ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal4l05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106655.1| Zea mays PCO098527 mRNA sequence Length = 1533 Score = 117 bits (59), Expect = 1e-23 Identities = 68/71 (95%) Strand = Plus / Plus Query: 91 ccctttcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgccta 150 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 171 ccctttcctcttctggctcaccggcggcgaccgctgctccgtcttcagcggcctcgccta 230 Query: 151 cgagatcggtc 161 ||||||||||| Sbjct: 231 cgagatcggtc 241 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 43 ggagctcttctactacttcgtccag 67 ||||||||||||||||||||||||| Sbjct: 111 ggagctcttctactacttcgtccag 135
>gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035N09, complete sequence Length = 129468 Score = 75.8 bits (38), Expect = 5e-11 Identities = 59/66 (89%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgcctacgaga 155 ||||||||||||||||||||||||||||||||||| | |||||| |||| || ||||| Sbjct: 80780 tcctcctctggctcaccggcggcgaccgctgctccgtcctcagcgccctcttcttcgaga 80721 Query: 156 tcggtc 161 |||||| Sbjct: 80720 tcggtc 80715 Score = 69.9 bits (35), Expect = 3e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||||||||||||||||||||||||||| Sbjct: 108675 tcctcctctggctcaccggcggcgaccgctgctcc 108641 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgc 127 ||||||||||||||||||||||| |||||||| Sbjct: 24890 tcctcctctggctcaccggcggccaccgctgc 24859
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 5e-11 Identities = 59/66 (89%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgcctacgaga 155 ||||||||||||||||||||||||||||||||||| | |||||| |||| || ||||| Sbjct: 13261969 tcctcctctggctcaccggcggcgaccgctgctccgtcctcagcgccctcttcttcgaga 13261910 Query: 156 tcggtc 161 |||||| Sbjct: 13261909 tcggtc 13261904 Score = 69.9 bits (35), Expect = 3e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||||||||||||||||||||||||||| Sbjct: 13289864 tcctcctctggctcaccggcggcgaccgctgctcc 13289830 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||||||||||||||||||||||| Sbjct: 13336236 tcctcctctggatcaccggcggcgaccgctgctcc 13336202 Score = 56.0 bits (28), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgcctacgaga 155 |||| |||||||||||||||||| | |||||||| ||||| |||||||| ||||||| Sbjct: 24654178 tcctgctctggctcaccggcggccccggctgctccgccttctccggcctcgtctacgagg 24654237 Query: 156 tcgg 159 |||| Sbjct: 24654238 tcgg 24654241 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgc 127 ||||||||||||||||||||||| |||||||| Sbjct: 13206079 tcctcctctggctcaccggcggccaccgctgc 13206048 Score = 46.1 bits (23), Expect = 0.043 Identities = 23/23 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggacca 36 ||||||||||||||||||||||| Sbjct: 24654084 accgggtacgtggaggtggacca 24654106 Score = 46.1 bits (23), Expect = 0.043 Identities = 32/35 (91%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||| ||||||| ||||||||||| Sbjct: 13400306 tcctcctctggatcaacggcggcaaccgctgctcc 13400272
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 5e-11 Identities = 59/66 (89%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgcctacgaga 155 ||||||||||||||||||||||||||||||||||| | |||||| |||| || ||||| Sbjct: 13342148 tcctcctctggctcaccggcggcgaccgctgctccgtcctcagcgccctcttcttcgaga 13342089 Query: 156 tcggtc 161 |||||| Sbjct: 13342088 tcggtc 13342083 Score = 69.9 bits (35), Expect = 3e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||||||||||||||||||||||||||| Sbjct: 13370043 tcctcctctggctcaccggcggcgaccgctgctcc 13370009 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||||||||||||||||||||||| Sbjct: 13416415 tcctcctctggatcaccggcggcgaccgctgctcc 13416381 Score = 56.0 bits (28), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgcctacgaga 155 |||| |||||||||||||||||| | |||||||| ||||| |||||||| ||||||| Sbjct: 24965848 tcctgctctggctcaccggcggccccggctgctccgccttctccggcctcgtctacgagg 24965907 Query: 156 tcgg 159 |||| Sbjct: 24965908 tcgg 24965911 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgc 127 ||||||||||||||||||||||| |||||||| Sbjct: 13286258 tcctcctctggctcaccggcggccaccgctgc 13286227 Score = 46.1 bits (23), Expect = 0.043 Identities = 23/23 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggacca 36 ||||||||||||||||||||||| Sbjct: 24965754 accgggtacgtggaggtggacca 24965776 Score = 46.1 bits (23), Expect = 0.043 Identities = 32/35 (91%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||| ||||||| ||||||||||| Sbjct: 13480485 tcctcctctggatcaacggcggcaaccgctgctcc 13480451
