ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal5f05 |
|---|---|
| Clone Library Name | barley_pub |
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 94.0 bits (232), Expect(2) = 3e-21 Identities = 50/75 (66%), Positives = 51/75 (68%) Frame = +1 Query: 286 EDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 ED KENELFVGRVAMIGFAAS+LGE ITGKGILSQLNLETGIPIYEAEP Sbjct: 82 EDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEP 141 Query: 466 XXXXXXXXXXXGAIG 510 GAIG Sbjct: 142 LLLFFILFTLLGAIG 156 Score = 70.5 bits (171), Expect = 3e-12 Identities = 32/46 (69%), Positives = 39/46 (84%) Frame = +1 Query: 328 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 K NELFVGR+A +GFA S++GE ITGKG L+QLN+ETG+PI E EP Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245 Score = 26.9 bits (58), Expect(2) = 3e-21 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = +2 Query: 518 GDRGRFVDEQPTG 556 GDRGRFVDE TG Sbjct: 159 GDRGRFVDEPTTG 171
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 96.3 bits (238), Expect(2) = 1e-20 Identities = 66/157 (42%), Positives = 78/157 (49%), Gaps = 3/157 (1%) Frame = +1 Query: 49 MAQSMLMSGVNGV--ASGRSLLQAARPSSASTPFXXXXXXXXXXXYYKHMPS-LSVRTMA 219 MAQ+ML++ V S SL++ +P S+ F S + T+A Sbjct: 1 MAQTMLLTANAKVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVA 60 Query: 220 LFGKSXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAI 399 LF ED K+NELFVGRVAMIGFAAS+LGEAI Sbjct: 61 LFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120 Query: 400 TGKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIG 510 TGKGIL+QLNLETGIPIYEAEP GAIG Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIG 157 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +1 Query: 328 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 K NELFVGR+A +G A SI+GE ITGKG L+QLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248 Score = 22.7 bits (47), Expect(2) = 1e-20 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 2/15 (13%) Frame = +2 Query: 518 GDRGRFVDE--QPTG 556 GDRG+FVD+ PTG Sbjct: 160 GDRGKFVDDPTPPTG 174
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 91.3 bits (225), Expect(2) = 1e-20 Identities = 48/75 (64%), Positives = 51/75 (68%) Frame = +1 Query: 286 EDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 ED K NELFVGRVAMIGFAAS+LGEA+TGKGIL+QLNLETGIPIYEAEP Sbjct: 73 EDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP 132 Query: 466 XXXXXXXXXXXGAIG 510 GAIG Sbjct: 133 LLLFFILFTLLGAIG 147 Score = 67.4 bits (163), Expect = 3e-11 Identities = 31/46 (67%), Positives = 38/46 (82%) Frame = +1 Query: 328 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 K NELFVGR+A +G A S++GE ITGKG L+QLN+ETGIPI + EP Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236 Score = 27.7 bits (60), Expect(2) = 1e-20 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 518 GDRGRFVDEQPTG 556 GDRG+FVD+ PTG Sbjct: 150 GDRGKFVDDPPTG 162
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 96.7 bits (239), Expect(2) = 2e-20 Identities = 66/157 (42%), Positives = 78/157 (49%), Gaps = 3/157 (1%) Frame = +1 Query: 49 MAQSMLMSGVNGV--ASGRSLLQAARPSSASTPFXXXXXXXXXXXYYKHMPS-LSVRTMA 219 MAQ+ML++ V S SL++ +P S+ F S + T+A Sbjct: 1 MAQTMLLTANAKVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVA 60 Query: 220 LFGKSXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAI 399 LF ED K+NELFVGRVAMIGFAAS+LGEAI Sbjct: 61 LFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120 Query: 400 TGKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIG 510 TGKGIL+QLNLETGIPIYEAEP GAIG Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIG 157 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +1 Query: 328 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 K NELFVGR+A +G A SI+GE ITGKG L+QLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248 Score = 21.9 bits (45), Expect(2) = 2e-20 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +2 Query: 518 GDRGRFVDE 544 GDRGRF+D+ Sbjct: 160 GDRGRFIDD 168
