ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal4j09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 299 bits (151), Expect = 1e-78 Identities = 163/168 (97%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1007 gtatggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggta 1066 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct: 1067 tcttccagaccgacaatgtctgtgacgagtctgtcgtaaagatcgtcgacaccttcccag 1126 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 1174
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 299 bits (151), Expect = 1e-78 Identities = 163/168 (97%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 752 gtatggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggta 811 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct: 812 tcttccagaccgacaatgtctgtgacgagtctgtcgtaaagatcgtcgacaccttcccag 871 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 919
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 283 bits (143), Expect = 8e-74 Identities = 161/168 (95%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 77 gtatggagaagttctactgggctcccacccgcgacgaccgtatcggtgtctgcaagggta 136 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 137 tcttccagaccgacaatgtcagcgacgagtccgtcgtcaagatcgtcgacaccttcccag 196 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 197 gacaatccatcgactttttcggtgctctgcgtgctcgggtgtacgacg 244
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 283 bits (143), Expect = 8e-74 Identities = 161/168 (95%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 927 gtatggagaagttctactgggctcccacccgcgacgaccgtatcggtgtctgcaagggta 986 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 987 tcttccagaccgacaatgtcagcgacgagtccgtcgtcaagatcgtcgacaccttcccag 1046 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1047 gacaatccatcgactttttcggtgctctgcgtgctcgggtgtacgacg 1094
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 244 bits (123), Expect = 7e-62 Identities = 129/132 (97%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 6749 gtatggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggta 6808 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6809 tcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 6868 Query: 121 gacaatccattg 132 |||||||||||| Sbjct: 6869 gacaatccattg 6880 Score = 81.8 bits (41), Expect = 6e-13 Identities = 134/166 (80%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||||||||||||| |||||||| || |||| |||| || |||||||| ||| Sbjct: 3624 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtgtgcaagggcatc 3683 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||||| ||| |||||| | || || | | | || ||||||||||| || Sbjct: 3684 ttccgcaccgacaacgtcccggacgaggccgtggtgaggctggtggacaccttcccgggg 3743 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| ||||| ||||| || ||||| || ||||||||||||| Sbjct: 3744 cagtccatcgacttcttcggcgcgctgcgggcacgggtgtacgacg 3789 Score = 73.8 bits (37), Expect = 1e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 132 gactttttcggtgctctgcgtgctcgggtgtacgacg 168 ||||||||||||||||||||||||||||||||||||| Sbjct: 7021 gactttttcggtgctctgcgtgctcgggtgtacgacg 7057
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 238 bits (120), Expect = 4e-60 Identities = 155/168 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||||| Sbjct: 938 gtatggagaagttctactgggcgcccacccgcgaggaccgtatcggcgtctgcaagggta 997 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 998 tcttccagaccgacaacgtcagcgacgagtctgtcgtcaagatcgtcgacacnttcccag 1057 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 |||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1058 gacagtccatcgacttcttcggtgctctgcgtgctcgggtgtacgacg 1105
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 236 bits (119), Expect = 2e-59 Identities = 155/168 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||| |||||||| |||||||| || ||||| |||| ||||||||||||| Sbjct: 948 gtatggagaagttttactgggcgcccacccgcgaggaccgtatcggcgtctgcaagggta 1007 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1008 tcttccagaccgacaacgtcagcgacgagtctgtcgtcaagatcgtcgacaccttcccag 1067 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 |||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1068 gacagtccatcgacttcttcggtgctctgcgtgctcgggtgtacgacg 1115
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 900 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 959 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 960 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1019 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1020 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1067
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 895 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 954 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 955 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1014 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1015 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1062
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 149 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 208 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 209 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 268 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 269 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 316
