ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal4o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 589 e-165
2gb|AY103661.1| Zea mays PCO126844 mRNA sequence 276 8e-71
3gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 176 6e-41
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
5gb|AF324244.1|AF324244 Phaseolus vulgaris translation initiation... 115 2e-22
6ref|NM_101583.2| Arabidopsis thaliana GTP binding / translation ... 44 0.55
7gb|BT001007.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, com... 44 0.55
8gb|AF367343.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, com... 44 0.55
9emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 o... 42 2.2
10dbj|AB206848.1| Prunus persica DNA, microsatellite marker MA053a 42 2.2
11gb|AC134459.4| Mus musculus BAC clone RP23-360L15 from chromosom... 40 8.5
12gb|AC115073.9| Mus musculus chromosome 8, clone RP24-417J18, com... 40 8.5
13gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome... 40 8.5
14gb|AC124751.4| Mus musculus BAC clone RP23-274P18 from chromosom... 40 8.5
15gb|AC116051.4| Mus musculus BAC clone RP23-4L11 from 3, complete... 40 8.5
16gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell ... 40 8.5
17gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 8.5
18gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 o... 40 8.5
19emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1 40 8.5

>dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E07, full
           insert sequence
          Length = 2082

 Score =  589 bits (297), Expect = e-165
 Identities = 544/625 (87%), Gaps = 1/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgcggatgatggcgttcagccacaaacaaatgaggcaattgcgcatgcaaaggcagc 60
           ||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||
Sbjct: 342 ctctgcggatgatggtgttcgtccacaaacaaatgaggcaattgcacatgcaaaggcagc 401

                                                                       
Query: 61  cagagtccctattgtaatagctataaataaggtagacaaggagggtgctaatccagaacg 120
             ||||||||||||| ||||| ||||| ||| |||||||||| || |||||| | |||||
Sbjct: 402 tggagtccctattgtgatagccataaacaagatagacaaggaaggagctaatgctgaacg 461

                                                                       
Query: 121 agtcatgcaagaactttcccagattggacttatgccagagatgtggggtggtgacacccc 180
            ||||||||||  |||||||| ||||||||||||||||||  |||||||||||| | |||
Sbjct: 462 ggtcatgcaagggctttcccaaattggacttatgccagaggcgtggggtggtgatatccc 521

                                                                       
Query: 181 gatggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcat 240
            ||| ||||||||||||||||||| ||||||  ||| ||||| ||||| |||||  ||||
Sbjct: 522 aatgattcagataagtgctcttaatggagagggtgtagatgaactattggagactatcat 581

                                                                       
Query: 241 gcttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaagggtacggt 300
            |||||||||||| ||| ||||||||| || || ||||||||||||||||||||||| ||
Sbjct: 582 tcttgttgctgagctgcaagaattaaaggccaatcctcatagaaatgcaaagggtacagt 641

                                                                       
Query: 301 tattgaagcatgtcttgacaaggccagaggacctcttgccaccctagttgtacagaatgg 360
           |||||||||||| |||||||| || | |||| ||||||||||||||||||||||||||||
Sbjct: 642 tattgaagcatgccttgacaaagctaaaggatctcttgccaccctagttgtacagaatgg 701

                                                                       
Query: 361 aaccttgaataagggcgatattcttgtttgcggtgaagcttttggaaagatccgtgcaat 420
           |||| | || ||||| |||||| |||| || ||||| |||||||||||||||||||||||
Sbjct: 702 aaccctaaacaagggtgatattgttgtgtgtggtgaggcttttggaaagatccgtgcaat 761

                                                                       
Query: 421 gtatgatgaccgtggaagtctcgtagaccaagcaacgccatccaacgccgtgcagattat 480
           |||||||||  ||||||  ||  | ||  | ||   ||||||||| ||||||||| ||||
Sbjct: 762 gtatgatgatggtggaaagcttatcgataaggctgggccatccaatgccgtgcaggttat 821

                                                                       
Query: 481 tggcttgaacaatgtaccccttgctggtgacgaatttgagtctgtcgatgaccttgatgt 540
           ||||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||||||
Sbjct: 822 tggcttgaataatgtaccccttgctggtgatgaatttgagtctgtggacaaccttgatgt 881

