ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal4f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472496.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2289 Score = 137 bits (69), Expect = 4e-29 Identities = 252/313 (80%) Strand = Plus / Plus Query: 146 gagatactcatcagccggaacagccctatcctcggcaccatcttccaacgcctccaactc 205 |||||| ||||||||||||||| ||| || |||| ||||| ||| | |||||| || || Sbjct: 1552 gagataatcatcagccggaacaacccaattctcgcaaccatgttcaagcgcctcaaattc 1611 Query: 206 cggcaatgccttggctatctcatcgtcgaggcgtggcccgtgagggcgcctttcgagctg 265 |||||||| |||| ||| || |||||| | |||||| |||| |||||||| ||||| Sbjct: 1612 cggcaatgtcttgcctacctgatcgtccttgggtggcctctgagagcgccttttgagcta 1671 Query: 266 tgctatgcactattgggacctttctgccttctcacaaaccagtccttcttgccaacggca 325 ||||||| | | |||||||||| ||| | ||||||||||| ||||||||||||| |||| Sbjct: 1672 tgctatggattgttgggaccttattgcatactcacaaaccaatccttcttgccaaaggca 1731 Query: 326 tcggatgaaggttttcgcatcccagtagctctattcttgagttaccacatataccacttg 385 || || || ||||| || |||| |||| |||||| | || ||| |||| |||| Sbjct: 1732 tcagaagatggtttcagcgtcccgttagccctattcatatcctataacacatacaacttc 1791 Query: 386 atggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaaccacaggatgcaa 445 |||||||||| || |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 1792 atggagtacatggcgtgcgggctctccgcccgtgcatggtggaacaatcataggatgcaa 1851 Query: 446 cgcatcacctcgg 458 || |||| ||||| Sbjct: 1852 cggatcatctcgg 1864
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 93.7 bits (47), Expect = 5e-16 Identities = 143/175 (81%) Strand = Plus / Minus Query: 146 gagatactcatcagccggaacagccctatcctcggcaccatcttccaacgcctccaactc 205 |||||| ||||||||||||||| ||| || |||| ||||| ||| | |||||| || || Sbjct: 104430 gagataatcatcagccggaacaacccaattctcgcaaccatgttcaagcgcctcaaattc 104371 Query: 206 cggcaatgccttggctatctcatcgtcgaggcgtggcccgtgagggcgcctttcgagctg 265 |||||||| |||| ||| || |||||| | |||||| |||| |||||||| ||||| Sbjct: 104370 cggcaatgtcttgcctacctgatcgtccttgggtggcctctgagagcgccttttgagcta 104311 Query: 266 tgctatgcactattgggacctttctgccttctcacaaaccagtccttcttgccaa 320 ||||||| | | |||||||||| ||| | ||||||||||| ||||||||||||| Sbjct: 104310 tgctatggattgttgggaccttattgcatactcacaaaccaatccttcttgccaa 104256 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 376 ataccacttgatggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaacca 435 |||| |||| |||||||||| || |||||||||||| ||||| || ||||||||||| || Sbjct: 104088 atacaacttcatggagtacatggcgtgcgggctctccgcccgtgcatggtggaacaatca 104029 Query: 436 caggatgcaacgcatcacctcgg 458 ||||||||||| |||| ||||| Sbjct: 104028 taggatgcaacggatcatctcgg 104006 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 2 gacattttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacacc 61 ||||||||||| || || ||||||||||| || ||||||| ||| || |||||| ||| Sbjct: 111126 gacattttgactgggcagcggatccatgcagcaggttggagatctgcaaagttggaaacc 111067 Query: 62 aacccaccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttc 121 | ||||| ||||||||||| || || || || || ||||| || || | ||||||||| Sbjct: 111066 gaaccaccagcattcttgggctgcgcaccaacgggtggaccagcttgcctaacccagttc 111007 Query: 122 aagagatgggcaac 135 |||||||||||||| Sbjct: 111006 aagagatgggcaac 110993 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 387 tggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaaccacaggatgcaac 446 ||||||||| ||| || |||||||||| || |||||||||||||||||||| ||||||| Sbjct: 110575 tggagtacatggaatgtgggctctctgtacgtgcctggtggaacaaccacagaatgcaac 110516 Query: 447 gcatca 452 | |||| Sbjct: 110515 ggatca 110510
