>OTX1_RAT (Q63410) Homeobox protein OTX1|
          Length = 355

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = +2

Query: 50  VHSAHHETSRSLEIRSSMAMQHTRDPTAKLXXXXXXXXXXXXXYHHHHYG 199
           +HS HH    S    SSMA  H   P A               +HHHH G
Sbjct: 255 MHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHHHHQG 304

>OTX1_MOUSE (P80205) Homeobox protein OTX1|
          Length = 355

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = +2

Query: 50  VHSAHHETSRSLEIRSSMAMQHTRDPTAKLXXXXXXXXXXXXXYHHHHYG 199
           +HS HH    S    SSMA  H   P A               +HHHH G
Sbjct: 255 MHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHHHHQG 304

>RUVA_MYCHJ (Q4A9R7) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 221

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 574 RMHSFSRKERAHSYAIEHERDYRKNTSNCAGNQSRLL 464
           R+  FSR E    Y  EHE DY K T   A  + R+L
Sbjct: 32  RIDRFSRDENRKIYIYEHENDYTKITYGFASFRERIL 68

>RUVA_MYCH7 (Q4A7W5) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 221

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 574 RMHSFSRKERAHSYAIEHERDYRKNTSNCAGNQSRLL 464
           R+  FSR E    Y  EHE DY K T   A  + R+L
Sbjct: 32  RIDRFSRDENRKIYIYEHENDYTKITYGFASFRERIL 68

>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)|
            (AH antigen)
          Length = 3210

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
 Frame = -1

Query: 571  MHSFSRKERAHSYAIEHERDYRKNTSNCAGNQSRLLPVIQSNKE*KKSTNIPGN------ 410
            MH  ++K    +  ++ E    KN    AG    LL  I+S+K+  K   +  +      
Sbjct: 2721 MHEMAQK----TAELQEELSGEKN--RLAGELQLLLEEIKSSKDQLKELTLENSELKKSL 2774

Query: 409  -CSQEEP**EQSPADPDAAEWQPRLPDWEALHQDLLLDSARE 287
             C  ++   ++     + AE+Q RL + E  HQ LLLD+ ++
Sbjct: 2775 DCMHKDQVEKEGKVREEIAEYQLRLHEAEKKHQALLLDTNKQ 2816

>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)|
          Length = 2829

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = -2

Query: 570  CIHSQEKKGRILMPLSMKGTTAKIPATVQAINPGFSR*SKAT-KNRRKAPIY---QGIAA 403
            CIHS   KG+   P  +K    +I  T  A + G SR  + T KN+  +P+    Q I  
Sbjct: 1727 CIHSAMPKGKSHKPYRVKKIMDQINHTSAATSSGNSRSMQETDKNKPTSPVKPMPQSIGF 1786

Query: 402  KKNPSKN-KAQPTPTPQNGSRGSRTGRPSTK 313
            K+   KN + +  P  +N     R  +PS+K
Sbjct: 1787 KERLKKNTELKLNPNSENQYCDPR--KPSSK 1815

>SL9A4_RAT (P26434) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)|
           (NHE-4) (Solute carrier family 9 member 4)
          Length = 717

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 372 PTPTPQNGSRGSRTGRPSTKTCCWIVH 292
           P   PQ   RG+R    +   CCW++H
Sbjct: 662 PYSNPQPARRGARAAESTGNPCCWLLH 688

>PALH_EMENI (Q9P904) pH-response regulator protein palH/RIM21|
          Length = 760

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -2

Query: 462 R*SKATKNRRKAPIYQGIAAKKNPSKNKAQPTPTPQNGSRGSRTGRPSTKTCCWIVH--- 292
           R  + T+ +R+A   +G  A K+  +  A+PTP P   +  SR    S  +  + VH   
Sbjct: 423 RGGRITQTQREA---EGATAAKSRKRRSARPTPPPAAVTPVSRADTTSAASTVYNVHYYP 479

Query: 291 GKATTP*ALRPFRE 250
             + TP    PF E
Sbjct: 480 VSSPTPPVAMPFME 493

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 453  KATKNRRKAPIYQGIAAKK-NPSKNKAQP-TPTPQNGSRGSRTGRPSTKT 310
            +  K+ R  P     AA + +PS + AQP TP P + +  SRT R S KT
Sbjct: 1108 RTRKSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1157

>PROM1_HUMAN (O43490) Prominin-1 precursor (Prominin-like protein 1) (Antigen|
           AC133) (CD133 antigen)
          Length = 865

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
 Frame = +1

Query: 394 VLLGCNSLVYWCFSSILCCFGS-------PGEAWIDCLHSCWYFCGSPFHAQWHKNAPFL 552
           V+LG   +VY+    ILCC          P   +  C+  C   CG   H +  +N PFL
Sbjct: 96  VILGLK-IVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFL 154

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 444  KNRRKAPIYQGIAAKK-NPSKNKAQP-TPTPQNGSRGSRTGRPSTKT 310
            K+ R  P     AA + +PS + AQP TP P + +  SRT R S KT
Sbjct: 1113 KSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1159

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 408  AAKKNPSKNKAQP-TPTPQNGSRGSRTGRPSTKT 310
            A + +PS + AQP TP P + +  SRT R S KT
Sbjct: 1124 APEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1157

>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)|
           (Microtubule-associated protein-U) (MAP-U)
          Length = 1072

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -2

Query: 498 PATVQAINPGFSR*SKATKNRRKAPIYQGIAAKKNPSKNKAQPTPTPQNGSRGSRTGRPS 319
           PA+  A+ PG    SK+T+   KAP    +A+  + S+N +  TP P+  +     G+P+
Sbjct: 738 PASAPAVKPG----SKSTQAVPKAPATATLASPGSTSRNLS--TPLPKRPTAIKTEGKPA 791

>H1_PARAN (P02256) Histone H1, gonadal|
          Length = 248

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 453 KATKNRRKAPIYQGIAAKKNPSKNKAQPTPTPQNGSRGSRTGRPSTK 313
           KA K  +K+P      AKK+P K KA+ +P     + G R  +P+ K
Sbjct: 184 KAKKPAKKSPKKAKKPAKKSPKKKKAKRSPKKAKKAAGKR--KPAAK 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,642,890
Number of Sequences: 219361
Number of extensions: 1565140
Number of successful extensions: 6082
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6075
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)