ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal5c17 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 123 bits (308), Expect = 1e-28 Identities = 73/132 (55%), Positives = 75/132 (56%) Frame = +1 Query: 7 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI*LRRGTPT 186 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI +R T Sbjct: 1 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT-D 59 Query: 187 SGRVLXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSTTFDNTMG 366 + L G FDNTMG Sbjct: 60 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMG 119 Query: 367 GXYIAPAFMDKL 402 G YIAPAFMDKL Sbjct: 120 GFYIAPAFMDKL 131 Score = 100 bits (248), Expect = 1e-21 Identities = 54/94 (57%), Positives = 58/94 (61%), Gaps = 9/94 (9%) Frame = +3 Query: 93 LGRELPWQELQGQQVHSHGS---------GEHLTXKRNTDKWKGLAYXXXXXXXXXXRXK 245 LG++L Q H S E++ KRNTDKWKGLAY R K Sbjct: 20 LGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGK 79 Query: 246 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 347 GIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYD Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYD 113
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 107 bits (266), Expect = 9e-24 Identities = 64/132 (48%), Positives = 69/132 (52%) Frame = +1 Query: 7 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI*LRRGTPT 186 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS NRF VMA E ++ Sbjct: 1 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQD 60 Query: 187 SGRVLXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSTTFDNTMG 366 + L G + FDNTMG Sbjct: 61 RWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMG 120 Query: 367 GXYIAPAFMDKL 402 G YIAP+FMDKL Sbjct: 121 GFYIAPSFMDKL 132 Score = 85.1 bits (209), Expect = 4e-17 Identities = 40/55 (72%), Positives = 42/55 (76%) Frame = +3 Query: 183 DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 347 D+WKGLAY R KG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YD Sbjct: 60 DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYD 114
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 77.0 bits (188), Expect(2) = 6e-18 Identities = 36/58 (62%), Positives = 42/58 (72%) Frame = +3 Query: 177 NTDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDL 350 ++D+WKGL R KG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+L Sbjct: 71 DSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNL 128 Score = 31.2 bits (69), Expect(2) = 6e-18 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = +1 Query: 352 DNTMGGXYIAPAFMDKL 402 DN + G YIAPAFMDKL Sbjct: 129 DNKLDGFYIAPAFMDKL 145
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 75.9 bits (185), Expect(2) = 6e-18 Identities = 35/57 (61%), Positives = 41/57 (71%) Frame = +3 Query: 180 TDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDL 350 +D+WKGL R KG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y++ Sbjct: 72 SDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNM 128 Score = 32.3 bits (72), Expect(2) = 6e-18 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = +1 Query: 352 DNTMGGXYIAPAFMDKL 402 DNT+ G YIAP+FMDKL Sbjct: 129 DNTLDGFYIAPSFMDKL 145