>tpg|BK000085.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) cellulose synthase-like H2 gene, complete cds Length = 4907 Score = 93.7 bits (47), Expect = 5e-16 Identities = 143/175 (81%) Strand = Plus / Plus Query: 146 gagatactcatcagccggaacagccctatcctcggcaccatcttccaacgcctccaactc 205 |||||| ||||||||||||||| ||| || |||| ||||| ||| | |||||| || || Sbjct: 3700 gagataatcatcagccggaacaacccaattctcgcaaccatgttcaagcgcctcaaattc 3759 Query: 206 cggcaatgccttggctatctcatcgtcgaggcgtggcccgtgagggcgcctttcgagctg 265 |||||||| |||| ||| || |||||| | |||||| |||| |||||||| ||||| Sbjct: 3760 cggcaatgtcttgcctacctgatcgtccttgggtggcctctgagagcgccttttgagcta 3819 Query: 266 tgctatgcactattgggacctttctgccttctcacaaaccagtccttcttgccaa 320 ||||||| | | |||||||||| ||| | ||||||||||| ||||||||||||| Sbjct: 3820 tgctatggattgttgggaccttattgcatactcacaaaccaatccttcttgccaa 3874 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 376 ataccacttgatggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaacca 435 |||| |||| |||||||||| || |||||||||||| ||||| || ||||||||||| || Sbjct: 4042 atacaacttcatggagtacatggcgtgcgggctctccgcccgtgcatggtggaacaatca 4101 Query: 436 caggatgcaacgcatcacctcgg 458 ||||||||||| |||| ||||| Sbjct: 4102 taggatgcaacggatcatctcgg 4124
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 5e-16 Identities = 143/175 (81%) Strand = Plus / Minus Query: 146 gagatactcatcagccggaacagccctatcctcggcaccatcttccaacgcctccaactc 205 |||||| ||||||||||||||| ||| || |||| ||||| ||| | |||||| || || Sbjct: 21290956 gagataatcatcagccggaacaacccaattctcgcaaccatgttcaagcgcctcaaattc 21290897 Query: 206 cggcaatgccttggctatctcatcgtcgaggcgtggcccgtgagggcgcctttcgagctg 265 |||||||| |||| ||| || |||||| | |||||| |||| |||||||| ||||| Sbjct: 21290896 cggcaatgtcttgcctacctgatcgtccttgggtggcctctgagagcgccttttgagcta 21290837 Query: 266 tgctatgcactattgggacctttctgccttctcacaaaccagtccttcttgccaa 320 ||||||| | | |||||||||| ||| | ||||||||||| ||||||||||||| Sbjct: 21290836 tgctatggattgttgggaccttattgcatactcacaaaccaatccttcttgccaa 21290782 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 376 ataccacttgatggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaacca 435 |||| |||| |||||||||| || |||||||||||| ||||| || ||||||||||| || Sbjct: 21290614 atacaacttcatggagtacatggcgtgcgggctctccgcccgtgcatggtggaacaatca 21290555 Query: 436 caggatgcaacgcatcacctcgg 458 ||||||||||| |||| ||||| Sbjct: 21290554 taggatgcaacggatcatctcgg 21290532 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 2 gacattttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacacc 61 ||||||||||| || || ||||||||||| || ||||||| ||| || |||||| ||| Sbjct: 21297652 gacattttgactgggcagcggatccatgcagcaggttggagatctgcaaagttggaaacc 21297593 Query: 62 aacccaccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttc 121 | ||||| ||||||||||| || || || || || ||||| || || | ||||||||| Sbjct: 21297592 gaaccaccagcattcttgggctgcgcaccaacgggtggaccagcttgcctaacccagttc 21297533 Query: 122 aagagatgggcaac 135 |||||||||||||| Sbjct: 21297532 aagagatgggcaac 21297519 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 387 tggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaaccacaggatgcaac 446 ||||||||| ||| || |||||||||| || |||||||||||||||||||| ||||||| Sbjct: 21297101 tggagtacatggaatgtgggctctctgtacgtgcctggtggaacaaccacagaatgcaac 21297042 Query: 447 gcatca 452 | |||| Sbjct: 21297041 ggatca 21297036
>ref|NM_185228.2| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2379 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 387 tggagtacaaggagtgcgggctctctgcccgcgcctggtggaacaaccacaggatgcaac 446 ||||||||| ||| || |||||||||| || |||||||||||||||||||| ||||||| Sbjct: 1886 tggagtacatggaatgtgggctctctgtacgtgcctggtggaacaaccacagaatgcaac 1945 Query: 447 gcatca 452 | |||| Sbjct: 1946 ggatca 1951 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Plus Query: 2 gacattttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacacc 61 ||||||||||| || || ||||||||||| || ||||||| ||| || |||||| ||| Sbjct: 1501 gacattttgactgggcagcggatccatgcagcaggttggagatctgcaaagttggaaacc 1560 Query: 62 aacccaccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttc 121 | ||||| ||||||||||| || || || || || ||||| || || | ||||||||| Sbjct: 1561 gaaccaccagcattcttgggctgcgcaccaacgggtggaccagcttgcctaacccagttc 1620 Query: 122 aagagatgggcaac 135 |||||||||||||| Sbjct: 1621 aagagatgggcaac 1634