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 943 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 1002 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 1003 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1062 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1063 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1110
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 894 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 953 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 954 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1013 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1014 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1061
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 932 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 991 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 992 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1051 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1052 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1099
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 931 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 990 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 991 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1050 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1051 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1098
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 715 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 774 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 775 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 834 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 835 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 882
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 936 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 995 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 996 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1055 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1056 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1103
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 149 bits (75), Expect = 3e-33 Identities = 144/168 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 930 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 989 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 990 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 1049 Query: 121 gacaatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 | |||||||| || || ||||| ||||| ||||| || || ||||||| Sbjct: 1050 gccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacgacg 1097
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 137 bits (69), Expect = 1e-29 Identities = 114/130 (87%) Strand = Plus / Minus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 108817 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 108758 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 108757 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 108698 Query: 121 gacaatccat 130 | |||||||| Sbjct: 108697 gccaatccat 108688 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 3 atggagaagttctactgggctcccacccg 31 ||||| ||||||||||||||||||||||| Sbjct: 112519 atggacaagttctactgggctcccacccg 112491
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 137 bits (69), Expect = 1e-29 Identities = 114/130 (87%) Strand = Plus / Minus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 30694 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 30635 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 30634 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 30575 Query: 121 gacaatccat 130 | |||||||| Sbjct: 30574 gccaatccat 30565 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 3 atggagaagttctactgggctcccacccg 31 ||||| ||||||||||||||||||||||| Sbjct: 34396 atggacaagttctactgggctcccacccg 34368
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 137 bits (69), Expect = 1e-29 Identities = 114/130 (87%) Strand = Plus / Minus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 28303956 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 28303897 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 28303896 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 28303837 Query: 121 gacaatccat 130 | |||||||| Sbjct: 28303836 gccaatccat 28303827 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 3 atggagaagttctactgggctcccacccg 31 ||||| ||||||||||||||||||||||| Sbjct: 28307658 atggacaagttctactgggctcccacccg 28307630
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 137 bits (69), Expect = 1e-29 Identities = 114/130 (87%) Strand = Plus / Minus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| Sbjct: 28286405 gtatggagaagttctactgggctcccacccgcgacgaccgtgtcggcgtctgcaagggta 28286346 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 |||||| |||||||| ||| |||||| |||||||||||||||||| |||||||| Sbjct: 28286345 tcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgacagcttcccag 28286286 Query: 121 gacaatccat 130 | |||||||| Sbjct: 28286285 gccaatccat 28286276 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 3 atggagaagttctactgggctcccacccg 31 ||||| ||||||||||||||||||||||| Sbjct: 28290107 atggacaagttctactgggctcccacccg 28290079