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 87.4 bits (215), Expect = 7e-18 Identities = 40/57 (70%), Positives = 44/57 (77%) Frame = +3 Query: 177 NTDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 347 + D+WKGLAY R KGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYD Sbjct: 55 DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYD 111 Score = 65.1 bits (157), Expect = 4e-11 Identities = 48/135 (35%), Positives = 55/135 (40%), Gaps = 3/135 (2%) Frame = +1 Query: 7 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI*LRRGTPT 186 MA+AFSSTVGAPASTPT FLGKK+K YHG + +R + A L +G T Sbjct: 1 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54 Query: 187 SG---RVLXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSTTFDN 357 + L G FDN Sbjct: 55 DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 114 Query: 358 TMGGXYIAPAFMDKL 402 TM G YIAPAFMDKL Sbjct: 115 TMDGLYIAPAFMDKL 129
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 74.3 bits (181), Expect(2) = 1e-17 Identities = 34/56 (60%), Positives = 41/56 (73%) Frame = +3 Query: 183 DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDL 350 DKWKGLAY R KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y+L Sbjct: 69 DKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNL 124 Score = 32.7 bits (73), Expect(2) = 1e-17 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = +1 Query: 352 DNTMGGXYIAPAFMDKL 402 DN M G YIAPAFMDKL Sbjct: 125 DNNMDGFYIAPAFMDKL 141
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 74.3 bits (181), Expect(2) = 1e-17 Identities = 34/56 (60%), Positives = 41/56 (73%) Frame = +3 Query: 183 DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDL 350 DKWKGLAY R KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y+L Sbjct: 69 DKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNL 124 Score = 32.7 bits (73), Expect(2) = 1e-17 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = +1 Query: 352 DNTMGGXYIAPAFMDKL 402 DN M G YIAPAFMDKL Sbjct: 125 DNNMDGFYIAPAFMDKL 141
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 71.2 bits (173), Expect(2) = 2e-17 Identities = 32/55 (58%), Positives = 39/55 (70%) Frame = +3 Query: 183 DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 347 D+WKGLA+ R KG VDSLFQAP G GTH A++SSYEY+S GLR+Y+ Sbjct: 69 DRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYN 123 Score = 35.0 bits (79), Expect(2) = 2e-17 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = +1 Query: 349 FDNTMGGXYIAPAFMDKL 402 FDN M G YIAPAFMDKL Sbjct: 124 FDNNMDGYYIAPAFMDKL 141
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 70.5 bits (171), Expect(2) = 2e-16 Identities = 32/54 (59%), Positives = 36/54 (66%) Frame = +3 Query: 183 DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 344 DKW+GLA+ R KG+ D LFQAP G GTH AVLSSYEY+S GLR Y Sbjct: 66 DKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDY 119 Score = 32.7 bits (73), Expect(2) = 2e-16 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = +1 Query: 346 TFDNTMGGXYIAPAFMDKL 402 ++DN + G YIAPAFMDKL Sbjct: 120 SYDNNVDGFYIAPAFMDKL 138
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 70.1 bits (170), Expect(2) = 6e-16 Identities = 32/56 (57%), Positives = 38/56 (67%) Frame = +3 Query: 183 DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDL 350 D+WKGL R KG+VDSLFQAPTG GTH A+++SYEYVSQ L+ Y L Sbjct: 68 DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQL 123 Score = 31.2 bits (69), Expect(2) = 6e-16 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = +1 Query: 352 DNTMGGXYIAPAFMDKL 402 DN + G YIAPAFMDKL Sbjct: 124 DNKLDGFYIAPAFMDKL 140