>ref|NM_195864.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0035F15.9), mRNA Length = 2742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 172/219 (78%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 1611 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 1670 Query: 298 cacaaaccagtccttcttgccaacggcatcggatgaaggttttcgcatcccagtagctct 357 ||||||| ||||||||||||| | |||| || || ||||| |||| || ||||||| Sbjct: 1671 atcaaaccaatccttcttgccaaagacatcagaagacggtttctacatcgcattagctct 1730 Query: 358 attcttgagttaccacatataccacttgatggagtacaaggagtgcgggctctctgcccg 417 |||| | || ||| |||| || ||||||| || ||||| |||| ||||| || Sbjct: 1731 attcattgcctataacacatacatgttcatggagttcatagagtgtgggcagtctgcacg 1790 Query: 418 cgcctggtggaacaaccacaggatgcaacgcatcacctc 456 || || ||||||||||||||||||||||| |||||||| Sbjct: 1791 tgcatgttggaacaaccacaggatgcaacggatcacctc 1829 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 1381 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 1440 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 1441 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 1500 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 1501 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 1551
>gb|AC119148.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0035F15, complete sequence Length = 138335 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 66419 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 66478 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 66479 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 66538 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 66539 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 66589 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 425 tggaacaaccacaggatgcaacgcatcacctc 456 ||||||||||||||||||||||| |||||||| Sbjct: 67001 tggaacaaccacaggatgcaacggatcacctc 67032 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 66649 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 66708 Query: 298 cacaaaccagtccttcttgccaa 320 ||||||| ||||||||||||| Sbjct: 66709 atcaaaccaatccttcttgccaa 66731
>tpg|BK000084.1| TPA: TPA_exp: Oryza sativa cellulose synthase-like H1 gene, complete cds Length = 5600 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 4425 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 4484 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 4485 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 4544 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 4545 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 4595 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 425 tggaacaaccacaggatgcaacgcatcacctc 456 ||||||||||||||||||||||| |||||||| Sbjct: 5007 tggaacaaccacaggatgcaacggatcacctc 5038 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 4655 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 4714 Query: 298 cacaaaccagtccttcttgccaa 320 ||||||| ||||||||||||| Sbjct: 4715 atcaaaccaatccttcttgccaa 4737
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 9578346 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 9578405 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 9578406 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 9578465 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 9578466 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 9578516 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 425 tggaacaaccacaggatgcaacgcatcacctc 456 ||||||||||||||||||||||| |||||||| Sbjct: 9578928 tggaacaaccacaggatgcaacggatcacctc 9578959 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 9578576 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 9578635 Query: 298 cacaaaccagtccttcttgccaa 320 ||||||| ||||||||||||| Sbjct: 9578636 atcaaaccaatccttcttgccaa 9578658
