ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal4j22 |
|---|---|
| Clone Library Name | barley_pub |
>CAND2_MOUSE (Q6ZQ73) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) Length = 1235 Score = 52.0 bits (123), Expect = 1e-06 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 5/173 (2%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTIMVDRRS 181 LR ATL L++L + G + + T+LTEL L+S+ D+H+A LA++ T+ + S Sbjct: 667 LRLATLAALDALAQSQGLGLPPPAVRTVLTELPALVSENDMHVAQLAVDFLTTVTQTQPS 726 Query: 182 VKNVGLAVIHKXLPEALTLIRSXXXXXXXXXXXXXXXXXXXXSANISFE-TLLNSLISTA 358 + V L E L L+ S + E + L SL++ Sbjct: 727 SL---VEVSGPVLGELLQLLHSPLLPAGVLAATEGFLQALVGTRPPCVEYSELISLLTAP 783 Query: 359 KPSQSG----GLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSST 505 +Q G GL KQ S+A+CVA L A + + ++ + SST Sbjct: 784 VYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDAKSPHSST 836
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 50.4 bits (119), Expect = 3e-06 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 3/170 (1%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDRR 178 L+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 666 LKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 725 Query: 179 SVKNVGLAVIHKXLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLIS 352 S+ + ++++ E + L+RS + N+ + LL L Sbjct: 726 SLSKISGSILN----ELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 781 Query: 353 TAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSS 502 + KQ+ +SIA+CVA L A + A + ++ + N S+ Sbjct: 782 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRST 831
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 50.4 bits (119), Expect = 3e-06 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 3/170 (1%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDRR 178 L+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 666 LKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 725 Query: 179 SVKNVGLAVIHKXLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLIS 352 S+ + ++++ E + L+RS + N+ + LL L Sbjct: 726 SLSKISGSILN----ELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 781 Query: 353 TAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSS 502 + KQ+ +SIA+CVA L A + A + ++ + N S+ Sbjct: 782 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRST 831
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 50.4 bits (119), Expect = 3e-06 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 3/170 (1%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDRR 178 L+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 666 LKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 725 Query: 179 SVKNVGLAVIHKXLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLIS 352 S+ + ++++ E + L+RS + N+ + LL L Sbjct: 726 SLSKISGSILN----ELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 781 Query: 353 TAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSS 502 + KQ+ +SIA+CVA L A + A + ++ + N S+ Sbjct: 782 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRST 831
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 50.4 bits (119), Expect = 3e-06 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 3/170 (1%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDRR 178 L+ TL L+ L+ Y + ++ + +L EL LIS+ D+H++ +A+ T+ V Sbjct: 666 LKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 725 Query: 179 SVKNVGLAVIHKXLPEALTLIRS--XXXXXXXXXXXXXXXXXXXXSANISFETLLNSLIS 352 S+ + ++++ E + L+RS + N+ + LL L Sbjct: 726 SLSKISGSILN----ELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 781 Query: 353 TAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSS 502 + KQ+ +SIA+CVA L A + A + ++ + N S+ Sbjct: 782 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRST 831
>CAND2_HUMAN (O75155) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) Length = 1119 Score = 50.1 bits (118), Expect = 4e-06 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTI-MVDRR 178 LR ATL L++L + G + S+ + +L EL L+++ D+H+A LA++ T+ Sbjct: 575 LRLATLAALDALAQSQGLSLPPSAVQAVLAELPALVNESDMHVAQLAVDFLATVTQAQPA 634 Query: 179 SVKNVGLAVIHKXLPEALTLIRSXXXXXXXXXXXXXXXXXXXXSANISFE-----TLLNS 343 S+ V V L E L L+RS + + +LL + Sbjct: 635 SLVEVSGPV----LSELLRLLRSPLLPAGVLAAAEGFLQALVGTRPPCVDYAKLISLLTA 690 Query: 344 LISTAKPSQSGGLSKQALFSIAQCVAVLCLAAGDKKCASTIEML 475 + GL KQ S+A+CVA L AA ++ AST L Sbjct: 691 PVYEQAVDGGPGLHKQVFHSLARCVAALS-AACPQEAASTASRL 733
>CAND2_RAT (Q9R0L4) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) (TBP-interacting protein b) Length = 1273 Score = 47.8 bits (112), Expect = 2e-05 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 5/173 (2%) Frame = +2 Query: 2 LRQATLGTLNSLVVTYGSQIGSSSYETILTELSTLISDVDLHMAALALELCCTIMVDRRS 181 LR ATL L++L + G + + ++L EL L+S+ D+H+A LA++ T+ + + Sbjct: 705 LRLATLAALDALAQSQGLGLPPPAVRSVLAELPALVSENDMHVAQLAVDFLTTVTQTQPA 764 Query: 182 VKNVGLAVIHKXLPEALTLIRSXXXXXXXXXXXXXXXXXXXXSANISFE-TLLNSLISTA 358 + V L E L L+ S + E + L SL++ Sbjct: 765 SL---VEVSGPVLEELLQLLHSPLLPAGVLAATEGFLQALVGTRPPCVEYSELISLLTAP 821 Query: 359 KPSQSG----GLSKQALFSIAQCVAVLCLAAGDKKCASTIEMLKGILNDDSST 505 +Q G GL KQ S+A+CVA L A + + ++ + SST Sbjct: 822 VYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDARSPHSST 874
>DEGZ_CAEEL (Q10025) Degenerin-like protein T28D9.7 in chromosome II| Length = 982 Score = 32.3 bits (72), Expect = 0.83 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 385 GKTA*L*WFGSGNKGVQQSFKAYICRLHQCS 293 GKT + +FG GNK +Q F+ I +H+C+ Sbjct: 629 GKTGAIMFFGDGNKDNRQKFEKLIVEMHECA 659
>EPHB3_MOUSE (P54754) Ephrin type-B receptor 3 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-5) (Developmental kinase 5) (SEK-4) Length = 993 Score = 30.4 bits (67), Expect = 3.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = +2 Query: 320 SFETLLNSLISTAKPSQSGGLSKQALFSIAQ----CVAVLCLAAGDKKCAST 463 SF L ++T K G LSK + Q C++++ + AGDKKCAST Sbjct: 157 SFSRLDAGRVNT-KVRSFGPLSKAGFYLAFQDQGACMSLISVRAGDKKCAST 207
>USH2A_RAT (Q8K3K1) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 1512 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 4/24 (16%) Frame = -3 Query: 306 CTSAAKNF----WSACSACPCNRA 247 C +NF WSAC C CNRA Sbjct: 773 CDVCRENFYGLPWSACEVCDCNRA 796
>CATV_NPVOP (O10364) Viral cathepsin (EC 3.4.22.50) (V-cath) (Cysteine| proteinase) (CP) Length = 324 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 429 HSTATHCAIENSACLERPPDCDGLAVEIREFNKVSKL 319 H T C + L+RPPD L + R+FNKV+ + Sbjct: 95 HQTQNFCEV---VILDRPPDRGPLEFDWRQFNKVTSV 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,836,667 Number of Sequences: 219361 Number of extensions: 1377286 Number of successful extensions: 3009 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3003 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