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 79.3 bits (194), Expect = 2e-15 Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 4/74 (5%) Frame = +3 Query: 141 SHGSGEHLTXKRNT----DKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLS 308 S+GS + L K + D+W+GLAY R KG+VDS+FQAP G GTH AVLS Sbjct: 51 SNGSFKVLAVKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLS 110 Query: 309 SYEYVSQGLRKYDL 350 SYEYVSQGLR+Y+L Sbjct: 111 SYEYVSQGLRQYNL 124 Score = 33.1 bits (74), Expect = 0.16 Identities = 37/131 (28%), Positives = 44/131 (33%), Gaps = 4/131 (3%) Frame = +1 Query: 22 SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKAN-RFTVMAAENI*LRRGTPTSG-- 192 S V APAST FLGKK V + + + K+N F V+A ++ T G Sbjct: 23 SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLA-----VKEDKQTDGDR 70 Query: 193 -RVLXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSTTFDNTMGG 369 R L G DN M G Sbjct: 71 WRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDG 130 Query: 370 XYIAPAFMDKL 402 YIAPAFMDKL Sbjct: 131 FYIAPAFMDKL 141
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 69.3 bits (168), Expect(2) = 3e-15 Identities = 33/57 (57%), Positives = 38/57 (66%) Frame = +3 Query: 177 NTDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 347 N D+WKGLAY R KG+VD LFQAP GTH AV+SSYEY+S GLR+ D Sbjct: 71 NKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQLD 127 Score = 29.6 bits (65), Expect(2) = 3e-15 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +1 Query: 337 GSTTFDNTMGGXYIAPAFMDKL 402 G DN G YIAPAF+DKL Sbjct: 122 GLRQLDNIKDGFYIAPAFLDKL 143
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 67.0 bits (162), Expect(2) = 5e-15 Identities = 31/61 (50%), Positives = 41/61 (67%) Frame = +3 Query: 165 TXKRNTDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 344 T + D+W+GLAY R KG+VDSLFQAP GTH AV+SS++Y+S GLR+Y Sbjct: 67 TQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQY 126 Query: 345 D 347 + Sbjct: 127 N 127 Score = 31.2 bits (69), Expect(2) = 5e-15 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +1 Query: 349 FDNTMGGXYIAPAFMDKL 402 FDN G YIAPAF+DKL Sbjct: 128 FDNIKDGFYIAPAFLDKL 145
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 76.3 bits (186), Expect = 2e-14 Identities = 57/137 (41%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Frame = +1 Query: 7 MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENI*LRR 174 MAAAFSSTVGAPASTPT +FLGKKL K QV++AV YHGKSS +N RF MAA+ + + Sbjct: 1 MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60 Query: 175 GTPTS-GRVLXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSTTF 351 T + L G S F Sbjct: 61 QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120 Query: 352 DNTMGGXYIAPAFMDKL 402 DN M G YIA FMDKL Sbjct: 121 DNMMDGFYIAKGFMDKL 137 Score = 75.9 bits (185), Expect = 2e-14 Identities = 34/61 (55%), Positives = 43/61 (70%) Frame = +3 Query: 165 TXKRNTDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 344 T + + D+WKGLAY R KG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y Sbjct: 59 TKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSY 118 Query: 345 D 347 + Sbjct: 119 N 119
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 68.2 bits (165), Expect = 5e-12 Identities = 33/60 (55%), Positives = 39/60 (65%) Frame = +3 Query: 171 KRNTDKWKGLAYXXXXXXXXXXRXKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDL 350 ++NTDKW LA R KG+VDSLFQAP GTH + SS+EY SQGLRKYD+ Sbjct: 63 EKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDI 122 Score = 32.0 bits (71), Expect = 0.36 Identities = 34/123 (27%), Positives = 37/123 (30%), Gaps = 1/123 (0%) Frame = +1 Query: 37 APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI*LRRGTPTSGRVLXXXX 213 A AS PT+ FLG LKK SS+ TV AAEN L Sbjct: 23 AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN---EEKNTDKWAHLAKDF 76 Query: 214 XXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSTTFDNTMGGXYIAPAFM 393 G DN +G YIAPAFM Sbjct: 77 SDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFM 136 Query: 394 DKL 402 DKL Sbjct: 137 DKL 139