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 97.8 bits (242), Expect = 2e-20 Identities = 67/156 (42%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Frame = +1 Query: 49 MAQSMLMSGVNGV--ASGRSLLQAARPSSASTPFXXXXXXXXXXXYYKHMPSLSVRTMAL 222 MAQ+ML++ V S SL++ +P S+ F + T+AL Sbjct: 1 MAQTMLLTANAKVDLRSKESLVERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVAL 60 Query: 223 FGKSXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAIT 402 F KS ED K+NELFVGRVAMIGFAAS+LGEAIT Sbjct: 61 F-KSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAIT 119 Query: 403 GKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIG 510 GKGIL+QLNLETGIPIYEAEP GAIG Sbjct: 120 GKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIG 155 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +1 Query: 328 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 465 K NELFVGR+A +G A SI+GE ITGKG L+QLN ETG+PI E EP Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 246
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 33.9 bits (76), Expect = 0.32 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +1 Query: 349 GRVAMIGFAASILGEAITGKGILSQLNLETG 441 GR+AM+GF ++ EA G G+LSQL TG Sbjct: 71 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTG 101
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 33.9 bits (76), Expect = 0.32 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +1 Query: 349 GRVAMIGFAASILGEAITGKGILSQLNLETG 441 GR+AM+GF ++ EA G G+LSQL TG Sbjct: 76 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTG 106
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 33.1 bits (74), Expect = 0.54 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -2 Query: 425 SWDRMPLPVMASPKIDAAKPIMATRPTKSSFSLVKPIPPDVPKMP 291 S R PLP + P+ + P+ + P + +P+PP P++P Sbjct: 301 SLSRRPLPALPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLP 345
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 33.1 bits (74), Expect = 0.54 Identities = 14/28 (50%), Positives = 22/28 (78%) Frame = +1 Query: 349 GRVAMIGFAASILGEAITGKGILSQLNL 432 GR+AM+GF A++L E++TG+G L L + Sbjct: 21 GRLAMLGFIAALLTESLTGQGTLHFLGI 48
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 32.7 bits (73), Expect = 0.71 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +1 Query: 337 ELFVGRVAMIGFAASILGEAITGKGILSQL 426 E+ GR+AM+GF A++ E TG+ +L+QL Sbjct: 78 EIINGRLAMLGFVAALGAELSTGESVLTQL 107
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 32.7 bits (73), Expect = 0.71 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +1 Query: 337 ELFVGRVAMIGFAASILGEAITGKGIL 417 E + GR AMIGF A I E +TGKG+L Sbjct: 15 ETWNGRFAMIGFMAVIFIELVTGKGLL 41
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 32.3 bits (72), Expect = 0.92 Identities = 15/32 (46%), Positives = 24/32 (75%) Frame = +1 Query: 337 ELFVGRVAMIGFAASILGEAITGKGILSQLNL 432 E++ GR+AM+GF A I+ E +TG+G+L + L Sbjct: 356 EVWNGRIAMLGFIALII-ELVTGQGLLHMIGL 386
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 31.2 bits (69), Expect = 2.1 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 349 GRVAMIGFAASILGEAITGKGILSQLNL 432 GR+AM+GF A++ EA G G+L Q+ + Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLDQVGM 161
