ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal4f08 |
|---|---|
| Clone Library Name | barley_pub |
>PALI1_KLULA (Q6CXZ7) pH-response regulator palI/RIM9 homolog 1| Length = 220 Score = 36.6 bits (83), Expect = 0.057 Identities = 27/107 (25%), Positives = 51/107 (47%) Frame = +3 Query: 57 VYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLS 236 ++ P AK +K+ LL+++ F + V LFA ++ + W+ SV +F S Sbjct: 76 LHLPNHAKYALSKL-LLVHVLSFVCVLVFWLFAI-----LICIKWLNTSKSVLLFAVGWS 129 Query: 237 IIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNIL 377 ++ T V + F + + + S + W + +L+ +VAL IL Sbjct: 130 MV-----TFMVSLLGFLIDVLMFASHVTWSSWLMLVSAFFVALSGIL 171
>GP158_HUMAN (Q5T848) Probable G-protein coupled receptor 158 precursor| Length = 1215 Score = 33.9 bits (76), Expect = 0.37 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Frame = +3 Query: 39 YIIMYLVYAPRKAKIFTAKIVLLLNIAGFG---LIFVLTLFAFHGET-RVVSLGWI-CVG 203 ++ M +VY RKAK A ++LL FG L F + + F T R + L W +G Sbjct: 432 FVSMLVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLRWARLLG 491 Query: 204 FSVCVFVAPLSI--IGRVIKTKSVEYMPFSLS------LTLTLSAIVWFLYG 335 F+ L + + +V +++ + +P+ L + L + WFL G Sbjct: 492 FATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLAVILLVVFWFLIG 543
>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor| Length = 1200 Score = 32.7 bits (73), Expect = 0.83 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Frame = +3 Query: 39 YIIMYLVYAPRKAKIFTAKIVLLLNIAGFG---LIFVLTLFAFHGET-RVVSLGWI-CVG 203 ++ M +VY RKAK A ++LL FG L F + + F T R + L W +G Sbjct: 432 FVSMLVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLRWARLLG 491 Query: 204 FSVCVFVAPLSI--IGRVIKTKSVEYMPFSLS------LTLTLSAIVWFLYG 335 F+ L + + +V +++ + +P+ L + + + WFL G Sbjct: 492 FATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLAVIVLVVFWFLVG 543
>Y1375_METJA (Q58770) Hypothetical protein MJ1375| Length = 415 Score = 32.7 bits (73), Expect = 0.83 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 18/161 (11%) Frame = +3 Query: 30 ETVYIIMYLVYAPRKAKIFTAKIVLLLNIAGFGLI-------FVLTLF----------AF 158 +++YI+M +Y+ A +F LL FG++ LT+F F Sbjct: 6 DSIYILMSNLYSKGMAYLFYFITAFLLGTEAFGILKGLMPIADTLTIFFSSGIPPAIAKF 65 Query: 159 HGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTKSVEYMPFSL-SLTLTLSAIVWFLYG 335 E + V + + + LS++G ++ Y+ + L L L I++F G Sbjct: 66 LAEEKEVDINKY---IPILYLMILLSVVGFIL----TPYIKYILGGHYLNLPNILYFAVG 118 Query: 336 LLIKDKYVALPNILGFTFGMIQMVLYMFYMNATPVVATDAK 458 L V ++ F+ G++Q +L M Y++ T +V AK Sbjct: 119 LC-----VVASTVIAFSRGILQGLLKMKYLSLTWIVEYTAK 154
>O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor OR1-67)| Length = 317 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Frame = +3 Query: 222 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 395 + P ++ +V+ +++ + + L LTL+ +FL GL+ D+YVA+ N L + M Sbjct: 77 IVPKMLVDQVMSQRAISFAGCTAQHFLYLTLAGAEFFLLGLMSYDRYVAICNPLHYPVLM 136 Query: 396 IQMVLYM 416 + + ++ Sbjct: 137 SRKICWL 143
>OR2T1_HUMAN (O43869) Olfactory receptor 2T1 (Olfactory receptor 1-25) (OR1-25)| (Olfactory receptor OR1-61) Length = 311 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = +3 Query: 222 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 395 + P ++ ++ +++ ++ + L LTL +FL GL+ D+YVA+ N L + M Sbjct: 76 IVPKMLVNYLLDQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLM 135 Query: 396 IQMVLYM 416 + V +M Sbjct: 136 SRRVCWM 142
>Y110_METJA (Q57574) Hypothetical protein MJ0110| Length = 93 Score = 30.8 bits (68), Expect = 3.2 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +3 Query: 225 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTF 389 A L + + +K K + + + +T T +W +YG+L D + + NIL F Sbjct: 23 ASLPQLIKSLKEKDMSNISLAFVITFTTGLTLWLIYGILRNDYPIIVFNILSLMF 77