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 69.9 bits (35), Expect = 3e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||||||||||||||||||||||||||| Sbjct: 6217 tcctcctctggctcaccggcggcgaccgctgctcc 6183 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||||||||||||||||||||||| Sbjct: 52589 tcctcctctggatcaccggcggcgaccgctgctcc 52555 Score = 46.1 bits (23), Expect = 0.043 Identities = 32/35 (91%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||| ||||||| ||||||||||| Sbjct: 116659 tcctcctctggatcaacggcggcaaccgctgctcc 116625
>dbj|AK111439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A05, full insert sequence Length = 1523 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||||||||||||||||||||||| Sbjct: 272 tcctcctctggatcaccggcggcgaccgctgctcc 306
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 56.0 bits (28), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcctccttcagcggcctcgcctacgaga 155 |||| |||||||||||||||||| | |||||||| ||||| |||||||| ||||||| Sbjct: 131080 tcctgctctggctcaccggcggccccggctgctccgccttctccggcctcgtctacgagg 131139 Query: 156 tcgg 159 |||| Sbjct: 131140 tcgg 131143 Score = 46.1 bits (23), Expect = 0.043 Identities = 23/23 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggacca 36 ||||||||||||||||||||||| Sbjct: 130986 accgggtacgtggaggtggacca 131008
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgc 127 |||||||||||||||||||||||| ||||||| Sbjct: 24148055 tcctcctctggctcaccggcggcgcccgctgc 24148024
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgc 127 |||||||||||||||||||||||| ||||||| Sbjct: 24076261 tcctcctctggctcaccggcggcgcccgctgc 24076230
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 96 tcctcctctggctcaccggcggcgaccgctgc 127 |||||||||||||||||||||||| ||||||| Sbjct: 32746 tcctcctctggctcaccggcggcgcccgctgc 32715
>ref|NM_194480.1| Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.10), mRNA Length = 393 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 187 gagctcttctactacttcatccagtcggag 216
>gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0046L02, complete sequence Length = 142381 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 81152 gagctcttctactacttcatccagtcggag 81123 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 68066 accgggtacgtggaggtggacc 68045
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 95258 gagctcttctactacttcatccagtcggag 95229 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 82172 accgggtacgtggaggtggacc 82151
>gb|AC166065.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1136E01, complete sequence Length = 105139 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 100397 gagctcttctactacttcatccagtcggag 100368 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 87311 accgggtacgtggaggtggacc 87290
>gb|AC108883.1| Genomic sequence for (japonica cultivar-group) cultivar Nipponbare clone OJ1136E01, from chromosome 10, complete sequence Length = 113856 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 18599 gagctcttctactacttcatccagtcggag 18628 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 31685 accgggtacgtggaggtggacc 31706
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 95258 gagctcttctactacttcatccagtcggag 95229 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 82172 accgggtacgtggaggtggacc 82151
>dbj|AK104807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E08, full insert sequence Length = 1605 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 225 gagctcttctactacttcatccagtcggag 254
>dbj|AK072954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K09, full insert sequence Length = 1655 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 228 gagctcttctactacttcatccagtcggag 257
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 44 gagctcttctactacttcgtccagtcggag 73 |||||||||||||||||| ||||||||||| Sbjct: 95256 gagctcttctactacttcatccagtcggag 95227 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 82170 accgggtacgtggaggtggacc 82149
>ref|XM_467209.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1672 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 41 acggagctcttctactacttcgtccagtcggag 73 ||||||||||||||||||||||| |||||||| Sbjct: 257 acggagctcttctactacttcgtggagtcggag 289
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 41 acggagctcttctactacttcgtccagtcggag 73 ||||||||||||||||||||||| |||||||| Sbjct: 28231026 acggagctcttctactacttcgtggagtcggag 28231058
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 41 acggagctcttctactacttcgtccagtcggag 73 ||||||||||||||||||||||| |||||||| Sbjct: 22783 acggagctcttctactacttcgtggagtcggag 22815
>dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E09, full insert sequence Length = 1673 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 41 acggagctcttctactacttcgtccagtcggag 73 ||||||||||||||||||||||| |||||||| Sbjct: 257 acggagctcttctactacttcgtggagtcggag 289
