ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal5a09 |
|---|---|
| Clone Library Name | barley_pub |
>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor| Length = 910 Score = 36.2 bits (82), Expect = 0.071 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = -2 Query: 219 APGANGLRLHYHGAATLTVLDQAPHGAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIAG 40 APG L LHY L+Q P GA ++AN + LS+ + +APP + G Sbjct: 60 APGDKNLLLHYPDGREAESLEQTPAGAPSTANGQGSETEASLSN--TSAAESAPPGDVEG 117 Query: 39 P 37 P Sbjct: 118 P 118
>HEY1_CANFA (Q9TSZ2) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy| and enhancer of split related 1) (HESR-1) Length = 304 Score = 30.4 bits (67), Expect = 3.9 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Frame = -2 Query: 228 WGEAPGANGLRLHYHGAATLTVLDQAPHGAV---ASANSRYPAWRRHLSHEGEKPSSTAP 58 WG A G H+ A +L Q+ HG AS + R +H E P+ AP Sbjct: 180 WGSAFG------HHPHVAHPLLLPQSGHGNTGTSASPTDPHHQGRLAAAHP-EAPALRAP 232 Query: 57 PSAIAGPAMAFVSSAPR 7 PS GP + V+SA + Sbjct: 233 PSGGLGPVLPVVTSASK 249
>HEY1_MOUSE (Q9WV93) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy| and enhancer of split-related 1) (HESR-1) Length = 299 Score = 30.4 bits (67), Expect = 3.9 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Frame = -2 Query: 228 WGEAPGANGLRLHYHGAATLTVLDQAPHGAVASANSRYPAWRRH----LSHEGEKPSSTA 61 WG A G H+ A +L Q HG +A S P H S E P+ A Sbjct: 180 WGSAFG------HHPHIAHPLLLPQNGHGNAGTAAS--PTEPHHQGRLASAHPEAPALRA 231 Query: 60 PPSAIAGPAMAFVSSAPR 7 PPS GP + V+SA + Sbjct: 232 PPSGGLGPVLPVVTSASK 249
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/60 (33%), Positives = 25/60 (41%) Frame = -2 Query: 183 GAATLTVLDQAPHGAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIAGPAMAFVSSAPRA 4 GAA+ V AV + P H SH E S+TA PA + S+AP A Sbjct: 318 GAASAAVPIATSVAAVPTTGGSLPDSPAHESHSHESNSATASAPTTPSPAGSVTSAAPTA 377
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/74 (27%), Positives = 32/74 (43%) Frame = -2 Query: 222 EAPGANGLRLHYHGAATLTVLDQAPHGAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIA 43 +AP A + AA AP AS + P ++ + P++ AP A A Sbjct: 92 KAPAAAAPKKDAKAAAAPAPAKAAPAKKAASTPAAAPPAKKAAPAKAAAPAAAAPAPAAA 151 Query: 42 GPAMAFVSSAPRAE 1 PA+A + P+A+ Sbjct: 152 APAVAKPAPKPKAK 165
>TRUB_MOOTA (Q2RJM2) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 305 Score = 29.6 bits (65), Expect = 6.7 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = +3 Query: 87 HATDGVAMPGTGCLLMPPLRE------EPGRG-LSA*PRRGNASGGRWLLVPHPITR 236 H ++GVA+ G C +P LRE E G G L A R + G +LL PH + + Sbjct: 249 HVSNGVAIKGDVCRPLPSLREGDIVRLETGEGQLLALARVEPDTRGSFLLKPHKVLK 305
>POXB_STRPN (Q54970) Pyruvate oxidase (EC 1.2.3.3) (Pyruvic oxidase) (POX)| Length = 591 Score = 29.3 bits (64), Expect = 8.7 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 69 WRASPLHATDGVAMPG 116 WR SPL AT G+A+PG Sbjct: 407 WRTSPLFATMGIALPG 422
>UBP10_HUMAN (Q14694) Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15)| (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) (Deubiquitinating enzyme 10) Length = 798 Score = 29.3 bits (64), Expect = 8.7 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 9/98 (9%) Frame = -2 Query: 324 RDWLAWSMAASPSLYTGESPTLAVQLASIL**WGEAPGANGLRLHYHGAATL--TVLDQA 151 RD L+ + A P + T + L V IL GE NG+ LH + L T + A Sbjct: 261 RDTLSRTAGAQPCVGTDTTENLGVANGQILESSGEGTATNGVELHTTESIDLDPTKPESA 320 Query: 150 --PHGAVASANSRYP-----AWRRHLSHEGEKPSSTAP 58 P SA+ P +W L H+ KPSS++P Sbjct: 321 SPPADGTGSASGTLPVSQPKSW-ASLFHD-SKPSSSSP 356
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 195 LHYHGAATLTVLDQAPHGAVASANSRYPAWRRHLSHEG 82 L YH A + HGA+A + R+PA RRHL G Sbjct: 6873 LFYHQAG-----ESPEHGALAPGSRRHPARRRHLLKGG 6905
>EGR2_XENLA (Q08427) Early growth response protein 2 (EGR-2) (Krox-20 protein)| Length = 421 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 126 NSRYPAWRRHLSHEGEKPSS--TAPPSAIAGPAMA 28 NS AWR+H++ KP S P A+ GPA A Sbjct: 376 NSATAAWRQHVARTSLKPQSGRDRQPCALLGPAAA 410
>AMYD_THETU (P37730) Probable starch degradation products transport system| permease protein amyD Length = 292 Score = 29.3 bits (64), Expect = 8.7 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 Query: 365 FFFFHCFVHTIDSTGIGWLGAWL 297 F F F D+T IGWLG WL Sbjct: 127 FIFVDVFQTISDATHIGWLGGWL 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,734,165 Number of Sequences: 219361 Number of extensions: 1576881 Number of successful extensions: 4717 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4560 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4710 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
