>Y1384_METJA (Q58779) Putative nitroreductase MJ1384 (EC 1.-.-.-)|
          Length = 198

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +1

Query: 46  ARFEPVLDDKGEWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCYFDDAVHEVLGLKD 222
           A +E      G+  +  +  E G + Q +YL A ++G+    +G ++D+ + E+L +K+
Sbjct: 127 ANYERTTRVYGDRGFRYVHMEVGHVAQNVYLMATSLGLGTVSVGAFYDNEIREILKIKE 185

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 229 TPGLSNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQVQI 50
           +P    Q+P  QHHQ   Q   Q   QH  Q ++  Q HQ     +  ++ L HPA + +
Sbjct: 544 SPHHQQQSPLLQHHQQQQQQQQQ-QQQHLHQQQQQQQHHQ----QQPQALALMHPASLAL 598

Query: 49  EQSSQ 35
             S++
Sbjct: 599 RNSNR 603

>WC1_NEUCR (Q01371) White collar 1 protein (WC1)|
          Length = 1167

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -3

Query: 307  ALGMQGDS*SGCQP-QGRPP*-NGTSFGTPGLSNQAPHEQHHQSSNQSPWQISLQHAPQG 134
            ALG      SG  P Q  PP   GT      +     H+QH Q   Q   Q   QH  Q 
Sbjct: 1062 ALGPPATGPSGGSPAQHLPPHLQGTHLNAQAMQRVHQHKQHQQHQQQHQQQHQQQHQQQH 1121

Query: 133  RELDQEHQSP 104
            ++L Q   +P
Sbjct: 1122 QQLQQHQFNP 1131

>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21|
          Length = 1629

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -3

Query: 232  GTPGLSNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQVQ 53
            G+PG  +Q PH+  HQ   Q       Q   Q  +  Q+    ++         H AQ Q
Sbjct: 1561 GSPGQQHQQPHQAQHQPQQQ-------QSQQQQAQAKQQQPQQQVQAHAHAQAQHQAQQQ 1613

Query: 52   IEQSSQ 35
             +Q  Q
Sbjct: 1614 QQQQRQ 1619

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -3

Query: 214  NQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLC---HPAQVQIEQ 44
            NQ  H Q H +  Q   Q       Q  +  Q+HQ  + N+    HL    H +Q Q+ Q
Sbjct: 3887 NQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQHQSQQQLNQ 3946

Query: 43   SSQ 35
              Q
Sbjct: 3947 QHQ 3949

>LIP1_STAAW (Q8NUI5) Lipase 1 precursor (EC 3.1.1.3) (Glycerol ester hydrolase|
           1)
          Length = 680

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 217 SNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQ 59
           S +A + Q   ++N  P Q  ++ AP   +LDQ  Q   +NE T I    P Q
Sbjct: 156 SKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNE-TEIEKVQPQQ 207

>LIP1_STAAS (Q6G604) Lipase 1 precursor (EC 3.1.1.3) (Glycerol ester hydrolase|
           1)
          Length = 680

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 217 SNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQ 59
           S +A + Q   ++N  P Q  ++ AP   +LDQ  Q   +NE T I    P Q
Sbjct: 156 SKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNE-TEIEKVQPQQ 207

>LIP1_STAAC (Q5HCM7) Lipase 1 precursor (EC 3.1.1.3) (Glycerol ester hydrolase|
           1)
          Length = 680

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 217 SNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQ 59
           S +A + Q   ++N  P Q  ++ AP   +LDQ  Q   +NE T I    P Q
Sbjct: 156 SKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNE-TEIEKVQPQQ 207

>RPTN_MOUSE (P97347) Repetin|
          Length = 1130

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 232 GTPGLSNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQVQ 53
           G  G  +Q+PH+      +QSP Q       +GR+    HQ  +  +D S H     + Q
Sbjct: 404 GQKGRQDQSPHQGQKGRQDQSPHQ-----GQKGRQDQSSHQGQKGRQDQSSHQGQKGR-Q 457

Query: 52  IEQSSQG 32
            + S QG
Sbjct: 458 DQSSHQG 464

>TBAA_SCHCO (P49741) Tubulin alpha-1A chain|
          Length = 448

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 425 KNTNCTVLLVSSRSGIQMLAYIVSRSRLDPGNRNHASIPGPGYA--GRLMIRLSTTGAPT 252
           K+TN  V L+ ++  IQ + +  +  +L   N   A +PG   A   R M  LS T A +
Sbjct: 325 KDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAIS 384

Query: 251 VKWYKL 234
             W +L
Sbjct: 385 SAWSRL 390

>BCHG_CHLAU (P33326) Bacteriochlorophyll synthase 34 kDa chain|
          Length = 310

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 403 SWFHPGQEFRCWHISSVAPGWTQEIGIMHQSLALGM 296
           +WF P   F C  I+S A GW + IG     L LGM
Sbjct: 40  TWFAPTWAFMCGAIASGALGWNESIG----RLLLGM 71

>RAD5_YARLI (Q6C2R8) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1025

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 221 TWSSKACTILRWAPLWLTTGS*VSLHTQGQGLMHDSYFLGPAWSD*RYMPTSEFLTW 391
           T S+KAC +LR    W  TG+   +H + + L     FLG A       P ++F+ W
Sbjct: 568 TVSAKACCLLRATNKWALTGT--PIHNRLEDLFSILKFLGAA-------PWNDFIYW 615