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 35.4 bits (80), Expect(2) = 1e-04 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +3 Query: 237 RXKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRKYD 347 R + +VD LFQ G GTH AVLSS EY+SQ ++ Sbjct: 61 RGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN 98 Score = 27.3 bits (59), Expect(2) = 1e-04 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +1 Query: 346 TFDNTMGGXYIAPAFMDKL 402 +F+N G YI+PAF+DK+ Sbjct: 96 SFNNIEDGFYISPAFLDKM 114
>PYR1_HUMAN (P27708) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2225 Score = 34.7 bits (78), Expect = 0.056 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = -3 Query: 398 LSMKAGAMXKPPMVLSKVVLPQALADVLVGAEDGLVGAVARGRLEERVHDA-LPSGDVLL 222 LS A + P+V+SK + DV A DG+V A+A + E V +A + SGD L Sbjct: 1111 LSSAAAVSKEHPVVISKFIQEAKEIDVDAVASDGVVAAIA---ISEHVENAGVHSGDATL 1167 Query: 221 VV--GDIVRKTL 192 V DI KTL Sbjct: 1168 VTPPQDITAKTL 1179
>PYR1_MESAU (P08955) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2225 Score = 32.7 bits (73), Expect = 0.21 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = -3 Query: 398 LSMKAGAMXKPPMVLSKVVLPQALADVLVGAEDGLVGAVARGRLEERVHDA-LPSGDVLL 222 LS A + P+V+SK + DV A DG+V A+A + E V +A + SGD L Sbjct: 1111 LSSAAAVSKEHPVVISKFIQEAKEIDVDAVACDGVVSAIA---ISEHVENAGVHSGDATL 1167 Query: 221 VV--GDIVRKTL 192 V DI KTL Sbjct: 1168 VTPPQDITPKTL 1179
>ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) (ARM-1) Length = 407 Score = 32.0 bits (71), Expect = 0.36 Identities = 23/86 (26%), Positives = 41/86 (47%) Frame = -3 Query: 401 SLSMKAGAMXKPPMVLSKVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLL 222 ++++ AG + L+ V+ P+ +A +L A+ ++ER+ LPSG+ L Sbjct: 273 TMNVPAGPGGSQQVDLASVLTPEIMAPILANAD-----------VQERLLPYLPSGESLP 321 Query: 221 VVGDIVRKTLPLVGVPLLSQMFSAAM 144 D ++ TL MFSAA+ Sbjct: 322 QTADEIQNTLTSPQFQQALGMFSAAL 347
>ADRM1_HUMAN (Q16186) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) Length = 407 Score = 32.0 bits (71), Expect = 0.36 Identities = 23/86 (26%), Positives = 41/86 (47%) Frame = -3 Query: 401 SLSMKAGAMXKPPMVLSKVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLL 222 ++++ AG + L+ V+ P+ +A +L A+ ++ER+ LPSG+ L Sbjct: 273 TMNVPAGPAGGQQVDLASVLTPEIMAPILANAD-----------VQERLLPYLPSGESLP 321 Query: 221 VVGDIVRKTLPLVGVPLLSQMFSAAM 144 D ++ TL MFSAA+ Sbjct: 322 QTADEIQNTLTSPQFQQALGMFSAAL 347
>Y2573_YERPE (Q8ZDJ2) Hypothetical UPF0192 protein YPO2573/y1143/YP1141 precursor| Length = 2004 Score = 30.8 bits (68), Expect = 0.81 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -3 Query: 332 ALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKTLPLVGVPLLSQMFS 153 A A VLV D LVG A G L DA+ +++ V + + LP + + L+ Q + Sbjct: 961 ATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYI 1020 Query: 152 AAMT 141 + +T Sbjct: 1021 SVLT 1024
>ADRM1_RAT (Q9JMB5) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) Length = 407 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/86 (25%), Positives = 41/86 (47%) Frame = -3 Query: 401 SLSMKAGAMXKPPMVLSKVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLL 222 ++++ AG + L+ V+ P+ +A +L A+ ++ER+ LPSG+ L Sbjct: 273 TMNVPAGPGGSQQVDLASVLTPEIMAPILANAD-----------VQERLLPYLPSGESLP 321 Query: 221 VVGDIVRKTLPLVGVPLLSQMFSAAM 144 + ++ TL MFSAA+ Sbjct: 322 QTAEEIQNTLTSPQFQQALGMFSAAL 347
