ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal4n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473653.1| Oryza sativa (japonica cultivar-group), predic... 383 e-103
2emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 383 e-103
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 383 e-103
4dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clon... 383 e-103
5dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 383 e-103
6gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete... 42 2.1
7ref|XM_322204.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
8ref|XM_952150.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
9ref|NM_138101.2| Drosophila melanogaster CG3579-RA (CG3579), mRNA 42 2.1
10gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, r... 42 2.1
11gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71... 42 2.1
12gb|AE010362.1| Methanopyrus kandleri AV19 section 61 of 157 of t... 40 8.2
13ref|XM_517637.1| PREDICTED: Pan troglodytes similar to triple fu... 40 8.2
14ref|NM_001003007.1| Canis familiaris elastase 1, pancreatic (ELA... 40 8.2
15gb|U48436.1|HSU48436 Homo sapiens fragile X mental retardation p... 40 8.2
16gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 8.2
17gb|AC161872.7| Mus musculus BAC clone RP24-88E7 from chromosome ... 40 8.2
18gb|AC161873.5| Mus musculus BAC clone RP24-100P9 from chromosome... 40 8.2
19ref|NM_002025.2| Homo sapiens AF4/FMR2 family, member 2 (AFF2), ... 40 8.2
20ref|NM_007118.2| Homo sapiens triple functional domain (PTPRF in... 40 8.2
21gb|AC149235.1| Pan troglodytes chromosome X clone PTB-100E10 map... 40 8.2
22gb|AC164155.2| Mus musculus BAC clone RP24-548I6 from chromosome... 40 8.2
23gb|AC107456.9| Mus musculus chromosome 3, clone RP23-273L6, comp... 40 8.2
24ref|XM_383876.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.2
25gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.2
26emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.2
27gb|AC161460.5| Mus musculus BAC clone RP23-125A3 from chromosome... 40 8.2
28gb|AE005747.1| Caulobacter crescentus CB15 section 73 of 359 of ... 40 8.2
29gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta ... 40 8.2
30gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 8.2
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
32dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 8.2
33gb|AC005731.2| Human X BAC RP11-159I8 (Roswell Park Cancer Insti... 40 8.2
34gb|BC035585.1| Homo sapiens, Similar to triple functional domain... 40 8.2
35dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
36dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
37gb|AC004551.1|AC004551 Homo sapiens 12q24.1 PAC RPCI1-71H24 (Ros... 40 8.2
38emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.2
39dbj|AB100595.1| Canis familiaris ELS1 mRNA for elastase 1, compl... 40 8.2
40gb|AF091395.1|AF091395 Homo sapiens Trio isoform mRNA, complete cds 40 8.2
41gb|U42390.1|HSU42390 Homo sapiens Trio mRNA, complete cds 40 8.2
42gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-... 40 8.2
43emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4,... 40 8.2
44dbj|AB209754.1| Homo sapiens mRNA for triple functional domain (... 40 8.2 
>ref|XM_473653.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score =  383 bits (193), Expect = e-103
 Identities = 421/497 (84%)
 Strand = Plus / Plus

                                                                        
Query: 26   gagcccggccaggtcacctacgcctcggcgatcaacgtgtactgccggctggggcggagc 85
            ||||| |||||||||||||| || || |  |||||||| ||||||| ||| |||||||||
Sbjct: 1189 gagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagc 1248

                                                                        
Query: 86   gacagggcggaggccgtcttctcggagatgatcgaccggggcttcgacaagtgcgtggtg 145
            |||||||||||  | |||||||||||||||||||| || ||||| |||||||| ||||| 
Sbjct: 1249 gacagggcggaatcggtcttctcggagatgatcgatcgaggctttgacaagtgtgtggtt 1308

                                                                        
Query: 146  gcgtacggcaacatgatctccatgtacgggcagatcaggagggcgtcggacgccacgagg 205
            || || || ||||||||||||||||| ||| ||||||| || ||||||||||| | ||||
Sbjct: 1309 gcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgagg 1368