>gb|AF435646.1| Oryza sativa CSLH1 mRNA, partial cds Length = 2393 Score = 61.9 bits (31), Expect = 2e-06 Identities = 172/219 (78%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 1592 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 1651 Query: 298 cacaaaccagtccttcttgccaacggcatcggatgaaggttttcgcatcccagtagctct 357 ||||||| ||||||||||||| | |||| || || ||||| |||| || ||||||| Sbjct: 1652 atcaaaccaatccttcttgccaaagacatcagaagacggtttctacatcgcattagctct 1711 Query: 358 attcttgagttaccacatataccacttgatggagtacaaggagtgcgggctctctgcccg 417 |||| | || ||| |||| || ||||||| || ||||| |||| ||||| || Sbjct: 1712 attcattgcctataacacatacatgttcatggagttcatagagtgtgggcagtctgcacg 1771 Query: 418 cgcctggtggaacaaccacaggatgcaacgcatcacctc 456 || || ||||||||||||||||||||||| |||||||| Sbjct: 1772 tgcatgttggaacaaccacaggatgcaacggatcacctc 1810 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 1362 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 1421 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 1422 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 1481 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 1482 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 1532
>dbj|AK121003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045B21, full insert sequence Length = 2658 Score = 61.9 bits (31), Expect = 2e-06 Identities = 172/219 (78%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 1657 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 1716 Query: 298 cacaaaccagtccttcttgccaacggcatcggatgaaggttttcgcatcccagtagctct 357 ||||||| ||||||||||||| | |||| || || ||||| |||| || ||||||| Sbjct: 1717 atcaaaccaatccttcttgccaaagacatcagaagacggtttctacatcgcattagctct 1776 Query: 358 attcttgagttaccacatataccacttgatggagtacaaggagtgcgggctctctgcccg 417 |||| | || ||| |||| || ||||||| || ||||| |||| ||||| || Sbjct: 1777 attcattgcctataacacatacatgttcatggagttcatagagtgtgggcagtctgcacg 1836 Query: 418 cgcctggtggaacaaccacaggatgcaacgcatcacctc 456 || || ||||||||||||||||||||||| |||||||| Sbjct: 1837 tgcatgttggaacaaccacaggatgcaacggatcacctc 1875 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 1427 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 1486 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 1487 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 1546 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 1547 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 1597
>dbj|AK069071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010H01, full insert sequence Length = 2386 Score = 61.9 bits (31), Expect = 2e-06 Identities = 172/219 (78%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 1616 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 1675 Query: 298 cacaaaccagtccttcttgccaacggcatcggatgaaggttttcgcatcccagtagctct 357 ||||||| ||||||||||||| | |||| || || ||||| |||| || ||||||| Sbjct: 1676 atcaaaccaatccttcttgccaaagacatcagaagacggtttctacatcgcattagctct 1735 Query: 358 attcttgagttaccacatataccacttgatggagtacaaggagtgcgggctctctgcccg 417 |||| | || ||| |||| || ||||||| || ||||| |||| ||||| || Sbjct: 1736 attcattgcctataacacatacatgttcatggagttcatagagtgtgggcagtctgcacg 1795 Query: 418 cgcctggtggaacaaccacaggatgcaacgcatcacctc 456 || || ||||||||||||||||||||||| |||||||| Sbjct: 1796 tgcatgttggaacaaccacaggatgcaacggatcacctc 1834 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 1386 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 1445 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 1446 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 1505 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 1506 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 1556
