>XYLR_STAXY (P27159) Xylose repressor|
          Length = 383

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -2

Query: 555 TYTNDARKITKVAICMHEKANRSSIIMYSIYEKNSYLYPNGNSFIFWSLVDGPGPGV 385
           T+T++ +  T V + +  +AN S     ++YEK+ Y+  N N+ I  S+  G G G+
Sbjct: 167 TFTDELKSFTNVPVVIENEANLS-----ALYEKSLYINSNINNLITLSIHKGIGAGI 218

>LYSC_LYSEN (Q7M135) Lysyl endopeptidase (EC 3.4.21.50) (Lys-C)|
          Length = 269

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -2

Query: 423 IFWSLVDG-PGPGVRREYIHQSTTRVLLQVRRCGGSCSVTGGDSRSEEMGRRCGSGNGAA 247
           +FW    G   PG     I+    RVL Q+     SCS TG D RS+  GR   S  G  
Sbjct: 180 VFWQASGGVTEPGSSGSPIYSPEKRVLGQLHGGPSSCSATGAD-RSDYYGRVFTSWTGGG 238

Query: 246 EDDKSSLAVSPW 211
               S+  +S W
Sbjct: 239 ---TSATRLSDW 247

>RHAR_YERPS (Q66FF1) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 290

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 381 REYIHQSTTRVLLQVRRCGGSCSVTGGDSRSEEMGRRCG 265
           R+    S +  L Q+R C   C + G + R  ++  RCG
Sbjct: 214 RQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCG 252

>RHAR_YERPE (Q8ZIZ9) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 290

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 381 REYIHQSTTRVLLQVRRCGGSCSVTGGDSRSEEMGRRCG 265
           R+    S +  L Q+R C   C + G + R  ++  RCG
Sbjct: 214 RQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCG 252

>HXAAB_BRARE (Q8AWY2) Homeobox protein Hox-A10b (Hox-A10)|
          Length = 330

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 441 PNGNSFIFWSLVDGPGPGVRREYIH-----QSTTRVLLQVRRCGGSCSVTGGDSRSEEMG 277
           P+GNSF+  SL+ G   G    Y +     Q T+     +  CG    +   +S S+ + 
Sbjct: 7   PSGNSFLVDSLIHGRSEGSGHYYQNSGVYLQPTSEYSYGLSNCGYFSGLKRNESNSQNVV 66

Query: 276 RRCGSGNG 253
             CG   G
Sbjct: 67  PTCGPYQG 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,415,420
Number of Sequences: 219361
Number of extensions: 1604522
Number of successful extensions: 4985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4984
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)