                                                                       
Query: 541 tgcacgcgaaagggcaaacgcacgtgccgatgcaatgagaattgaaaggatacatgcgaa 600
           |||||| |||||||||||||||||||| || ||| |||||||||||||||||  | ||||
Sbjct: 882 tgcacgtgaaagggcaaacgcacgtgctgaagcactgagaattgaaaggatatcttcgaa 941

                                    
Query: 601 agcaggggaagggaaaagtcactct 625
           ||| ||||||||| |||||||||||
Sbjct: 942 agctggggaaggg-aaagtcactct 965



to top

>gb|AY103661.1| Zea mays PCO126844 mRNA sequence
          Length = 1594

 Score =  276 bits (139), Expect = 8e-71
 Identities = 389/471 (82%), Gaps = 1/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 152 atgccagagatgtggggtggtgacaccccgatggttcagataagtgctcttaagggagag 211
           |||||||| |||||||||||||| ||||| |||||  |||||||||||||||  || || 
Sbjct: 10  atgccagaaatgtggggtggtgataccccaatggtcgagataagtgctcttactggggat 69

                                                                       
Query: 212 aatgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaattaaaagcg 271
           ||||||||||| ||  | || || |||||||||||||| ||||||| ||||||||| || 
Sbjct: 70  aatgttgatgaacttctggaaactgtcatgcttgttgcagagttgcaagaattaaaggca 129

                                                                       
Query: 272 aaccctcatagaaatgcaaagggtacggttattgaagcatgtcttgacaaggccagagga 331
           || || ||||| ||||| ||||| || |||||||||||||| ||||||||||||| ||| 
Sbjct: 130 aatccacataggaatgcgaagggcactgttattgaagcatgccttgacaaggccaaaggg 189

                                                                       
Query: 332 cctcttgccaccctagttgtacagaatggaaccttgaataagggcgatattcttgtttgc 391
           |||||||| ||| ||||||| |||||||||||| | || || |  |||||| |||| || 
Sbjct: 190 cctcttgctaccttagttgttcagaatggaaccctaaacaaagctgatattattgtgtgt 249

                                                                       
Query: 392 ggtgaagcttttggaaagatccgtgcaatgtatgatgaccgtggaagtctcgtagaccaa 451
           |||||||||| |||||||||||||||| ||||||||||| |||| |  ||||| ||| ||
Sbjct: 250 ggtgaagcttatggaaagatccgtgcattgtatgatgactgtgggaagctcgttgacaaa 309

                                                                       
Query: 452 gcaacgccatccaacgccgtgcagattattggcttgaacaatgtaccccttgctggtgac 511
           |||   |||||||| || |||||| |||||||| | || || || |||||||| ||||| 
Sbjct: 310 gcaggaccatccaatgcagtgcaggttattggcctcaataacgttccccttgccggtgat 369

                                                                       
Query: 512 gaatttgagtctgtcgatgaccttgatgttgcacgcgaaagggcaaacgcacgtgccgat 571
           |||||||||  ||| ||  |||||||||||||||| |||||||| || |  ||||| || 
Sbjct: 370 gaatttgaggttgttgacaaccttgatgttgcacgtgaaagggcgaatgggcgtgctgaa 429

                                                              
Query: 572 gcaatgagaattgaaaggatacatgcgaaagcaggggaagggaaaagtcac 622
           ||| || | || |||||||||  ||| ||||| |||||| |||||||||||
Sbjct: 430 gcactgcgcatagaaaggatatctgcaaaagctggggaa-ggaaaagtcac 479



to top

>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score =  176 bits (89), Expect = 6e-41
 Identities = 135/149 (90%), Gaps = 1/149 (0%)
 Strand = Plus / Plus

                                                                         
Query: 477   ttattggcttgaacaatgtaccccttgctggtgacgaatttgagtctgtcgatgaccttg 536
             ||||||||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||
Sbjct: 73999 ttattggcttgaataatgtaccccttgctggtgatgaatttgagtctgtggacaaccttg 74058