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 1070 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1129 Query: 61 tcttc 65 ||||| Sbjct: 1130 tcttc 1134
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 1070 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1129 Query: 61 tcttc 65 ||||| Sbjct: 1130 tcttc 1134
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 1099 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1158 Query: 61 tcttc 65 ||||| Sbjct: 1159 tcttc 1163
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 981 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1040 Query: 61 tcttc 65 ||||| Sbjct: 1041 tcttc 1045
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 896 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 955 Query: 61 tcttc 65 ||||| Sbjct: 956 tcttc 960
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Minus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 14218 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 14159 Query: 61 tcttc 65 ||||| Sbjct: 14158 tcttc 14154
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 984 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1043 Query: 61 tcttc 65 ||||| Sbjct: 1044 tcttc 1048
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 973 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1032 Query: 61 tcttc 65 ||||| Sbjct: 1033 tcttc 1037
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 981 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1040 Query: 61 tcttc 65 ||||| Sbjct: 1041 tcttc 1045
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 984 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1043 Query: 61 tcttc 65 ||||| Sbjct: 1044 tcttc 1048
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 1099 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 1158 Query: 61 tcttc 65 ||||| Sbjct: 1159 tcttc 1163
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 93.7 bits (47), Expect = 2e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 3065 gtatggagaagttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggta 3124 Query: 61 tcttc 65 ||||| Sbjct: 3125 tcttc 3129
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 87.7 bits (44), Expect = 1e-14 Identities = 119/145 (82%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||||||||||||||||||||||||||| ||||| ||||||| || |||| Sbjct: 1020 gtatggagaagttctactgggctcccacccgtgaggaccgtatcggtgttgccaccggta 1079 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||| ||||||||||| ||| || || |||||| |||||||||||||||| | Sbjct: 1080 tcttcaggaccgacaatgttcctgaggaccacgttgtcaagctcgtcgacaccttccctg 1139 Query: 121 gacaatccattgactttttcggtgc 145 | ||||| ||||| || |||||||| Sbjct: 1140 gccaatctattgatttcttcggtgc 1164
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 87.7 bits (44), Expect = 1e-14 Identities = 119/145 (82%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||| | || |||| |||| ||||||| |||| Sbjct: 890 gtatggagaagttctactgggctcccaccagggatgaccgggtcggcgtctgcaccggta 949 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||| ||||||| ||| | ||| |||| ||||| |||||||||||||||| | Sbjct: 950 tcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtcgacaccttccccg 1009 Query: 121 gacaatccattgactttttcggtgc 145 | |||||||||||||| |||||||| Sbjct: 1010 gccaatccattgacttcttcggtgc 1034
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 87.7 bits (44), Expect = 1e-14 Identities = 119/145 (82%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||| | || |||| |||| ||||||| |||| Sbjct: 753 gtatggagaagttctactgggctcccaccagggatgaccgggtcggcgtctgcaccggta 812 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||| ||||||| ||| | ||| |||| ||||| |||||||||||||||| | Sbjct: 813 tcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtcgacaccttccccg 872 Query: 121 gacaatccattgactttttcggtgc 145 | |||||||||||||| |||||||| Sbjct: 873 gccaatccattgacttcttcggtgc 897
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 87.7 bits (44), Expect = 1e-14 Identities = 119/145 (82%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||| | || |||| |||| ||||||| |||| Sbjct: 589 gtatggagaagttctactgggctcccaccagggatgaccgggtcggcgtctgcaccggta 648 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||| ||||||| ||| | ||| |||| ||||| |||||||||||||||| | Sbjct: 649 tcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtcgacaccttccccg 708 Query: 121 gacaatccattgactttttcggtgc 145 | |||||||||||||| |||||||| Sbjct: 709 gccaatccattgacttcttcggtgc 733
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 87.7 bits (44), Expect = 1e-14 Identities = 119/145 (82%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||||||||||||||||||||||||| | || |||| |||| ||||||| |||| Sbjct: 783 gtatggagaagttctactgggctcccaccagggatgaccgggtcggcgtctgcaccggta 842 Query: 61 tcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccag 120 ||||| ||||||| ||| | ||| |||| ||||| |||||||||||||||| | Sbjct: 843 tcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtcgacaccttccccg 902 Query: 121 gacaatccattgactttttcggtgc 145 | |||||||||||||| |||||||| Sbjct: 903 gccaatccattgacttcttcggtgc 927