>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 259 RPP*NGTSFGTPG--LSNQAPHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDT 86
           +PP   TS   PG      +PH QH  SS  SP          G  + Q H SP ++  +
Sbjct: 447 KPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSP--------GPGPNMSQGHSSPVMHPGS 498

Query: 85  SIHLCHP 65
             H  HP
Sbjct: 499 PGH--HP 503

>PC11X_HUMAN (Q9BZA7) Protocadherin-11 X-linked precursor (Protocadherin-11)|
            (Protocadherin on the X chromosome) (PCDH-X)
            (Protocadherin-S)
          Length = 1347

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 205  PHEQHHQSSNQSPWQISLQHAPQGRELDQEHQSPRINEDTSIHLCHPAQV 56
            P    H SS+Q+    +L H+P   +   +H SPR+ +  +I LCH   V
Sbjct: 1155 PASLDHSSSSQAQAS-ALCHSPPLSQASTQHHSPRVTQ--TIALCHSPPV 1201

>KPCI_BRARE (Q90XF2) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)|
           (Atypical protein kinase C-lambda/iota)
           (aPKC-lambda/iota) (Heart and soul protein)
          Length = 588

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = -2

Query: 497 DHAQISK*TCVAVIRFLHPVALSYKNTNCTVLLVSSRSGIQMLAYIVSRSRLDPGNRNHA 318
           +HA+         + +LH   + Y++     +L+ S   I++  Y + +  L PG+    
Sbjct: 345 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 404

Query: 317 SIPGPGYAGRLMIRLSTTGAPTVKWYKL 234
               P Y    ++R    G  +V W+ L
Sbjct: 405 FCGTPNYIAPEILRGEDYGF-SVDWWAL 431

>KPCI_PONPY (Q5R4K9) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)|
          Length = 587

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = -2

Query: 497 DHAQISK*TCVAVIRFLHPVALSYKNTNCTVLLVSSRSGIQMLAYIVSRSRLDPGNRNHA 318
           +HA+         + +LH   + Y++     +L+ S   I++  Y + +  L PG+    
Sbjct: 344 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 403

Query: 317 SIPGPGYAGRLMIRLSTTGAPTVKWYKL 234
               P Y    ++R    G  +V W+ L
Sbjct: 404 FCGTPNYIAPEILRGEDYGF-SVDWWAL 430

>KPCI_HUMAN (P41743) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)|
           (Atypical protein kinase C-lambda/iota)
           (aPKC-lambda/iota) (PRKC-lambda/iota)
          Length = 587

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = -2

Query: 497 DHAQISK*TCVAVIRFLHPVALSYKNTNCTVLLVSSRSGIQMLAYIVSRSRLDPGNRNHA 318
           +HA+         + +LH   + Y++     +L+ S   I++  Y + +  L PG+    
Sbjct: 344 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 403

Query: 317 SIPGPGYAGRLMIRLSTTGAPTVKWYKL 234
               P Y    ++R    G  +V W+ L
Sbjct: 404 FCGTPNYIAPEILRGEDYGF-SVDWWAL 430

>ALDH_LINUS (Q40255) Probable aldehyde dehydrogenase (EC 1.2.1.3)|
           (Flax-inducible sequence 1)
          Length = 551

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 440 VALSYKNTNCTVLLVS-SRSGIQMLAYIVSRSRLDPGNRNHASIPGPGYAGRLMIRLSTT 264
           V   YKN+   ++L +  R    + A +VS  +L        ++ G  YAG   +R  TT
Sbjct: 443 VVTEYKNSQLPMVLEALERMHAHLTAAVVSNDQLFLQEVIGNTVNGTTYAG---LRARTT 499

Query: 263 GAPTVKWY 240
           GAP   W+
Sbjct: 500 GAPQNHWF 507

>KPCI_MOUSE (Q62074) Protein kinase C iota type (EC 2.7.11.13) (nPKC-iota)|
           (Atypical protein kinase C-lambda/iota)
           (aPKC-lambda/iota)
          Length = 586

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = -2

Query: 497 DHAQISK*TCVAVIRFLHPVALSYKNTNCTVLLVSSRSGIQMLAYIVSRSRLDPGNRNHA 318
           +HA+         + +LH   + Y++     +L+ S   I++  Y + +  L PG+    
Sbjct: 343 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 402

Query: 317 SIPGPGYAGRLMIRLSTTGAPTVKWYKL 234
               P Y    ++R    G  +V W+ L
Sbjct: 403 FCGTPNYIAPEILRGEDYGF-SVDWWAL 429

>YQF1_SCHPO (O94394) Hypothetical WD-repeat protein C126.01c in chromosome III|
          Length = 369

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -3

Query: 481 PNRLVLPS*GSFTPLLCHTRTRTVQYSWFHPGQE-FRCWHISSVAPGWTQEIGIM-HQS 311
           P+RL+    G    + C TR       W    +   RCWHI+ V     +E G   HQS
Sbjct: 165 PSRLLYKLTGHSRGIECITRQPNTDIFWTCGSESSIRCWHITKVGGSQLEEEGFWGHQS 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,458,357
Number of Sequences: 219361
Number of extensions: 2508623
Number of successful extensions: 5994
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5962
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)