                                                                        
Query: 206  ctgctggcgctgatgaagcagaaggggtgcgagcccaacgtgtgggtgtacaactcgctc 265
            ||||| ||  |||||||| |||||||||||||||| ||  | |||||||||||||| |||
Sbjct: 1369 ctgcttgctgtgatgaagaagaaggggtgcgagcctaatatctgggtgtacaactccctc 1428

                                                                        
Query: 266  ctggacatgcgcggcaagctcggggactcgaggcaggccgagaagatatggaaggagatg 325
            |||||||||| ||| |  |||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 1429 ctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatg 1488

                                                                        
Query: 326  atgcggcgcaaggtgcagcctgaccgggtgagctacacggccatcgtcggcgcgttcaac 385
            ||||| |||||| | ||||||||| || | |||||||| || ||| ||  ||||||||||
Sbjct: 1489 atgcgccgcaagattcagcctgacaggatcagctacaccgcgatcatcaacgcgttcaac 1548

                                                                        
Query: 386  cggtcgggggagctcgaccggtgcatggactactaccaggagttcagggagacgggaggg 445
            ||||| || || || |||||||||||||| |  |||||||||||||||||||| ||||| 
Sbjct: 1549 cggtcaggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggagga 1608

                                                                        
Query: 446  acggtggacaagaccctggccggcctcatggtgggggtgttctgcaaaaccagccggttc 505
            | |||||||| | ||||||| || |||||||| ||||||||||  |||  |||||| |||
Sbjct: 1609 aaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattc 1668

                             
Query: 506  aacgacctcatccagct 522
            ||||| |||||| ||||
Sbjct: 1669 aacgagctcatcgagct 1685
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>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
              complete sequence
          Length = 186325

 Score =  383 bits (193), Expect = e-103
 Identities = 421/497 (84%)
 Strand = Plus / Plus

                                                                          
Query: 26     gagcccggccaggtcacctacgcctcggcgatcaacgtgtactgccggctggggcggagc 85
              ||||| |||||||||||||| || || |  |||||||| ||||||| ||| |||||||||
Sbjct: 103318 gagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagc 103377

                                                                          
Query: 86     gacagggcggaggccgtcttctcggagatgatcgaccggggcttcgacaagtgcgtggtg 145
              |||||||||||  | |||||||||||||||||||| || ||||| |||||||| ||||| 
Sbjct: 103378 gacagggcggaatcggtcttctcggagatgatcgatcgaggctttgacaagtgtgtggtt 103437

                                                                          
Query: 146    gcgtacggcaacatgatctccatgtacgggcagatcaggagggcgtcggacgccacgagg 205
              || || || ||||||||||||||||| ||| ||||||| || ||||||||||| | ||||
Sbjct: 103438 gcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgagg 103497

                                                                          
Query: 206    ctgctggcgctgatgaagcagaaggggtgcgagcccaacgtgtgggtgtacaactcgctc 265
              ||||| ||  |||||||| |||||||||||||||| ||  | |||||||||||||| |||
Sbjct: 103498 ctgcttgctgtgatgaagaagaaggggtgcgagcctaatatctgggtgtacaactccctc 103557

                                                                          
Query: 266    ctggacatgcgcggcaagctcggggactcgaggcaggccgagaagatatggaaggagatg 325
              |||||||||| ||| |  |||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 103558 ctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatg 103617

                                                                          
Query: 326    atgcggcgcaaggtgcagcctgaccgggtgagctacacggccatcgtcggcgcgttcaac 385
              ||||| |||||| | ||||||||| || | |||||||| || ||| ||  ||||||||||
Sbjct: 103618 atgcgccgcaagattcagcctgacaggatcagctacaccgcgatcatcaacgcgttcaac 103677