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 81.8 bits (41), Expect = 6e-13 Identities = 134/166 (80%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||||||||||||| |||||||| || |||| |||| ||||||||||| ||| Sbjct: 511 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtctgcaagggcatc 570 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||| ||| || ||| |||||| || | |||||||||||||| || Sbjct: 571 ttccgcaccgacggcgtcgacgaggagcacgtcgtccagctggtcgacaccttccctggc 630 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| ||||| ||||| || |||||||| ||||| ||||||| Sbjct: 631 cagtccatcgacttcttcggcgcgctgcgtgcccgggtctacgacg 676
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 81.8 bits (41), Expect = 6e-13 Identities = 134/166 (80%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||||||||||||| |||||||| || |||| |||| || |||||||| ||| Sbjct: 905 atggagaagttctactgggcgcccacccgggaggaccgcatcggcgtgtgcaagggcatc 964 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||||| ||| |||||| | || || | | | || ||||||||||| || Sbjct: 965 ttccgcaccgacaacgtccccgacgaggccgtggtgaggctggtggacaccttcccgggg 1024 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| ||||| ||||| || ||||| || ||||||||||||| Sbjct: 1025 cagtccatcgacttcttcggcgcgctgcgggcgcgggtgtacgacg 1070
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 6e-13 Identities = 134/166 (80%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||||||||||||| |||||||| || |||| |||| || |||||||| ||| Sbjct: 1055 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtgtgcaagggcatc 1114 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||||| ||| |||||| | || || | | | || ||||||||||| || Sbjct: 1115 ttccgcaccgacaacgtcccggacgaggccgtggtgaggctggtggacaccttcccgggg 1174 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| ||||| ||||| || ||||| || ||||||||||||| Sbjct: 1175 cagtccatcgacttcttcggcgcgctgcgggcacgggtgtacgacg 1220
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 75.8 bits (38), Expect = 4e-11 Identities = 48/52 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctg 52 |||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct: 2762 gtatggagaagttctactgggctcccacccgtgaggaccgtattggtgtctg 2813
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 75.8 bits (38), Expect = 4e-11 Identities = 48/52 (92%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctg 52 |||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct: 1134 gtatggagaagttctactgggctcccacccgtgaggaccgtattggtgtctg 1185 Score = 40.1 bits (20), Expect = 2.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 103 tcgtcgacaccttcccaggacaatccattgactttttcgg 142 |||| ||| ||||||| |||||||| || ||||||||||| Sbjct: 1236 tcgttgacgccttccctggacaatctatcgactttttcgg 1275
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 73.8 bits (37), Expect = 1e-10 Identities = 133/166 (80%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 452 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 511 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||| ||| |||||| |||||| || |||||||| ||||||| || Sbjct: 512 ttccgcaccgacggcgtccccgacgagcacgtcgtccagctcgtcgacgccttcccgggc 571 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| ||||| ||||| || || || || ||||||||||||| Sbjct: 572 cagtccatcgacttcttcggcgccctccgcgcccgggtgtacgacg 617
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 73.8 bits (37), Expect = 1e-10 Identities = 133/166 (80%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||||||||||||| |||||||| || |||| |||| ||||||||||| ||| Sbjct: 906 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtctgcaagggcatc 965 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||| ||| || ||| |||||| || | |||||||||||||| || Sbjct: 966 ttccgcaccgacggcgtcgacgaggagcacgtcgtccagctggtcgacaccttccctggc 1025 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| || || ||||| || |||||||| ||||| ||||||| Sbjct: 1026 cagtccatcgatttcttcggcgcgctgcgtgcccgggtctacgacg 1071
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 73.8 bits (37), Expect = 1e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 132 gactttttcggtgctctgcgtgctcgggtgtacgacg 168 ||||||||||||||||||||||||||||||||||||| Sbjct: 2 gactttttcggtgctctgcgtgctcgggtgtacgacg 38
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 69.9 bits (35), Expect = 2e-09 Identities = 62/72 (86%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||||||||||||| |||||||| || |||| |||| ||||||||||| ||| Sbjct: 906 atggagaagttctactgggcgcccacccgcgaggaccgcatcggcgtctgcaagggcatc 965 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 966 ttccgcaccgac 977
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 9e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 108 gacaccttcccaggacaatccattgactttttcggtgctctg 149 ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1072 gacaccttcccgggccaatccattgactttttcggtgctctg 1113 Score = 42.1 bits (21), Expect = 0.52 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacc 29 ||||||||||||| |||||||| |||||| Sbjct: 965 gtatggagaagttttactgggcacccacc 993