>dbj|AK061162.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-A01, full insert sequence Length = 1187 Score = 61.9 bits (31), Expect = 2e-06 Identities = 172/219 (78%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 242 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 301 Query: 298 cacaaaccagtccttcttgccaacggcatcggatgaaggttttcgcatcccagtagctct 357 ||||||| ||||||||||||| | |||| || || ||||| |||| || ||||||| Sbjct: 302 atcaaaccaatccttcttgccaaagacatcagaagacggtttctacatcgcattagctct 361 Query: 358 attcttgagttaccacatataccacttgatggagtacaaggagtgcgggctctctgcccg 417 |||| | || ||| |||| || ||||||| || ||||| |||| ||||| || Sbjct: 362 attcattgcctataacacatacatgttcatggagttcatagagtgtgggcagtctgcacg 421 Query: 418 cgcctggtggaacaaccacaggatgcaacgcatcacctc 456 || || ||||||||||||||||||||||| |||||||| Sbjct: 422 tgcatgttggaacaaccacaggatgcaacggatcacctc 460 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 12 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 71 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 72 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 131 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 132 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 182
>dbj|AK060286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-C08, full insert sequence Length = 1719 Score = 61.9 bits (31), Expect = 2e-06 Identities = 172/219 (78%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 716 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 775 Query: 298 cacaaaccagtccttcttgccaacggcatcggatgaaggttttcgcatcccagtagctct 357 ||||||| ||||||||||||| | |||| || || ||||| |||| || ||||||| Sbjct: 776 atcaaaccaatccttcttgccaaagacatcagaagacggtttctacatcgcattagctct 835 Query: 358 attcttgagttaccacatataccacttgatggagtacaaggagtgcgggctctctgcccg 417 |||| | || ||| |||| || ||||||| || ||||| |||| ||||| || Sbjct: 836 attcattgcctataacacatacatgttcatggagttcatagagtgtgggcagtctgcacg 895 Query: 418 cgcctggtggaacaaccacaggatgcaacgcatcacctc 456 || || ||||||||||||||||||||||| |||||||| Sbjct: 896 tgcatgttggaacaaccacaggatgcaacggatcacctc 934 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 486 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 545 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 546 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 605 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 606 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 656
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Plus Query: 8 ttgaccggacaacggatccatgcggcgggttggaaatcggccttgttggacaccaaccca 67 ||||||||||||||||||||||| |||||||||| ||| | || |||| | | | ||| Sbjct: 9584385 ttgaccggacaacggatccatgcagcgggttggagatccacgctgatggaaatcgaacca 9584444 Query: 68 ccggcattcttgggatgtgctccgaccgggggaccggccagcttgacccagttcaagaga 127 || |||||| |||| ||||| || | || || || ||| || | |||||||| |||||| Sbjct: 9584445 ccagcattcatgggttgtgcaccaaatggagggcccgcctgcctaacccagttgaagaga 9584504 Query: 128 tgggcaacaggggttctggagatactcatcagccggaacagccctatcctc 178 |||||| |||| || | || ||||||||||| ||||| | ||| |||||| Sbjct: 9584505 tgggcatcaggttttttagaaatactcatcagtcggaataacccaatcctc 9584555 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 425 tggaacaaccacaggatgcaacgcatcacctc 456 ||||||||||||||||||||||| |||||||| Sbjct: 9584967 tggaacaaccacaggatgcaacggatcacctc 9584998 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 238 gtggcccgtgagggcgcctttcgagctgtgctatgcactattgggacctttctgccttct 297 |||||| |||||||| |||||||| ||||||||||| | ||||| |||| ||| | || Sbjct: 9584615 gtggcctgtgagggcacctttcgaattgtgctatgcattgttggggccttattgcttact 9584674 Query: 298 cacaaaccagtccttcttgccaa 320 ||||||| ||||||||||||| Sbjct: 9584675 atcaaaccaatccttcttgccaa 9584697
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 ttctgccttctcacaaaccagt 308 |||||||||||||||||||||| Sbjct: 3622284 ttctgccttctcacaaaccagt 3622263