                                                                          
Query: 386    cggtcgggggagctcgaccggtgcatggactactaccaggagttcagggagacgggaggg 445
              ||||| || || || |||||||||||||| |  |||||||||||||||||||| ||||| 
Sbjct: 103678 cggtcaggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggagga 103737

                                                                          
Query: 446    acggtggacaagaccctggccggcctcatggtgggggtgttctgcaaaaccagccggttc 505
              | |||||||| | ||||||| || |||||||| ||||||||||  |||  |||||| |||
Sbjct: 103738 aaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattc 103797

                               
Query: 506    aacgacctcatccagct 522
              ||||| |||||| ||||
Sbjct: 103798 aacgagctcatcgagct 103814
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  383 bits (193), Expect = e-103
 Identities = 421/497 (84%)
 Strand = Plus / Plus

                                                                            
Query: 26       gagcccggccaggtcacctacgcctcggcgatcaacgtgtactgccggctggggcggagc 85
                ||||| |||||||||||||| || || |  |||||||| ||||||| ||| |||||||||
Sbjct: 29430302 gagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagc 29430361

                                                                            
Query: 86       gacagggcggaggccgtcttctcggagatgatcgaccggggcttcgacaagtgcgtggtg 145
                |||||||||||  | |||||||||||||||||||| || ||||| |||||||| ||||| 
Sbjct: 29430362 gacagggcggaatcggtcttctcggagatgatcgatcgaggctttgacaagtgtgtggtt 29430421

                                                                            
Query: 146      gcgtacggcaacatgatctccatgtacgggcagatcaggagggcgtcggacgccacgagg 205
                || || || ||||||||||||||||| ||| ||||||| || ||||||||||| | ||||
Sbjct: 29430422 gcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgagg 29430481

                                                                            
Query: 206      ctgctggcgctgatgaagcagaaggggtgcgagcccaacgtgtgggtgtacaactcgctc 265
                ||||| ||  |||||||| |||||||||||||||| ||  | |||||||||||||| |||
Sbjct: 29430482 ctgcttgctgtgatgaagaagaaggggtgcgagcctaatatctgggtgtacaactccctc 29430541

                                                                            
Query: 266      ctggacatgcgcggcaagctcggggactcgaggcaggccgagaagatatggaaggagatg 325
                |||||||||| ||| |  |||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 29430542 ctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatg 29430601

                                                                            
Query: 326      atgcggcgcaaggtgcagcctgaccgggtgagctacacggccatcgtcggcgcgttcaac 385
                ||||| |||||| | ||||||||| || | |||||||| || ||| ||  ||||||||||
Sbjct: 29430602 atgcgccgcaagattcagcctgacaggatcagctacaccgcgatcatcaacgcgttcaac 29430661

                                                                            
Query: 386      cggtcgggggagctcgaccggtgcatggactactaccaggagttcagggagacgggaggg 445
                ||||| || || || |||||||||||||| |  |||||||||||||||||||| ||||| 
Sbjct: 29430662 cggtcaggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggagga 29430721

                                                                            
Query: 446      acggtggacaagaccctggccggcctcatggtgggggtgttctgcaaaaccagccggttc 505
                | |||||||| | ||||||| || |||||||| ||||||||||  |||  |||||| |||
Sbjct: 29430722 aaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattc 29430781

                                 
Query: 506      aacgacctcatccagct 522
                ||||| |||||| ||||
Sbjct: 29430782 aacgagctcatcgagct 29430798



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 129      tcgacaagtgcgtggtggcg 148
                ||||||||||||||||||||
Sbjct: 21038801 tcgacaagtgcgtggtggcg 21038820
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>dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132A21, full
            insert sequence
          Length = 4615

 Score =  383 bits (193), Expect = e-103
 Identities = 421/497 (84%)
 Strand = Plus / Minus

                                                                        
Query: 26   gagcccggccaggtcacctacgcctcggcgatcaacgtgtactgccggctggggcggagc 85
            ||||| |||||||||||||| || || |  |||||||| ||||||| ||| |||||||||
Sbjct: 2352 gagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagc 2293