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 65.9 bits (33), Expect = 4e-08 Identities = 132/166 (79%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| || |||| |||| || |||||||| ||| Sbjct: 460 atggacaagttctactgggcgcccacccgggaggaccgcatcggcgtgtgcaagggcatc 519 Query: 63 ttccanaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 122 |||| |||||| ||| |||||| |||||| || |||||||| ||||||| || Sbjct: 520 ttccgcaccgacggcgtccccgacgagcacgtcgtccagctcgtcgacgccttcccgggc 579 Query: 123 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacg 168 || ||||| ||||| ||||| || || || || ||||||||||||| Sbjct: 580 cagtccatcgacttcttcggcgccctccgcgcccgggtgtacgacg 625
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 470 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 529 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 530 ttccgcaccgac 541
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 466 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 525 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 526 ttccgcaccgac 537
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 472 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 531 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 532 ttccgcaccgac 543
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 470 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 529 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 530 ttccgcaccgac 541
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 468 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 527 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 528 ttccgcaccgac 539
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 61.9 bits (31), Expect = 6e-07 Identities = 61/72 (84%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 472 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 531 Query: 63 ttccanaccgac 74 |||| |||||| Sbjct: 532 ttccgcaccgac 543
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 61.9 bits (31), Expect = 6e-07 Identities = 31/31 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccg 31 ||||||||||||||||||||||||||||||| Sbjct: 981 gtatggagaagttctactgggctcccacccg 1011
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 60.0 bits (30), Expect = 2e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 96 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 149 |||||||||||||| | |||||| |||||||| ||||| || |||||||||||| Sbjct: 1073 gtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctg 1126
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 60.0 bits (30), Expect = 2e-06 Identities = 55/64 (85%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 466 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 525 Query: 63 ttcc 66 |||| Sbjct: 526 ttcc 529
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 60.0 bits (30), Expect = 2e-06 Identities = 55/64 (85%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 ||||| |||||||||||||| |||||||| ||| |||| |||| || |||||||| ||| Sbjct: 466 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 525 Query: 63 ttcc 66 |||| Sbjct: 526 ttcc 529
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 58.0 bits (29), Expect = 9e-06 Identities = 53/61 (86%) Strand = Plus / Plus Query: 108 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 167 ||||||||||| || || ||||||||||| ||||| || |||||||| || ||||||||| Sbjct: 2662 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 2721 Query: 168 g 168 | Sbjct: 2722 g 2722
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 58.0 bits (29), Expect = 9e-06 Identities = 53/61 (86%) Strand = Plus / Plus Query: 108 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 167 ||||||||||| || || ||||||||||| ||||| || |||||||| || ||||||||| Sbjct: 972 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 1031 Query: 168 g 168 | Sbjct: 1032 g 1032
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 54.0 bits (27), Expect = 1e-04 Identities = 52/61 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 ||||||| || |||||||||||||| ||| | || ||||| | |||||||||||||||| Sbjct: 965 gtatggaaaaattctactgggctcctaccagggaagaccgtattggtgtctgcaagggta 1024 Query: 61 t 61 | Sbjct: 1025 t 1025
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 54.0 bits (27), Expect = 1e-04 Identities = 55/65 (84%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| |||| Sbjct: 169 gtatggagaaattctactgggcacccactcgtgaggaccgtattggtgtttgcactggta 228 Query: 61 tcttc 65 ||||| Sbjct: 229 tcttc 233
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 52.0 bits (26), Expect = 5e-04 Identities = 85/105 (80%) Strand = Plus / Plus Query: 45 ggtgtctgcaagggtatcttccanaccgacaatgtcagtgacgagtctgtcgtcaagatc 104 ||||| ||||||||||| ||| |||||||| || ||| || |||| || ||||| Sbjct: 331 ggtgtttgcaagggtattttcaggaccgacaacgtgcctgaggaagctgttgtaaagatt 390 Query: 105 gtcgacaccttcccaggacaatccattgactttttcggtgctctg 149 ||||| |||||||| |||||||| |||||||| || ||||||||| Sbjct: 391 gtcgataccttccctggacaatctattgacttctttggtgctctg 435
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 50.1 bits (25), Expect = 0.002 Identities = 47/55 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaa 55 |||||||||| ||||||||||| |||||| | || ||||| | ||||||||||| Sbjct: 965 gtatggagaaattctactgggcacccaccagggaggaccgtattggtgtctgcaa 1019