                                                                         
Query: 537   atgttgcacgcgaaagggcaaacgcacgtgccgatgcaatgagaattgaaaggatacatg 596
             |||||||||| |||||||||||||||||||| || ||| |||||||||||||||||  | 
Sbjct: 74059 atgttgcacgtgaaagggcaaacgcacgtgctgaagcactgagaattgaaaggatatctt 74118

                                          
Query: 597   cgaaagcaggggaagggaaaagtcactct 625
             ||||||| ||||||||| |||||||||||
Sbjct: 74119 cgaaagctggggaaggg-aaagtcactct 74146



 Score =  165 bits (83), Expect = 2e-37
 Identities = 134/151 (88%)
 Strand = Plus / Plus

                                                                         
Query: 259   agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 318
             ||||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 72293 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 72352

                                                                         
Query: 319   caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 378
             ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct: 72353 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 72412

                                            
Query: 379   tattcttgtttgcggtgaagcttttggaaag 409
             |||| |||| || ||||| ||||||||||||
Sbjct: 72413 tattgttgtgtgtggtgaggcttttggaaag 72443



 Score =  113 bits (57), Expect = 7e-22
 Identities = 84/93 (90%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctctgcggatgatggcgttcagccacaaacaaatgaggcaattgcgcatgcaaaggcagc 60
             ||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||
Sbjct: 71750 ctctgcggatgatggtgttcgtccacaaacaaatgaggcaattgcacatgcaaaggcagc 71809

                                              
Query: 61    cagagtccctattgtaatagctataaataaggt 93
               ||||||||||||| ||||| ||||| |||||
Sbjct: 71810 tggagtccctattgtgatagccataaacaaggt 71842



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                         
Query: 93    tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 152
             |||||||||| || |||||| | ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 71929 tagacaaggaaggagctaatgctgaacgggtcatgcaagagctttcccaaattggactta 71988

                                   
Query: 153   tgccagagatgtggggtggtga 174
             ||||||||  ||||||||||||
Sbjct: 71989 tgccagaggcgtggggtggtga 72010



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 187   tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 246
             |||||||||||||||||| ||||||  ||| ||||| ||||| |||||  |||| |||||
Sbjct: 72141 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 72200

                    
Query: 247   tgctgag 253
             |||||||
Sbjct: 72201 tgctgag 72207



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 408   agatccgtgcaatgtatgatga 429
             ||||||||||||||||||||||
Sbjct: 72572 agatccgtgcaatgtatgatga 72593



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  176 bits (89), Expect = 6e-41
 Identities = 135/149 (90%), Gaps = 1/149 (0%)
 Strand = Plus / Plus

                                                                            
Query: 477      ttattggcttgaacaatgtaccccttgctggtgacgaatttgagtctgtcgatgaccttg 536
                ||||||||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||
Sbjct: 28439075 ttattggcttgaataatgtaccccttgctggtgatgaatttgagtctgtggacaaccttg 28439134

                                                                            
Query: 537      atgttgcacgcgaaagggcaaacgcacgtgccgatgcaatgagaattgaaaggatacatg 596
                |||||||||| |||||||||||||||||||| || ||| |||||||||||||||||  | 
Sbjct: 28439135 atgttgcacgtgaaagggcaaacgcacgtgctgaagcactgagaattgaaaggatatctt 28439194

                                             
Query: 597      cgaaagcaggggaagggaaaagtcactct 625
                ||||||| ||||||||| |||||||||||
Sbjct: 28439195 cgaaagctggggaaggg-aaagtcactct 28439222



 Score =  165 bits (83), Expect = 2e-37
 Identities = 134/151 (88%)
 Strand = Plus / Plus

                                                                            
Query: 259      agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 318
                ||||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 28437369 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 28437428

                                                                            
Query: 319      caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 378
                ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct: 28437429 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 28437488

                                               
Query: 379      tattcttgtttgcggtgaagcttttggaaag 409
                |||| |||| || ||||| ||||||||||||
Sbjct: 28437489 tattgttgtgtgtggtgaggcttttggaaag 28437519



 Score =  113 bits (57), Expect = 7e-22
 Identities = 84/93 (90%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctctgcggatgatggcgttcagccacaaacaaatgaggcaattgcgcatgcaaaggcagc 60
                ||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||
Sbjct: 28436826 ctctgcggatgatggtgttcgtccacaaacaaatgaggcaattgcacatgcaaaggcagc 28436885