                                                                        
Query: 86   gacagggcggaggccgtcttctcggagatgatcgaccggggcttcgacaagtgcgtggtg 145
            |||||||||||  | |||||||||||||||||||| || ||||| |||||||| ||||| 
Sbjct: 2292 gacagggcggaatcggtcttctcggagatgatcgatcgaggctttgacaagtgtgtggtt 2233

                                                                        
Query: 146  gcgtacggcaacatgatctccatgtacgggcagatcaggagggcgtcggacgccacgagg 205
            || || || ||||||||||||||||| ||| ||||||| || ||||||||||| | ||||
Sbjct: 2232 gcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgagg 2173

                                                                        
Query: 206  ctgctggcgctgatgaagcagaaggggtgcgagcccaacgtgtgggtgtacaactcgctc 265
            ||||| ||  |||||||| |||||||||||||||| ||  | |||||||||||||| |||
Sbjct: 2172 ctgcttgctgtgatgaagaagaaggggtgcgagcctaatatctgggtgtacaactccctc 2113

                                                                        
Query: 266  ctggacatgcgcggcaagctcggggactcgaggcaggccgagaagatatggaaggagatg 325
            |||||||||| ||| |  |||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 2112 ctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatg 2053

                                                                        
Query: 326  atgcggcgcaaggtgcagcctgaccgggtgagctacacggccatcgtcggcgcgttcaac 385
            ||||| |||||| | ||||||||| || | |||||||| || ||| ||  ||||||||||
Sbjct: 2052 atgcgccgcaagattcagcctgacaggatcagctacaccgcgatcatcaacgcgttcaac 1993

                                                                        
Query: 386  cggtcgggggagctcgaccggtgcatggactactaccaggagttcagggagacgggaggg 445
            ||||| || || || |||||||||||||| |  |||||||||||||||||||| ||||| 
Sbjct: 1992 cggtcaggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggagga 1933

                                                                        
Query: 446  acggtggacaagaccctggccggcctcatggtgggggtgttctgcaaaaccagccggttc 505
            | |||||||| | ||||||| || |||||||| ||||||||||  |||  |||||| |||
Sbjct: 1932 aaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattc 1873

                             
Query: 506  aacgacctcatccagct 522
            ||||| |||||| ||||
Sbjct: 1872 aacgagctcatcgagct 1856
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>dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G18, full
            insert sequence
          Length = 2259

 Score =  383 bits (193), Expect = e-103
 Identities = 421/497 (84%)
 Strand = Plus / Plus

                                                                        
Query: 26   gagcccggccaggtcacctacgcctcggcgatcaacgtgtactgccggctggggcggagc 85
            ||||| |||||||||||||| || || |  |||||||| ||||||| ||| |||||||||
Sbjct: 1251 gagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagc 1310

                                                                        
Query: 86   gacagggcggaggccgtcttctcggagatgatcgaccggggcttcgacaagtgcgtggtg 145
            |||||||||||  | |||||||||||||||||||| || ||||| |||||||| ||||| 
Sbjct: 1311 gacagggcggaatcggtcttctcggagatgatcgatcgaggctttgacaagtgtgtggtt 1370

                                                                        
Query: 146  gcgtacggcaacatgatctccatgtacgggcagatcaggagggcgtcggacgccacgagg 205
            || || || ||||||||||||||||| ||| ||||||| || ||||||||||| | ||||
Sbjct: 1371 gcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgagg 1430

                                                                        
Query: 206  ctgctggcgctgatgaagcagaaggggtgcgagcccaacgtgtgggtgtacaactcgctc 265
            ||||| ||  |||||||| |||||||||||||||| ||  | |||||||||||||| |||
Sbjct: 1431 ctgcttgctgtgatgaagaagaaggggtgcgagcctaatatctgggtgtacaactccctc 1490