>VEGFA_BITGA (P83906) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 191 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSDVLRC 148 C R+ QDP TC+CS D LRC Sbjct: 146 CSERRKHLYKQDPLTCKCSCKAPD-LRC 172
>ACON_BOVIN (P20004) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 780 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +3 Query: 51 ADQLPREEAQEAGDLGRELPWQELQGQQVHSHGSGEHLTXKRNTDKWKG 197 AD+LPR E D + P ++ GQQV + + L DKW G Sbjct: 529 ADELPRAEFDPGQDTYQHPP-KDSSGQQVDVSPTSQRLQLLEPFDKWDG 576
>VEGFA_CANFA (Q9MYV3) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 214 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%) Frame = -2 Query: 237 WXCPAG-----RRRYRTQDPSTCRCSSSXSD 160 W P G R+ QDP TC+CS +D Sbjct: 162 WSVPCGPCSERRKHLFVQDPQTCKCSCKNTD 192
>AGRN_HUMAN (O00468) Agrin precursor| Length = 2045 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -2 Query: 249 CPSXWXCPAGRRRYRTQDPSTCRCSSSXS-DVLRCHDCEPVGLGALAMVVHGR 94 CPS C T DP+T +CS LRC CEP +V GR Sbjct: 789 CPSACQCNPHGSYGGTCDPATGQCSCRPGVGGLRCDRCEPGFWNFRGIVTDGR 841
>PRMA_BORPA (Q7W3W2) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 307 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 338 PQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKTLPLVGVPLLS 165 PQA+ + AE V + RL+ + DALP+G+ +VV +I+ L ++ P+L+ Sbjct: 208 PQAVQSTVDNAE------VNQVRLQAMLPDALPAGEFQVVVANILSNPLKVL-APMLA 258
>PRMA_BORBR (Q7WF92) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 307 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 338 PQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKTLPLVGVPLLS 165 PQA+ + AE V + RL+ + DALP+G+ +VV +I+ L ++ P+L+ Sbjct: 208 PQAVQSTVDNAE------VNQVRLQAMLPDALPAGEFQVVVANILSNPLKVL-APMLA 258
>DHSD_ASHGO (Q750S6) Succinate dehydrogenase [ubiquinone] cytochrome b small| subunit, mitochondrial precursor (CybS) (Succinate-ubiquinone reductase membrane anchor subunit) Length = 171 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 194 LPLVGVPLLSQMFSAAMTVNLLALELLPW*FTAEVTCFLSFFPRKLVG 51 +PLVG+PL++ + + +LLA +L + C + + P+++ G Sbjct: 75 VPLVGLPLVAGSGVSTLMDSLLASVMLGHCYIGFQACIIDYIPQRVYG 122
>AGRN_RAT (P25304) Agrin precursor| Length = 1959 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = -2 Query: 249 CPSXWXCPAGRRRYRTQDPSTCRCSSSXS-DVLRCHDCEP 133 CPS C T DP+T +CS LRC CEP Sbjct: 684 CPSTCHCNPHGSYSGTCDPATGQCSCRPGVGGLRCDRCEP 723
>Y4YM_RHISN (P55721) Probable translocation protein y4yM| Length = 91 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -3 Query: 344 VLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKTLPLVGVPLL 168 +LP +A V+VG G++ A + + ++LP LLVV ++ P++ PL+ Sbjct: 21 ILPPLIASVIVGLTIGIIQAATQIQ-----DESLPLTVKLLVVVAVIGLFAPVLSAPLI 74
>UVRA_LACLA (Q9CEL9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +3 Query: 3 RDGCCLLLHRRGSGFYADQLPREEAQEAGDLGRELPWQEL--QGQQVHSHGSGEHL 164 R+G + + + S +Y L E+A E + + PW++L + QQ+ +G+G+ L Sbjct: 302 REGAIIYWYGKASTYYPALL--EQAMEQFGIDLDRPWEKLSEKEQQIVLYGNGDKL 355
>VEGFA_HUMAN (P15692) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 232 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 187 CSERRKHLFVQDPQTCKCSCKNTD 210
>VEGFA_COTJA (P67965) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 216 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 171 CSERRKHLFVQDPQTCKCSCKFTD 194
>VEGFA_CHICK (P67964) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 216 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 171 CSERRKHLFVQDPQTCKCSCKFTD 194
