>GGPS_PSEAG (Q93JY3) Glucosylglycerol-phosphate synthase (EC 2.4.1.213)|
           (Glucosyl-glycerol-phosphate synthase) (GG-phosphate
           synthase) (GGPS)
          Length = 755

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 22/93 (23%), Positives = 43/93 (46%)
 Frame = +3

Query: 162 LMIVSDLDHTMVDHHDEENLSLLRFGALWESVYCQDSLLVFSTGRSPTLYKELRKEKPML 341
           +++ +DLD T +    ++ LSL +  A    +      L + TGRS      L  +  + 
Sbjct: 1   MLLATDLDGTFLGGDPKDRLSLYQTIAAHPEIR-----LAYVTGRSLESVLPLLADPTLP 55

Query: 342 TPDITIMSVGSEITYGEAMVPDDGWEEYLNNKW 440
            PD  I  VG+ + +G+++ P    +  ++  W
Sbjct: 56  QPDFIISDVGASLVHGDSLQPIQPLQSAVDALW 88

>DCR1A_CHICK (Q5QJC4) DNA cross-link repair 1A protein (chSNM1A)|
          Length = 972

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 26/91 (28%), Positives = 42/91 (46%)
 Frame = +3

Query: 309 YKELRKEKPMLTPDITIMSVGSEITYGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELK 488
           YK +RK KP   PD T +S+   +T G+      G     +    K++    T + SE +
Sbjct: 14  YKSIRKRKPQSNPDSTSVSM-QTVTKGKCRPKRKG-----SGNRKKSVEKNSTPQKSEQR 67

Query: 489 LQPDTEQRPHKVSFLVDKKNAQGVIKSLSDK 581
           L+P  +  P K    V    AQ  + SL+++
Sbjct: 68  LRPSEDLDPCKDDSSV---YAQESVSSLTEQ 95

>THI1_SCHPO (P36598) Thiamine repressible genes regulatory protein thi1|
           (Transcription factor ntf1)
          Length = 775

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 213 ENLSLLRFGALWESVYCQDSLLVFSTGRSPTLYKE-LRKEKPMLTPDITI 359
           +N   LR   LW SV+C D  +  +TGR P++  E +    P++ PD+ I
Sbjct: 389 QNSKELRNRLLW-SVFCIDRFVSMTTGRRPSIPLECISIPYPVILPDLEI 437

>TALA_POVBK (P03071) Large T antigen|
          Length = 695

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +3

Query: 294 RSPTLYKELRKE-KPMLTPDITIMSVGSEITYGEAMVPDDGWEEYLNNKWDKNIVLEETA 470
           R  TLYK++ ++ K    PD    S     TYG      + W    N KWD+++   E  
Sbjct: 54  RMNTLYKKMEQDVKVAHQPDFGTWSSSEVPTYGTEEW--ESWWSSFNEKWDEDLFCHEDM 111

Query: 471 KFSELKLQPDTEQR--PHKVSFLVDKKN 548
             S+ +   D++    P K   + D K+
Sbjct: 112 FASDEEATADSQHSTPPKKKRKVEDPKD 139

>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)|
          Length = 959

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +3

Query: 330 KPMLTPDITIMSVGSEITYGEAMVPDDGWEEYLNNKWDKNIVLEE--TAKFSELKLQPDT 503
           +P  TP I  M+ GSE T  +       W EY+N+ ++K  +  +   AK  + K+  D 
Sbjct: 381 RPSWTPIIK-MTQGSENTLFKDKFKKGSWGEYVNDNFEKKPITGKGVAAKAVQEKINVDA 439

Query: 504 EQRPHKVSFLVDKKNAQGVIKSL 572
              P K  + + K+  +  I +L
Sbjct: 440 LHNPEK--YQLSKEERKSTIPTL 460

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 468 PSPQEQYSCPTYC*DIPPSHHQEPWPHHTLSQSPRT 361
           PSP+ Q   PTY    PP++ Q P P  T S  P T
Sbjct: 254 PSPRRQPQPPTYS-PPPPAYAQSPQPSPTYSPPPPT 288

>3BP5_DROME (Q9V785) SH3 domain-binding protein 5-like (Parcase protein)|
          Length = 476

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 387 GEAMVPDDGWEEYLN---NKWDKNIVLEETAKFSELKLQPDTEQRP 515
           G+    +D WE  L    +K D  ++L+ETAK  +      TEQRP
Sbjct: 335 GDGQQQNDVWEHELKATVDKLDHLMMLKETAKRQQTNRLKSTEQRP 380

