||||||||||
Sbjct: 100979 tgtatgtttccttgtcaaat 100998

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>gb|AC101658.8| Mus musculus chromosome 7, clone RP23-470G18, complete sequence
          Length = 185449

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tcaaattgtatgtgtgtgtg 366
             ||||||||||||||||||||
Sbjct: 73124 tcaaattgtatgtgtgtgtg 73105

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>dbj|AP005208.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-138C24, complete
              sequence
          Length = 171454

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 37     agattaca-gaagacattgacttctgat 63
              |||||||| |||||||||||||||||||
Sbjct: 121354 agattacatgaagacattgacttctgat 121327

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>emb|Z82070.2|CEW04E12 Caenorhabditis elegans Cosmid W04E12, complete sequence
          Length = 22939

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    tcgattggcgccatgtacagaaga 39
             ||||||||||||| ||||||||||
Sbjct: 10112 tcgattggcgccaagtacagaaga 10089

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>gb|AF064763.1|AF064763 Lactococcus lactis subsp. cremoris putative iron-binding protein and
            putative membrane spanning protein genes, partial cds;
            and unknown gene
          Length = 2461

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   ttgacttctgatgaattgtt 71
            ||||||||||||||||||||
Sbjct: 1236 ttgacttctgatgaattgtt 1255

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>gb|AC148984.3| Mus musculus BAC clone RP24-550J1 from Y, complete sequence
          Length = 174935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ctatattcaattcattctat 278
              ||||||||||||||||||||
Sbjct: 120563 ctatattcaattcattctat 120544

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>emb|X00588.1|HSEGFPRE Human mRNA for precursor of epidermal growth factor receptor
          Length = 5532

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  ttgtatgtgtgtgtgactga 371
            ||||||||||||||||||||
Sbjct: 5415 ttgtatgtgtgtgtgactga 5396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,166,730
Number of Sequences: 3902068
Number of extensions: 5166730
Number of successful extensions: 245826
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245410
Number of HSP's gapped (non-prelim): 413
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result