>VEGFA_RAT (P16612) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 214 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 169 CSERRKHLFVQDPQTCKCSCKNTD 192
>VEGFA_MOUSE (Q00731) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 214 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 169 CSERRKHLFVQDPQTCKCSCKNTD 192
>PYR1_SQUAC (Q91437) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2242 Score = 27.7 bits (60), Expect = 6.8 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Frame = -3 Query: 398 LSMKAGAMXKPPMVLSKVVLPQALADVLVGAEDGLVGAVARGRLEERVHDA-LPSGDVLL 222 LS + P+V+SK + DV A DG+V AVA + E V +A + SGD L Sbjct: 1116 LSSAVAVSKEHPVVISKFIQEAKEIDVDAVACDGVVIAVA---ISEHVENAGVHSGDATL 1172 Query: 221 VV--GDIVRKT 195 V D+ +KT Sbjct: 1173 VTPPQDLNQKT 1183
>VEGFA_PIG (P49151) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 145 CSERRKHLFVQDPQTCKCSCKNTD 168
>VEGFA_MESAU (Q99PS1) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 145 CSERRKHLFVQDPQTCKCSCKNTD 168
>VEGFA_HORSE (Q9GKR0) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 145 CSERRKHLFVQDPQTCKCSCKNTD 168
>VEGFA_BOVIN (P15691) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 145 CSERRKHLFVQDPQTCKCSCKNTD 168
>RNF31_MOUSE (Q924T7) RING finger protein 31| Length = 1066 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Frame = -2 Query: 228 PAGRRRYRTQDPSTCRCSSSXSDVLRCHDCEPVGLGALAMVVHG---RGHLLLELLP 67 P R + P C S L C C V A ++ HG R H L + LP Sbjct: 200 PGPRPSAQGSTPGPCFLCGSAPGTLHCPACNQVSCPACDILFHGHPSRAHHLRQALP 256
>XRCC3_HUMAN (O43542) DNA-repair protein XRCC3 (X-ray repair cross-complementing| protein 3) Length = 346 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/62 (37%), Positives = 31/62 (50%) Frame = -3 Query: 221 VVGDIVRKTLPLVGVPLLSQMFSAAMTVNLLALELLPW*FTAEVTCFLSFFPRKLVGVEA 42 V+ ++R LPL G+ L+ SA T LAL+L C FPR+ G+EA Sbjct: 88 VLDALLRGGLPLDGITELAGRSSAGKTQ--LALQL----------CLAVQFPRQHGGLEA 135 Query: 41 GA 36 GA Sbjct: 136 GA 137
>SYCP2_HUMAN (Q9BX26) Synaptonemal complex protein 2 (SCP-2) (Synaptonemal complex| lateral element protein) (hsSCP2) Length = 1530 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%) Frame = +3 Query: 57 QLPREEAQEAGDL-----GRELPWQELQGQQVHSHGSGEHLTXKR 176 Q REE+ A L GRE W ++ H G +HL+ KR Sbjct: 1243 QSKREESHLASSLSKSSEGREKTWFDMPCDATHVSGPTQHLSRKR 1287
>VEGFA_BRARE (O73682) Vascular endothelial growth factor precursor| Length = 188 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCS 175 C R+R QDP TC+CS Sbjct: 144 CSERRKRLYVQDPLTCKCS 162
>HISX_CARHZ (Q3AD53) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 425 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Frame = -3 Query: 359 VLSKVVLPQALADVLVGAEDGLVGA--------VARGRLEERVHDALPSGDVLLVVGDIV 204 + K+V D+L G + +V A +A L + HD+L SG V+ G++ Sbjct: 213 IAKKLVYGTVNIDMLAGPSEVVVIADSSAKPEYLAADMLSQAEHDSLASGVVITWDGELA 272 Query: 203 RKT 195 RKT Sbjct: 273 RKT 275
>VEGFA_CAVPO (P26617) Vascular endothelial growth factor A (VEGF-A) (Vascular| permeability factor) (VPF) Length = 164 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 231 CPAGRRRYRTQDPSTCRCSSSXSD 160 C R+ QDP TC+CS +D Sbjct: 119 CSERRKHLFVQDPQTCKCSCRNTD 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,693,067 Number of Sequences: 219361 Number of extensions: 981709 Number of successful extensions: 3811 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 3681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3809 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