>RS7_DEHSC (Q3ZZM7) 30S ribosomal protein S7| Length = 156 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -2 Query: 388 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 281 +VKPR G ATY + + RP R QTMA+R ++ K Sbjct: 74 EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110
>RS7_DEHE1 (Q3Z984) 30S ribosomal protein S7| Length = 156 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -2 Query: 388 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 281 +VKPR G ATY + + RP R QTMA+R ++ K Sbjct: 74 EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110
>DCTA1_PSEAE (Q9I713) C4-dicarboxylate transport protein 1| Length = 449 Score = 30.8 bits (68), Expect = 3.2 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 20/139 (14%) Frame = +3 Query: 96 IVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTKSVEY 275 IV L + FG + T A +G + LG + + F V ++++G V++ V Sbjct: 199 IVRLAPLGVFGAVAFTT--ARYGVDSLSHLGALVLVFYATCLVFVMAVLGSVLRLSGVRM 256 Query: 276 MPF-------------SLSLTLTLSAIVWFLYGLLIKDKYVALP-------NILGFTFGM 395 +PF + S L ++ L + I+ V L N+ GF+ + Sbjct: 257 LPFLRYFREELLIVMGTASSDAVLPQVMRKLEHMGIRSSTVGLVIPTGYSFNLDGFSIYL 316 Query: 396 IQMVLYMFYMNATPVVATD 452 V+++ ++ TP+ TD Sbjct: 317 TLAVVFIAHVTGTPLAMTD 335
>DSBD_PASMU (Q9CP40) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 576 Score = 30.4 bits (67), Expect = 4.1 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Frame = +3 Query: 54 LVYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICV---GFSVCVFV 224 L+Y + +FT I L L G GL + + F S W+ F + Sbjct: 324 LLYVAQSGDLFTGAITLYLLALGMGLPLIF-ITVFGNNILPKSGNWMIQVKNAFGFVLLA 382 Query: 225 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGMIQM 404 P+ +I RV +E MP SL S +W LY +K V + F G++ Sbjct: 383 LPIFLISRVF--PEIE-MPLWFSLAFAFS--LWLLYQFR-NNKGVW---VFTFILGVMGY 433 Query: 405 VLYMFYMN 428 + Y + MN Sbjct: 434 LYYSYAMN 441
>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2333 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = -2 Query: 574 SPAISVTGRTSAHELLSALPTLITTTWSSAGTFHASFPSLASVATT 437 S A V+G +S E+ S+LP+ T+ +G FH +FP++ V T Sbjct: 1698 SGAAEVSGESSGAEVGSSLPS---GTYEGSGNFHPAFPTVFLVDRT 1740
>Y1376_HAEIN (P44170) Hypothetical protein HI1376| Length = 291 Score = 30.0 bits (66), Expect = 5.4 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 24/164 (14%) Frame = +3 Query: 12 AAGCVIETVYIIMY--LVYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVS- 182 A G ++ +V+IIM + +A ++ L L I LIF TL +++++ Sbjct: 71 ALGLLLPSVFIIMSKAVEFAGIVRSDAAQRLSLFLPILAAFLIFHETL----SQSKIIGV 126 Query: 183 ----LGWICV------GFSVCVFVAPLSIIG-----RVIK------TKSVEYMPFSLSLT 299 +G C+ G S F L +IG +I KS P +L ++ Sbjct: 127 VLAFIGLFCLLTKPTQGQSAVNFKGVLGLIGVWFGYGIIDILFKQVAKSGGAFPATLFIS 186 Query: 300 LTLSAIVWFLYGLLIKDKYVALPNILGFTFGMIQMVLYMFYMNA 431 +L+A V F+Y L + ++ + I G G++ +FY+ A Sbjct: 187 FSLAACVMFIYLFLKRVQWTSSSVIGGIVLGVLNFFNILFYIKA 230
>Y048_UREPA (Q9PR97) Hypothetical protein UU048| Length = 496 Score = 30.0 bits (66), Expect = 5.4 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Frame = +3 Query: 36 VYIIMYLVYAPRKAKIFTAKIVLLLNIAGFGLIFVLTLF--AFHGETRVVSLGWICVGFS 209 + +I+Y+V+ +K + + LLN+ I L+LF VVSL + + + Sbjct: 332 IILILYMVFTLKKRLSVKSSLNTLLNLVVTQTILSLSLFLVTLFNSKSVVSLINVFITIT 391 Query: 210 VCVFVAPLSII-GRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKY 356 V + V + I + I TK + + + L + +AIV F Y LL D + Sbjct: 392 VQMSVFGIYIFQNKNISTKLLVLLKVIMILIILTAAIVGFDY-LLTSDHH 440