                                                                        
Query: 266  ctggacatgcgcggcaagctcggggactcgaggcaggccgagaagatatggaaggagatg 325
            |||||||||| ||| |  |||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 1491 ctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatg 1550

                                                                        
Query: 326  atgcggcgcaaggtgcagcctgaccgggtgagctacacggccatcgtcggcgcgttcaac 385
            ||||| |||||| | ||||||||| || | |||||||| || ||| ||  ||||||||||
Sbjct: 1551 atgcgccgcaagattcagcctgacaggatcagctacaccgcgatcatcaacgcgttcaac 1610

                                                                        
Query: 386  cggtcgggggagctcgaccggtgcatggactactaccaggagttcagggagacgggaggg 445
            ||||| || || || |||||||||||||| |  |||||||||||||||||||| ||||| 
Sbjct: 1611 cggtcaggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggagga 1670

                                                                        
Query: 446  acggtggacaagaccctggccggcctcatggtgggggtgttctgcaaaaccagccggttc 505
            | |||||||| | ||||||| || |||||||| ||||||||||  |||  |||||| |||
Sbjct: 1671 aaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattc 1730

                             
Query: 506  aacgacctcatccagct 522
            ||||| |||||| ||||
Sbjct: 1731 aacgagctcatcgagct 1747
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>gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete sequence
          Length = 163517

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 318   aggagatgatgcggcgcaagg 338
             |||||||||||||||||||||
Sbjct: 36313 aggagatgatgcggcgcaagg 36333
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>ref|XM_322204.1| Neurospora crassa OR74A hypothetical protein (NCU00119.1) partial
           mRNA
          Length = 3171

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 313 atggaaggagatgatgcggcgcaag 337
           ||||||||||||||||| |||||||
Sbjct: 360 atggaaggagatgatgctgcgcaag 384
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>ref|XM_952150.1| Neurospora crassa OR74A hypothetical protein (NCU00119.1) partial
           mRNA
          Length = 3171

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 313 atggaaggagatgatgcggcgcaag 337
           ||||||||||||||||| |||||||
Sbjct: 360 atggaaggagatgatgctgcgcaag 384
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>ref|NM_138101.2| Drosophila melanogaster CG3579-RA (CG3579), mRNA
          Length = 927

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 318 aggagatgatgcggcgcaagg 338
           |||||||||||||||||||||
Sbjct: 431 aggagatgatgcggcgcaagg 451
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>gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, region 60D-60D, BAC clone
              BACR11C07, complete sequence
          Length = 171151

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 318    aggagatgatgcggcgcaagg 338
              |||||||||||||||||||||
Sbjct: 143362 aggagatgatgcggcgcaagg 143382
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>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete
              sequence
          Length = 310958

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 318    aggagatgatgcggcgcaagg 338
              |||||||||||||||||||||
Sbjct: 231415 aggagatgatgcggcgcaagg 231435
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>gb|AE010362.1| Methanopyrus kandleri AV19 section 61 of 157 of the complete genome
          Length = 11952

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  gtcgggggagctcgaccggt 407
            ||||||||||||||||||||
Sbjct: 7548 gtcgggggagctcgaccggt 7529
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>ref|XM_517637.1| PREDICTED: Pan troglodytes similar to triple functional domain
           (PTPRF interacting) (LOC461730), mRNA
          Length = 3633

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 509 gacctcatccagctgctcagggac 532
           ||||||||||||| ||||||||||
Sbjct: 898 gacctcatccagcagctcagggac 921
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>ref|NM_001003007.1| Canis familiaris elastase 1, pancreatic (ELA1), mRNA
          Length = 938

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 541 gcaggacacccagctggaca 560
           ||||||||||||||||||||
Sbjct: 402 gcaggacacccagctggaca 383
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>gb|U48436.1|HSU48436 Homo sapiens fragile X mental retardation protein FMR2p (FMR2) mRNA,
            complete cds
          Length = 13695