>ref|XM_469617.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1669 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 37 gggcacggagctcttctactacttcgt 63 |||||| |||||||||||||||||||| Sbjct: 209 gggcactgagctcttctactacttcgt 235
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 37 gggcacggagctcttctactacttcgt 63 |||||| |||||||||||||||||||| Sbjct: 29568133 gggcactgagctcttctactacttcgt 29568159 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 29579459 ggcactgagctcttctactacttcgt 29579484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 37 gggcacggagctcttctactacttcgt 63 |||||| |||||||||||||||||||| Sbjct: 29659555 gggcactgagctcttctactacttcgt 29659581 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 29670881 ggcactgagctcttctactacttcgt 29670906
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence Length = 132782 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 37 gggcacggagctcttctactacttcgt 63 |||||| |||||||||||||||||||| Sbjct: 90763 gggcactgagctcttctactacttcgt 90789 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 102089 ggcactgagctcttctactacttcgt 102114
>dbj|AK104942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A07, full insert sequence Length = 510 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 37 gggcacggagctcttctactacttcgt 63 |||||| |||||||||||||||||||| Sbjct: 285 gggcactgagctcttctactacttcgt 311
>dbj|AK069378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012E22, full insert sequence Length = 1734 Score = 46.1 bits (23), Expect = 0.043 Identities = 32/35 (91%) Strand = Plus / Plus Query: 96 tcctcctctggctcaccggcggcgaccgctgctcc 130 ||||||||||| ||| ||||||| ||||||||||| Sbjct: 315 tcctcctctggatcaacggcggcaaccgctgctcc 349
>dbj|AK067912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128F10, full insert sequence Length = 1677 Score = 46.1 bits (23), Expect = 0.043 Identities = 26/27 (96%) Strand = Plus / Plus Query: 37 gggcacggagctcttctactacttcgt 63 |||||| |||||||||||||||||||| Sbjct: 320 gggcactgagctcttctactacttcgt 346
>ref|NM_194477.1| Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.7), mRNA Length = 1299 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 178 accgggtacgtggaggtggacc 199
>ref|XM_469620.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1292 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 325 ggcactgagctcttctactacttcgt 350
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 48 tcttctactacttcgtccagtcggag 73 |||||||||||||| ||||||||||| Sbjct: 138276 tcttctactacttcatccagtcggag 138301
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 18691925 ggcactgagctcttctactacttcgt 18691950
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 17676 ggcactgagctcttctactacttcgt 17701
>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04 Length = 153894 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 144028 ggcactgagctcttctactacttcgt 144053
>dbj|AK106667.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H08, full insert sequence Length = 1837 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggacc 35 |||||||||||||||||||||| Sbjct: 234 accgggtacgtggaggtggacc 255
>dbj|AK066640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A13, full insert sequence Length = 2970 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 260 ggcactgagctcttctactacttcgt 285
>dbj|AK066477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070H07, full insert sequence Length = 1931 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 ggcacggagctcttctactacttcgt 63 ||||| |||||||||||||||||||| Sbjct: 343 ggcactgagctcttctactacttcgt 368
>gb|BT016581.1| Zea mays clone Contig414 mRNA sequence Length = 1736 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 accgggtacgtggaggtggac 34 ||||||||||||||||||||| Sbjct: 160 accgggtacgtggaggtggac 180
>ref|XM_476061.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1320 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 109 caccggcggcgaccgctgctcctccttc 136 ||||||||||| |||||||||| ||||| Sbjct: 762 caccggcggcgcccgctgctccgccttc 789
>ref|XM_472333.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ggagctcttctactacttcg 62 |||||||||||||||||||| Sbjct: 189 ggagctcttctactacttcg 208
>ref|XM_869541.1| PREDICTED: Bos taurus similar to Folate transporter 1 (Solute carrier family 19 member 1) (Placental folate transporter) (FOLT) (Reduced folate carrier protein) (RFC) (Intestinal folate carrier) (IFC-1) (LOC617307), partial mRNA Length = 1339 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gaccagggcacggagctctt 51 |||||||||||||||||||| Sbjct: 1243 gaccagggcacggagctctt 1224