                                                 
Query: 61       cagagtccctattgtaatagctataaataaggt 93
                  ||||||||||||| ||||| ||||| |||||
Sbjct: 28436886 tggagtccctattgtgatagccataaacaaggt 28436918



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                            
Query: 93       tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 152
                |||||||||| || |||||| | ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 28437005 tagacaaggaaggagctaatgctgaacgggtcatgcaagagctttcccaaattggactta 28437064

                                      
Query: 153      tgccagagatgtggggtggtga 174
                ||||||||  ||||||||||||
Sbjct: 28437065 tgccagaggcgtggggtggtga 28437086



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                            
Query: 187      tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 246
                |||||||||||||||||| ||||||  ||| ||||| ||||| |||||  |||| |||||
Sbjct: 28437217 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 28437276

                       
Query: 247      tgctgag 253
                |||||||
Sbjct: 28437277 tgctgag 28437283



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 408      agatccgtgcaatgtatgatga 429
                ||||||||||||||||||||||
Sbjct: 28437648 agatccgtgcaatgtatgatga 28437669



to top

>gb|AF324244.1|AF324244 Phaseolus vulgaris translation initiation factor 2 (IF2) gene,
            complete cds; nuclear gene for chloroplast product
          Length = 4499

 Score =  115 bits (58), Expect = 2e-22
 Identities = 219/270 (81%), Gaps = 2/270 (0%)
 Strand = Plus / Plus

                                                                        
Query: 26   caaacaaatgaggcaattgcgcatgcaaaggcagccagagtccctattgtaatagctata 85
            ||||||||||| || ||||| ||||| || |||||  |||| || || || || ||||||
Sbjct: 1929 caaacaaatgaagctattgctcatgccaaagcagcgggagtacccatagtcattgctata 1988

                                                                        
Query: 86   aataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagatt 145
            || ||| |||| || || || || |||||||||||||||||||| || |||||    |||
Sbjct: 1989 aacaagatagataaagatggagcaaatccagaacgagtcatgcaggagctttcttcaatt 2048

                                                                        
Query: 146  ggacttatgccaga-gatgtggggtggtgacaccccgatggttcagataagtgctcttaa 204
            ||  | |||||||| ||| ||||||||  ||||||| ||||||| |||||||||||||||
Sbjct: 2049 ggtttaatgccagaagat-tggggtggcaacaccccaatggttccgataagtgctcttaa 2107

                                                                        
Query: 205  gggagagaatgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaatt 264
             ||  ||||||| ||||| || ||||| || || ||||||||||||||||||| |||  |
Sbjct: 2108 agggaagaatgtggatgatctcttagaaactgttatgcttgttgctgagttgcaagagct 2167

                                          
Query: 265  aaaagcgaaccctcatagaaatgcaaaggg 294
             ||||| || ||| |||||| |||||||||
Sbjct: 2168 gaaagctaatcctgatagaagtgcaaaggg 2197



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 532  ccttgatgttgcacgcgaaagggca 556
            |||||||| ||||||||||||||||
Sbjct: 2435 ccttgatgctgcacgcgaaagggca 2459



to top

>ref|NM_101583.2| Arabidopsis thaliana GTP binding / translation initiation factor
            AT1G17220 mRNA, complete cds
          Length = 3633

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 77   atagctataaataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactt 136
            ||||||||||||||| |||| || || || |||| ||||||  |||| |||||||| |||
Sbjct: 2125 atagctataaataagatagataaagaaggagctagtccagatagagtgatgcaagagctt 2184

              
Query: 137  tc 138
            ||
Sbjct: 2185 tc 2186



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 90/113 (79%)
 Strand = Plus / Plus

                                                                        
Query: 182  atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 241
            ||||||||||| |||||| | || || || ||||| ||||| || || || || ||||||
Sbjct: 2230 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2289

                                                                 
Query: 242  cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 294
            |||||||| ||| | | ||| || ||||| || || || |||||||| |||||
Sbjct: 2290 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2342



to top

>gb|BT001007.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds
          Length = 3081