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  agatatggaaggagatgatg 328
            ||||||||||||||||||||
Sbjct: 9827 agatatggaaggagatgatg 9808
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    ctacacggccatcgtcggcg 377
              ||||||||||||||||||||
Sbjct: 794006 ctacacggccatcgtcggcg 793987
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>gb|AC161872.7| Mus musculus BAC clone RP24-88E7 from chromosome 14, complete
            sequence
          Length = 226399

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  gaagatatggaaggagatga 326
            ||||||||||||||||||||
Sbjct: 7368 gaagatatggaaggagatga 7387
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>gb|AC161873.5| Mus musculus BAC clone RP24-100P9 from chromosome 14, complete sequence
          Length = 240703

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   gaagatatggaaggagatga 326
             ||||||||||||||||||||
Sbjct: 90250 gaagatatggaaggagatga 90269
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>ref|NM_002025.2| Homo sapiens AF4/FMR2 family, member 2 (AFF2), mRNA
          Length = 13746

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  agatatggaaggagatgatg 328
            ||||||||||||||||||||
Sbjct: 9878 agatatggaaggagatgatg 9859
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>ref|NM_007118.2| Homo sapiens triple functional domain (PTPRF interacting) (TRIO),
            mRNA
          Length = 10244

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 509  gacctcatccagctgctcagggac 532
            ||||||||||||| ||||||||||
Sbjct: 2203 gacctcatccagcagctcagggac 2226
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>gb|AC149235.1| Pan troglodytes chromosome X clone PTB-100E10 map human ortholog q28,
              complete sequence
          Length = 183411

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    agatatggaaggagatgatg 328
              ||||||||||||||||||||
Sbjct: 101431 agatatggaaggagatgatg 101412
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>gb|AC164155.2| Mus musculus BAC clone RP24-548I6 from chromosome 14, complete sequence
          Length = 215419

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   gaagatatggaaggagatga 326
             ||||||||||||||||||||
Sbjct: 79625 gaagatatggaaggagatga 79644
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>gb|AC107456.9| Mus musculus chromosome 3, clone RP23-273L6, complete sequence
          Length = 185661

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 522   tgctcagggacatgaaggtg 541
             ||||||||||||||||||||
Sbjct: 61927 tgctcagggacatgaaggtg 61908
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>ref|XM_383876.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03700.1)
           partial mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 571 catgatcgttctcaacagcc 590
           ||||||||||||||||||||
Sbjct: 228 catgatcgttctcaacagcc 247
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    cgaggctgctggcgctgatg 220
              ||||||||||||||||||||
Sbjct: 549170 cgaggctgctggcgctgatg 549151
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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 502   gttcaacgacctcatccagctgctcagggaca 533
             |||||||||||| ||||||  |||||||||||
Sbjct: 10987 gttcaacgaccttatccagaagctcagggaca 11018
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>gb|AC161460.5| Mus musculus BAC clone RP23-125A3 from chromosome 14, complete sequence
          Length = 208571

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    gaagatatggaaggagatga 326
              ||||||||||||||||||||
Sbjct: 154968 gaagatatggaaggagatga 154987
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>gb|AE005747.1| Caulobacter crescentus CB15 section 73 of 359 of the complete genome
          Length = 11070

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 35   caggtcacctacgcctcggcgatc 58
            |||| |||||||||||||||||||
Sbjct: 9998 caggccacctacgcctcggcgatc 9975
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>gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta locus  section 2 of 4 of the
              complete region
          Length = 400099

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    gaagatatggaaggagatga 326
              ||||||||||||||||||||
Sbjct: 154887 gaagatatggaaggagatga 154868
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ggccatcgtcggcgcgttca 383
              ||||||||||||||||||||
Sbjct: 511718 ggccatcgtcggcgcgttca 511699
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 129      tcgacaagtgcgtggtggcg 148
                ||||||||||||||||||||
Sbjct: 11654703 tcgacaagtgcgtggtggcg 11654722