>CYB_TRYBB (P00164) Cytochrome b| Length = 363 Score = 29.6 bits (65), Expect = 7.0 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%) Frame = +3 Query: 84 FTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTK 263 FT+ + LLL I F I ++ LF H L W +GF + VF+ ++ IG V+ Sbjct: 77 FTSLLYLLLYIHIFKSITLIILFDTH------ILVWF-IGFILFVFIIIIAFIGYVLPCT 129 Query: 264 SVEYMPFSL--SLTLTLSAI-VWFLYGL----LIKD--------KYVALPNILGFTFGMI 398 + Y ++ ++ T+ + +W Y + I D +V LP IL +I Sbjct: 130 MMSYWGLTVFSNIIATVPILGIWLCYWIWGSEFINDFTLLKLHVLHVLLPFIL-----LI 184 Query: 399 QMVLYMFYMN 428 ++L++F ++ Sbjct: 185 ILILHLFCLH 194
>Y112B_HAEIN (O86233) Hypothetical protein HI1126.1| Length = 371 Score = 29.6 bits (65), Expect = 7.0 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 13/81 (16%) Frame = +3 Query: 18 GCVIETVYII-------MYLV-----YAPR-KAKIFTAKIVLLLNIAGFGLIFVLTLFAF 158 G +IE +++I Y V Y P K KI+ ++ LLNIAG G IF L A Sbjct: 24 GKIIEKIFVINPKRQTPAYQVNDGVDYMPMSKTKIW---LIQLLNIAGTGPIFGPILGAL 80 Query: 159 HGETRVVSLGWICVGFSVCVF 221 +G V++ WI +G C+F Sbjct: 81 YGP---VAMLWIVIG---CIF 95
>OR2T2_HUMAN (Q6IF00) Olfactory receptor 2T2 (Olfactory receptor OR1-43)| Length = 324 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = +3 Query: 210 VCVFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAI--VWFLYGLLIKDKYVALPNILGF 383 +C+ V P + + K K++ ++ ++ + L L+ I +FL GL+ D+YVA+ N L + Sbjct: 75 ICITV-PKMLQDLLSKDKTISFLGCAVQIFLYLTLIGGEFFLLGLMAYDRYVAVCNPLRY 133 Query: 384 TFGMIQMV 407 M + V Sbjct: 134 PLLMNRRV 141
>NU2M_ASTPE (Q33819) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 354 Score = 29.3 bits (64), Expect = 9.2 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 13/91 (14%) Frame = +3 Query: 63 APRKAKIFTAKIVLLLNIAGFGLIFVLT-------------LFAFHGETRVVSLGWICVG 203 AP ++ + + + +A G++ VL +FAF + + +GWIC Sbjct: 137 APFAVLVYVVESLNISLLASLGVLSVLVGGWGGLNQTQMRKIFAF---SSIAHIGWICST 193 Query: 204 FSVCVFVAPLSIIGRVIKTKSVEYMPFSLSL 296 V VA + ++ +I SV +M S L Sbjct: 194 VGYSVSVACVMLVAYIIINSSVFFMANSFDL 224
>PUS3_YEAST (P31115) tRNA pseudouridine synthase 3 (EC 5.4.99.-) (tRNA-uridine| isomerase 3) (tRNA pseudouridylate synthase 3) (Depressed growth-rate protein DEG1) Length = 442 Score = 29.3 bits (64), Expect = 9.2 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -2 Query: 256 LITRPMMLRGATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPK 122 LI R L A K H+EK I+ ++ ++S + R + K +PK Sbjct: 38 LIRRITELENANKPHSEKFQHIEDNKKRKISQEEVTRSKAKKAPK 82
>MRAY_PELUB (Q4FPK2) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 29.3 bits (64), Expect = 9.2 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 10/132 (7%) Frame = +3 Query: 72 KAKIFTAKIVLLLNIAGFGLIFVLT----LFAFHGETRVVSLGWICVGFSVCVFVAPLSI 239 K KI + ++ ++ I G + T L+ + +++LGW + FS+ + V + Sbjct: 132 KFKIISQILIAIVGIYGLTQLSQNTELTNLYFPFFKNLIINLGWFFIPFSIFIIVGSSNA 191 Query: 240 IGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILG------FTFGMIQ 401 + + +P + L A + ++ G ++ +Y+ +P + G F +I Sbjct: 192 VNLTDGLDGLATVP--VILVAACFAFISYVTGNIVFSEYLNIPYLEGMGEVSVFCGSIIG 249 Query: 402 MVLYMFYMNATP 437 L + NA P Sbjct: 250 ACLGFLWFNAPP 261
>Y3374_BACAN (Q81N43) UPF0078 membrane protein BA3374/GBAA3374/BAS3128| Length = 190 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = +3 Query: 192 ICVGFSVCVFVAPLSI-IGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALP 368 + V +F++PL + +G V+ ++ + + +SL+ L+ I F+Y L+ +DK + Sbjct: 104 VATATGVFLFLSPLGVLVGFVVFVLTLLFTKY-VSLSSMLAGIALFIYSLIFEDKVIIAL 162 Query: 369 NIL 377 ++L Sbjct: 163 SLL 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,518,949 Number of Sequences: 219361 Number of extensions: 1009689 Number of successful extensions: 4073 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4070 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