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 77   atagctataaataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactt 136
            ||||||||||||||| |||| || || || |||| ||||||  |||| |||||||| |||
Sbjct: 1825 atagctataaataagatagataaagaaggagctagtccagatagagtgatgcaagagctt 1884

              
Query: 137  tc 138
            ||
Sbjct: 1885 tc 1886



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 90/113 (79%)
 Strand = Plus / Plus

                                                                        
Query: 182  atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 241
            ||||||||||| |||||| | || || || ||||| ||||| || || || || ||||||
Sbjct: 1930 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 1989

                                                                 
Query: 242  cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 294
            |||||||| ||| | | ||| || ||||| || || || |||||||| |||||
Sbjct: 1990 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2042



to top

>gb|AF367343.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds
          Length = 3631

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 77   atagctataaataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactt 136
            ||||||||||||||| |||| || || || |||| ||||||  |||| |||||||| |||
Sbjct: 2124 atagctataaataagatagataaagaaggagctagtccagatagagtgatgcaagagctt 2183

              
Query: 137  tc 138
            ||
Sbjct: 2184 tc 2185



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 90/113 (79%)
 Strand = Plus / Plus

                                                                        
Query: 182  atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 241
            ||||||||||| |||||| | || || || ||||| ||||| || || || || ||||||
Sbjct: 2229 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2288

                                                                 
Query: 242  cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 294
            |||||||| ||| | | ||| || ||||| || || || |||||||| |||||
Sbjct: 2289 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2341



to top

>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete
              sequence
          Length = 176947

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 280    tagaaatgcaaagggtacggttatt 304
              |||||||||||||| ||||||||||
Sbjct: 102571 tagaaatgcaaaggatacggttatt 102595



to top

>dbj|AB206848.1| Prunus persica DNA, microsatellite marker MA053a
          Length = 530

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 74 gtaatagctataaataaggta 94
          |||||||||||||||||||||
Sbjct: 69 gtaatagctataaataaggta 49



to top

>gb|AC134459.4| Mus musculus BAC clone RP23-360L15 from chromosome 8, complete sequence
          Length = 211773

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 601    agcaggggaagggaaaagtc 620
              ||||||||||||||||||||
Sbjct: 190891 agcaggggaagggaaaagtc 190910



to top

>gb|AC115073.9| Mus musculus chromosome 8, clone RP24-417J18, complete sequence
          Length = 161625

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 601   agcaggggaagggaaaagtc 620
             ||||||||||||||||||||
Sbjct: 50567 agcaggggaagggaaaagtc 50586



to top

>gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome 3, complete sequence
          Length = 203159

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tgcaaaggcagccagagtcc 68
              ||||||||||||||||||||
Sbjct: 129290 tgcaaaggcagccagagtcc 129309



to top

>gb|AC124751.4| Mus musculus BAC clone RP23-274P18 from chromosome 13, complete
             sequence
          Length = 160979

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 298   ggttattgaagcatgtcttgacaa 321
             ||||||| ||||||||||||||||
Sbjct: 63376 ggttatttaagcatgtcttgacaa 63399



to top

>gb|AC116051.4| Mus musculus BAC clone RP23-4L11 from 3, complete sequence
          Length = 224674

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tgcaaaggcagccagagtcc 68
             ||||||||||||||||||||
Sbjct: 38937 tgcaaaggcagccagagtcc 38956



to top

>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 175262

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   cagaatggaaccttgaataa 372
             ||||||||||||||||||||
Sbjct: 55109 cagaatggaaccttgaataa 55128



to top

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 490    caatgtaccccttgctggtgacga 513
              |||||| |||||||||||||||||
Sbjct: 901371 caatgtcccccttgctggtgacga 901394



to top

>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete
              sequence
          Length = 304204

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    cagaatggaaccttgaataa 372
              ||||||||||||||||||||
Sbjct: 262912 cagaatggaaccttgaataa 262931



to top

>emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1
          Length = 44352

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  cagaatggaaccttgaataa 372
            ||||||||||||||||||||
Sbjct: 4566 cagaatggaaccttgaataa 4585


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,901,970
Number of Sequences: 3902068
Number of extensions: 4901970
Number of successful extensions: 83303
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83203
Number of HSP's gapped (non-prelim): 99
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top