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 129      tcgacaagtgcgtggtggcg 148
                ||||||||||||||||||||
Sbjct: 11604862 tcgacaagtgcgtggtggcg 11604881
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 502     gttcaacgacctcatccagctgctcagggaca 533
               |||||||||||| ||||||  |||||||||||
Sbjct: 2483811 gttcaacgaccttatccagaagctcagggaca 2483842
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>gb|AC005731.2| Human X BAC RP11-159I8 (Roswell Park Cancer Institute Human BAC Library),
              Cosmid LL0XNC01-3C3 (LLNL X Chromosome Library), and BAC
              GS1-92B2 (Genome Systems Human BAC Library) complete
              sequence
          Length = 143944

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    agatatggaaggagatgatg 328
              ||||||||||||||||||||
Sbjct: 135586 agatatggaaggagatgatg 135567
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>gb|BC035585.1| Homo sapiens, Similar to triple functional domain (PTPRF
            interacting), clone IMAGE:5497679, mRNA, partial cds
          Length = 5009

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 509  gacctcatccagctgctcagggac 532
            ||||||||||||| ||||||||||
Sbjct: 2146 gacctcatccagcagctcagggac 2169
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  tcgacaagtgcgtggtggcg 148
            ||||||||||||||||||||
Sbjct: 3245 tcgacaagtgcgtggtggcg 3264
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>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0414E10
          Length = 141760

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    tcgacaagtgcgtggtggcg 148
              ||||||||||||||||||||
Sbjct: 132589 tcgacaagtgcgtggtggcg 132608



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   tcgacaagtgcgtggtggcg 148
             ||||||||||||||||||||
Sbjct: 82748 tcgacaagtgcgtggtggcg 82767
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>gb|AC004551.1|AC004551 Homo sapiens 12q24.1 PAC RPCI1-71H24 (Roswell Park Cancer Institute Human
              PAC library) complete sequence
          Length = 162346

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 530    gacatgaaggtgcaggacacccag 553
              |||||| |||||||||||||||||
Sbjct: 150859 gacatggaggtgcaggacacccag 150836
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 361     cacggccatcgtcggcgcgt 380
               ||||||||||||||||||||
Sbjct: 2615594 cacggccatcgtcggcgcgt 2615575
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>dbj|AB100595.1| Canis familiaris ELS1 mRNA for elastase 1, complete cds
          Length = 938

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 541 gcaggacacccagctggaca 560
           ||||||||||||||||||||
Sbjct: 402 gcaggacacccagctggaca 383
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>gb|AF091395.1|AF091395 Homo sapiens Trio isoform mRNA, complete cds
          Length = 9449

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 509  gacctcatccagctgctcagggac 532
            ||||||||||||| ||||||||||
Sbjct: 2086 gacctcatccagcagctcagggac 2109
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>gb|U42390.1|HSU42390 Homo sapiens Trio mRNA, complete cds
          Length = 8906

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 509  gacctcatccagctgctcagggac 532
            ||||||||||||| ||||||||||
Sbjct: 2086 gacctcatccagcagctcagggac 2109
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>gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-D2 (T-Cell Receptor Alpha
             Locus), complete sequence
          Length = 132090

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gaagatatggaaggagatga 326
             ||||||||||||||||||||
Sbjct: 62004 gaagatatggaaggagatga 61985
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>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04,
             complete sequence
          Length = 140890

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tcgacaagtgcgtggtggcg 148
             ||||||||||||||||||||
Sbjct: 46721 tcgacaagtgcgtggtggcg 46702
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>dbj|AB209754.1| Homo sapiens mRNA for triple functional domain (PTPRF interacting)
            variant protein
          Length = 7455

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 509  gacctcatccagctgctcagggac 532
            ||||||||||||| ||||||||||
Sbjct: 1115 gacctcatccagcagctcagggac 1138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,838,422
Number of Sequences: 3902068
Number of extensions: 3838422
Number of successful extensions: 85650
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85180
Number of HSP's gapped (non-prelim): 465
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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