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 374 AKPIMATRPTKSSFSLVKPIPPDVPKMPS 288 AKP+ T+P K+S S K P +PK P+ Sbjct: 672 AKPLATTQPAKTSTSKAKTQPTSLPKQPA 700
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 30.4 bits (67), Expect = 3.5 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = +1 Query: 337 ELFVGRVAMIGFAASILGEAITGKGILSQLNL 432 E++ GR+AM+GF A +L E +TG+G L L L Sbjct: 356 EVWNGRIAMLGFLA-LLVELLTGRGPLHALGL 386
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 30.4 bits (67), Expect = 3.5 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Frame = +3 Query: 198 PLRPDHGPVRQVQDQGRAGQ--EGRCAQAQDGGRHLRHVRRDRFHQGERALRRPCCHDWL 371 P RP GP R+V + E Q D G RD + +R L P W Sbjct: 459 PDRPSRGPTREVHAAREKAERAEREAIQRSDRGLPAARETRDTMQRDDRGLAAPQFSLWK 518 Query: 372 RRVDLGRGHHRQGHPV 419 R V H +G PV Sbjct: 519 RPVVTA---HVEGQPV 531
>LEU3_AZOVI (P96197) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 360 Score = 30.0 bits (66), Expect = 4.6 Identities = 17/33 (51%), Positives = 17/33 (51%) Frame = +3 Query: 333 ERALRRPCCHDWLRRVDLGRGHHRQGHPVPAEP 431 ERA RR CH RR G HR GHP A P Sbjct: 61 ERARRR--CHPARRRRRSEMGRHRPGHPPGARP 91
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 328 KENELFVGRVAMIGFAASILGEAITGKGILSQL 426 KE EL GR+AM+ F ++ +TGKG L Sbjct: 202 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 234
>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/33 (48%), Positives = 23/33 (69%) Frame = +1 Query: 334 NELFVGRVAMIGFAASILGEAITGKGILSQLNL 432 +E + GR+AM+GFAA +L E I+G G L + L Sbjct: 359 SEAWNGRIAMLGFAAFLL-ELISGHGPLHAIGL 390
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Frame = +3 Query: 198 PLRPDHGPVRQVQDQGRAGQ--EGRCAQAQDGGRHLRHVRRDRFHQGERALRRPCCHDWL 371 P R GPV ++ + EG Q DGG RD +G+R L P W Sbjct: 458 PNRSSSGPVGEIYAAREKAERAEGETIQGGDGGLTAPRAGRDAPQRGDRGLATPQFSLWK 517 Query: 372 RRV 380 R V Sbjct: 518 RPV 520
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = +1 Query: 334 NELFVGRVAMIGFAASILGEAITGKGILSQLNL 432 +E++ GR+AM+GF+A +L E I+G G L L L Sbjct: 359 SEVWNGRLAMLGFSAFLL-ELISGHGPLHALGL 390
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = +3 Query: 252 GQEGRCAQAQDGGRHLRHVRRDRFHQGERALRRPCCHDWLRRV 380 G EG Q DGG RD +G+R L P W R V Sbjct: 479 GAEGETIQRGDGGLAAPRAERDTSQRGDRGLAAPQFSLWKRPV 521
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 416 RMPLPVMASPKIDAAKPIMATRPTKSSFSLVKPIPPDVPKMPS 288 + P P++ P + + A +P ++ SL KP PP P +PS Sbjct: 647 KKPPPLVKQPTLHGSPSAKAKQPPEAD-SLSKPAPPKEPSVPS 688
>MGAT3_HUMAN (Q09327) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 533 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -2 Query: 437 VSRFSWDRMPLPVMASPKIDAAKPIMATRPTKSSFSLVKPIPP 309 VS F W+ P+ ASP + P + P S L++P+PP Sbjct: 46 VSSFFWNNAPVTPQASP--EPGGPDLLRTPLYSHSPLLQPLPP 86
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 371 KPIMATRPTKSSFSLVKPIPPDVPKMPS 288 KP+ T+P K+S S K P +PK P+ Sbjct: 702 KPLATTQPAKTSTSKAKTQPTSLPKQPA 729
>MURG_PROMA (Q7VDZ2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 407 LPVMASPKIDAAKPIMATRPTKSSFSLVKPIPPDVPK 297 LP+ A+ K+ + I+ P + SFSL P+P VPK Sbjct: 141 LPI-AAEKLKRCRTIVTGMPVRKSFSLKNPLPIWVPK 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,939,974 Number of Sequences: 219361 Number of extensions: 980337 Number of successful extensions: 3910 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3906 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