>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence Length = 178077 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 ggaggtggaccagggcacggagct 48 ||||||||||||||||| |||||| Sbjct: 113844 ggaggtggaccagggcatggagct 113867
>gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, complete sequence Length = 177868 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 ggaggtggaccagggcacggagct 48 ||||||||||||||||| |||||| Sbjct: 10629 ggaggtggaccagggcatggagct 10606
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gggaccctttcctcctctgg 106 |||||||||||||||||||| Sbjct: 81045 gggaccctttcctcctctgg 81026
>gb|AC154110.3| Ornithorhynchus anatinus BAC clone OABb-462P24 from chromosome unknown, complete sequence Length = 169179 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ggagctcttctactacttcg 62 |||||||||||||||||||| Sbjct: 7036 ggagctcttctactacttcg 7017
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 109 caccggcggcgaccgctgctcctccttc 136 ||||||||||| |||||||||| ||||| Sbjct: 46393 caccggcggcgcccgctgctccgccttc 46366
>gb|AF519546.1| Danio rerio coagulation factor VII, coagulation factor VIIi, and coagulation factor X genes, complete cds Length = 20947 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 tggaggtggaccagggcacggagc 47 ||||||||||| |||||||||||| Sbjct: 4961 tggaggtggacgagggcacggagc 4984
>ref|NM_131819.2| Danio rerio coagulation factor VII (f7), mRNA Length = 1828 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 tggaggtggaccagggcacggagc 47 ||||||||||| |||||||||||| Sbjct: 780 tggaggtggacgagggcacggagc 803
>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence Length = 189253 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gtctctctttccattcaacc 178 |||||||||||||||||||| Sbjct: 44256 gtctctctttccattcaacc 44275
>gb|AY040345.1| Danio rerio coagulation factor VII mRNA, complete cds Length = 1671 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 tggaggtggaccagggcacggagc 47 ||||||||||| |||||||||||| Sbjct: 764 tggaggtggacgagggcacggagc 787
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ggagctcttctactacttcg 62 |||||||||||||||||||| Sbjct: 19600698 ggagctcttctactacttcg 19600717
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 109 caccggcggcgaccgctgctcctccttc 136 ||||||||||| |||||||||| ||||| Sbjct: 4678388 caccggcggcgcccgctgctccgccttc 4678361
>gb|BC095023.1| Danio rerio coagulation factor VII, mRNA (cDNA clone MGC:109870 IMAGE:7292904), complete cds Length = 1828 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 tggaggtggaccagggcacggagc 47 ||||||||||| |||||||||||| Sbjct: 780 tggaggtggacgagggcacggagc 803
>emb|AL662997.3|OSJN00205 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039F02, complete sequence Length = 122499 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ggagctcttctactacttcg 62 |||||||||||||||||||| Sbjct: 121343 ggagctcttctactacttcg 121362
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ggcgagggggaccctttcct 99 |||||||||||||||||||| Sbjct: 1042702 ggcgagggggaccctttcct 1042683
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ggctcaccggcggcgaccgc 124 |||||||||||||||||||| Sbjct: 632616 ggctcaccggcggcgaccgc 632597
>dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147B02, full insert sequence Length = 1897 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 109 caccggcggcgaccgctgctcctccttc 136 ||||||||||| |||||||||| ||||| Sbjct: 849 caccggcggcgcccgctgctccgccttc 876
>dbj|AK070195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043E04, full insert sequence Length = 1761 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ggagctcttctactacttcg 62 |||||||||||||||||||| Sbjct: 245 ggagctcttctactacttcg 264
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete sequence Length = 258789 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 ggaggtggaccagggcacggagct 48 ||||||||||||||||| |||||| Sbjct: 196386 ggaggtggaccagggcatggagct 196363
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ggagctcttctactacttcg 62 |||||||||||||||||||| Sbjct: 51424 ggagctcttctactacttcg 51443
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ggcgagggggaccctttcct 99 |||||||||||||||||||| Sbjct: 715679 ggcgagggggaccctttcct 715660 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,667,650 Number of Sequences: 3902068 Number of extensions: 1667650 Number of successful extensions: 138544 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137034 Number of HSP's gapped (non-prelim): 1510 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