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcc 25 ||||||||||||||||||||||||| Sbjct: 403 gtatggagaagttctactgggctcc 427 Score = 44.1 bits (22), Expect = 0.13 Identities = 43/50 (86%) Strand = Plus / Plus Query: 96 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 145 |||||||| || ||||||||||| || |||||||| || || |||||||| Sbjct: 498 gtcaagattgttgacaccttccctggccaatccatcgatttcttcggtgc 547
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 48.1 bits (24), Expect = 0.008 Identities = 54/64 (84%) Strand = Plus / Plus Query: 103 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 162 |||||||||||||||| || |||||||| || || |||||||| || | |||||||| | Sbjct: 881 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 940 Query: 163 acga 166 |||| Sbjct: 941 acga 944
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 48.1 bits (24), Expect = 0.008 Identities = 46/54 (85%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgca 54 |||||||||| ||||||||||| || ||||| ||| | ||| | |||||||||| Sbjct: 90 gtatggagaaattctactgggcaccaacccgcgacgatcgtattggtgtctgca 143
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 48.1 bits (24), Expect = 0.008 Identities = 54/64 (84%) Strand = Plus / Plus Query: 103 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 162 |||||||||||||||| || |||||||| || || |||||||| || | |||||||| | Sbjct: 882 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 941 Query: 163 acga 166 |||| Sbjct: 942 acga 945
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 46.1 bits (23), Expect = 0.033 Identities = 54/65 (83%) Strand = Plus / Plus Query: 3 atggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggtatc 62 |||||||||| ||||||| ||||||||||| |||| |||| ||||||| ||| ||| Sbjct: 1796 atggagaagtactactggaaccccacccgtgaggaccgcatcggcgtctgcatgggaatc 1855 Query: 63 ttcca 67 ||||| Sbjct: 1856 ttcca 1860
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 46.1 bits (23), Expect = 0.033 Identities = 54/65 (83%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||| ||||||||||| |||||| | || |||| | |||||||||| |||| Sbjct: 808 gtatggagaaattctactgggcgcccaccagagaagaccgaattggtgtctgcactggta 867 Query: 61 tcttc 65 ||||| Sbjct: 868 tcttc 872
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 46.1 bits (23), Expect = 0.033 Identities = 54/65 (83%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcccacccgtgacnaccgtntcggtgtctgcaagggta 60 |||||||||| ||||||||||| |||||| | || |||| | |||||||||| |||| Sbjct: 981 gtatggagaaattctactgggcgcccaccagagaagaccgaattggtgtctgcactggta 1040 Query: 61 tcttc 65 ||||| Sbjct: 1041 tcttc 1045
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 44.1 bits (22), Expect = 0.13 Identities = 43/50 (86%) Strand = Plus / Plus Query: 96 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 145 |||||||| || || | |||||| |||||||| || |||||||||||||| Sbjct: 296 gtcaagattgttgataacttccctggacaatctatcgactttttcggtgc 345 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggc 22 |||||||||||||||||||||| Sbjct: 201 gtatggagaagttctactgggc 222
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggc 22 |||||||||||||||||||||| Sbjct: 974 gtatggagaagttctactgggc 995
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 44.1 bits (22), Expect = 0.13 Identities = 37/42 (88%) Strand = Plus / Plus Query: 105 gtcgacaccttcccaggacaatccattgactttttcggtgct 146 |||||||||||||||||||| || || ||||| || |||||| Sbjct: 1080 gtcgacaccttcccaggacagtcaatagacttctttggtgct 1121
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggc 22 |||||||||||||||||||||| Sbjct: 942 gtatggagaagttctactgggc 963
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggc 22 |||||||||||||||||||||| Sbjct: 970 gtatggagaagttctactgggc 991
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggc 22 |||||||||||||||||||||| Sbjct: 961 gtatggagaagttctactgggc 982
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 caagatcgtcgacaccttccc 118 ||||||||||||||||||||| Sbjct: 3673 caagatcgtcgacaccttccc 3653
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgggctcc 25 ||||||| ||||||||||||||||| Sbjct: 395 gtatggaaaagttctactgggctcc 419
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 agtgacgagtctgtcgtcaa 100 |||||||||||||||||||| Sbjct: 308 agtgacgagtctgtcgtcaa 289
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gtatggagaagttctactgg 20 |||||||||||||||||||| Sbjct: 659 gtatggagaagttctactgg 678
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 ggtgtctgcaagggtatcttcca 67 |||||||||||||||||| |||| Sbjct: 67265 ggtgtctgcaagggtatcatcca 67287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 747,267 Number of Sequences: 3902068 Number of extensions: 747267 Number of successful extensions: 48656 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 48493 Number of HSP's gapped (non-prelim): 152 length of query: 168 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 146 effective length of database: 17,147,199,772 effective search space: 2503491166712 effective search space used: 2503491166712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