>RFIP2_HUMAN (Q7L804) Rab11 family-interacting protein 2 (Rab11-FIP2) (NRip11)|
          Length = 512

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = -2

Query: 607 SHLPHVSSNLSERDLITP*A----FFLSTKKLTLCGRCS-VSGWSLSSENLAVSS--RTI 449
           +H+P  +S  S  ++         F L  ++L+     S +SG  +SSE L   +  +T 
Sbjct: 191 THMPDANSEFSSGEIQMKSKPKKPFLLGPQRLSSAHSMSDLSGSHMSSEKLKAGTIGQTH 250

Query: 448 FLSHLLLRYSSQPSSGTMASPY 383
            L H L  + + P SG++ SP+
Sbjct: 251 LLGHQLDSFGTVPESGSLKSPH 272

>FATE1_PIG (Q95LB4) Fetal and adult testis expressed transcript protein|
           homolog
          Length = 171

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 266 LAVDRLPKGPEPKQRQVLFVMMIDHRVIEI*NNHQARRALD 144
           LA + +PK  EP + QVL   M++H +  +    Q+R+ LD
Sbjct: 15  LAEELVPKSQEPSREQVLIAEMLEHGIRSL-GASQSRQKLD 54

>W_HENDV (P0C1C6) Protein W|
          Length = 448

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 333 PMLTPDITIMSVGSEIT-YGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELKLQPDTEQ 509
           PM+T D+     G E T +G +  P+ GW  +++   D N+           +  PDT+ 
Sbjct: 109 PMVT-DVVYHDHGGECTGHGPSSSPERGWSYHMSGTHDGNV-----------RAVPDTKV 156

Query: 510 RPHKVSFLVDKKNAQGVIKSLSDKF 584
            P+     V ++  +  +  L DKF
Sbjct: 157 LPNAPKTTVPEEVREIDLIGLEDKF 181

>CCD46_HUMAN (Q8N8E3) Coiled-coil domain-containing protein 46|
          Length = 955

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
 Frame = +3

Query: 312 KELRKEKPMLTPDITIMSVGSEITYGEAMVPDDGWEEYLNNKWDK---NIVLE-ETAKFS 479
           ++L K+   L  D  ++    E    E     +   E LNN W+K   N V E E  KF 
Sbjct: 313 RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFD 372

Query: 480 ELK--------LQPDTEQRPHKV--SFLVDKKNAQGVIKSLSDKFEETWGRCENN 614
             K        L  DT  R +K+   ++   ++   +IK L  + ++  G  EN+
Sbjct: 373 LQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENS 427

>PHOSP_HENDV (O55778) Phosphoprotein (Protein P)|
          Length = 707

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 333 PMLTPDITIMSVGSEIT-YGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELKLQPDTEQ 509
           PM+T D+     G E T +G +  P+ GW  +++   D N+           +  PDT+ 
Sbjct: 109 PMVT-DVVYHDHGGECTGHGPSSSPERGWSYHMSGTHDGNV-----------RAVPDTKV 156

Query: 510 RPHKVSFLVDKKNAQGVIKSLSDKF 584
            P+     V ++  +  +  L DKF
Sbjct: 157 LPNAPKTTVPEEVREIDLIGLEDKF 181

>V_HENDV (O55777) Nonstructural protein V|
          Length = 457

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 333 PMLTPDITIMSVGSEIT-YGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELKLQPDTEQ 509
           PM+T D+     G E T +G +  P+ GW  +++   D N+           +  PDT+ 
Sbjct: 109 PMVT-DVVYHDHGGECTGHGPSSSPERGWSYHMSGTHDGNV-----------RAVPDTKV 156

Query: 510 RPHKVSFLVDKKNAQGVIKSLSDKF 584
            P+     V ++  +  +  L DKF
Sbjct: 157 LPNAPKTTVPEEVREIDLIGLEDKF 181

>NTRK3_PIG (P24786) NT-3 growth factor receptor precursor (EC 2.7.10.1)|
           (Neurotrophic tyrosine kinase receptor type 3) (TrkC
           tyrosine kinase) (GP145-TrkC) (Trk-C)
          Length = 825

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 417 PSHHQEPWPHHTL 379
           P HH +PW HHTL
Sbjct: 480 PLHHDQPWHHHTL 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,478,932
Number of Sequences: 219361
Number of extensions: 1732605
Number of successful extensions: 5696
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5674
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)