>emb|AL844166.6| Mouse DNA sequence from clone RP23-107K21 on chromosome 2, complete sequence Length = 215505 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 123 agagatgggcaacaggggttctggag 148 ||||||||||||| |||||||||||| Sbjct: 177121 agagatgggcaactggggttctggag 177146
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ccgaccgggggaccggccagc 109 ||||||||||||||||||||| Sbjct: 4404596 ccgaccgggggaccggccagc 4404616
>gb|BC107835.1| Danio rerio cDNA clone IMAGE:7015319, partial cds Length = 920 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tctgccttctcacaaaccagtcct 311 ||||||||||| |||||||||||| Sbjct: 224 tctgccttctctcaaaccagtcct 201
>gb|BC070515.1| Rattus norvegicus putative small membrane protein NID67, mRNA (cDNA clone MGC:91428 IMAGE:7100997), complete cds Length = 1655 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 cacaaaccagtccttcttgccaac 321 |||||| ||||||||||||||||| Sbjct: 1119 cacaaagcagtccttcttgccaac 1096
>gb|AC127371.3| Mus musculus BAC clone RP23-35D4 from 15, complete sequence Length = 210688 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 285 ctttctgccttctcacaaaccagtcctt 312 ||||||| ||||||||||||| |||||| Sbjct: 193823 ctttctgtcttctcacaaaccggtcctt 193796
>ref|XM_690849.1| PREDICTED: Danio rerio similar to tetracycline transporter-like protein (LOC567553), partial mRNA Length = 1665 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tctgccttctcacaaaccagtcct 311 ||||||||||| |||||||||||| Sbjct: 1461 tctgccttctctcaaaccagtcct 1438
>gb|AF426826.1|AF426826 Rhodococcus rhodochrous epoxyalkane:coenzyme M transferase gene, complete cds Length = 1107 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 ccgaccgggggaccggccagcttg 112 |||| ||||||||||||||||||| Sbjct: 299 ccgatcgggggaccggccagcttg 276
>gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosome 17, complete sequence Length = 196752 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 123 agagatgggcaacaggggttctggagat 150 ||||||||||||| |||||||| ||||| Sbjct: 107183 agagatgggcaactggggttcttgagat 107156
>gb|AF313411.1| Rattus norvegicus putative small membrane protein NID67 mRNA, complete cds Length = 1515 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 cacaaaccagtccttcttgccaac 321 |||||| ||||||||||||||||| Sbjct: 918 cacaaagcagtccttcttgccaac 895
>gb|BC093418.1| Danio rerio hypothetical protein LOC553399, mRNA (cDNA clone IMAGE:7158918), partial cds Length = 960 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tctgccttctcacaaaccagtcct 311 ||||||||||| |||||||||||| Sbjct: 250 tctgccttctctcaaaccagtcct 227
>gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosome 17, complete sequence Length = 186842 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 123 agagatgggcaacaggggttctggagat 150 ||||||||||||| |||||||| ||||| Sbjct: 156852 agagatgggcaactggggttcttgagat 156879
>ref|NM_173126.2| Rattus norvegicus putative small membrane protein NID67 (Nid67), mRNA Length = 1655 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 cacaaaccagtccttcttgccaac 321 |||||| ||||||||||||||||| Sbjct: 1119 cacaaagcagtccttcttgccaac 1096
>emb|AJ338131.1|HSA338131 Homo sapiens genomic sequence surrounding NotI site, clone NL1-DH4R Length = 703 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tttctgccttctcacaaacc 305 |||||||||||||||||||| Sbjct: 491 tttctgccttctcacaaacc 510
>gb|AC134793.10| Mus musculus chromosome 15, clone RP23-159M8, complete sequence Length = 216860 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 285 ctttctgccttctcacaaaccagtcctt 312 ||||||| ||||||||||||| |||||| Sbjct: 170357 ctttctgtcttctcacaaaccggtcctt 170384 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,195,075 Number of Sequences: 3902068 Number of extensions: 3195075 Number of successful extensions: 55910 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55701 Number of HSP's gapped (non-prelim): 196 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
