ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal4f01 |
|---|---|
| Clone Library Name | barley_pub |
>ZFX_BOVIN (O62836) Zinc finger X-chromosomal protein| Length = 800 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ R C + + +S H H Sbjct: 421 PCMICGKKFKSRGFLK-RHMKNHPEHLTKKKYRCTDCDYTTNKKISLHNH 469
>ZFX_MOUSE (P17012) Zinc finger X-chromosomal protein| Length = 839 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ R C + + +S H H Sbjct: 420 PCMICGKKFKSRGFLK-RHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNH 468
>ZFX_HUMAN (P17010) Zinc finger X-chromosomal protein| Length = 805 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ R C + + +S H H Sbjct: 426 PCMICGKKFKSRGFLK-RHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNH 474
>ZFA_MOUSE (P23607) Zinc finger autosomal protein| Length = 742 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ R C + + +S H H Sbjct: 363 PCMICGKKFKSRGFLK-RHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNH 411
>ZFY1_XENLA (Q01611) Zinc finger Y-chromosomal protein 1 (ZFY-1)| Length = 794 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L R R C + + +S H H Sbjct: 412 PCMICGKKFKSRGFLK-RHMKNHPEHLVRKKYRCTDCDYTTNKKVSLHNH 460
>FBX41_MOUSE (Q6NS60) F-box only protein 41| Length = 872 Score = 30.4 bits (67), Expect = 3.9 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -3 Query: 461 VQPEHPCPRPSGIPNRCLRYL-HLWP 387 V P HPC +P+ NRCL+ + WP Sbjct: 715 VAPLHPCQQPTRFSNRCLQMIGRCWP 740
>ZFY_PANTR (Q6B4Z5) Zinc finger Y-chromosomal protein| Length = 801 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ C + + +S H H Sbjct: 422 PCMICGKKFKSRGFLK-RHMKNHPEHLAKKKYHCTDCDYTTNKKISLHNH 470
>ZFY_HUMAN (P08048) Zinc finger Y-chromosomal protein| Length = 801 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ C + + +S H H Sbjct: 422 PCMICGKKFKSRGFLK-RHMKNHPEHLAKKKYHCTDCDYTTNKKISLHNH 470
>ZFY_GORGO (Q52V16) Zinc finger Y-chromosomal protein| Length = 801 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC CG + RG + RH + HP L++ C + + +S H H Sbjct: 422 PCMICGKKFKSRGFLK-RHMKNHPEHLAKKKYHCTDCDYTTNKKISLHNH 470
>FBX41_HUMAN (Q8TF61) F-box only protein 41| Length = 874 Score = 30.4 bits (67), Expect = 3.9 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -3 Query: 461 VQPEHPCPRPSGIPNRCLRYL-HLWP 387 V P HPC +P+ NRCL+ + WP Sbjct: 717 VAPLHPCQQPTRFSNRCLQMIGRCWP 742
>ZNF6_HUMAN (Q9Y462) Zinc finger protein 6| Length = 771 Score = 30.0 bits (66), Expect = 5.1 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 228 PCNPCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTH 377 PC+ C + RG + RH + HP L R + C + + +S+H H Sbjct: 394 PCHICTKKFKSRGFLK-RHMKNHPDHLMRKKYQCTDCDFTTNKKVSFHNH 442
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +3 Query: 198 LPRPPEPISAPCNPCGAAIRPRGAPEIRHARPHPIL 305 LPRP EP P + A + AP RH R HP+L Sbjct: 371 LPRPSEPNCLPSSLPEATL----APSYRHRRSHPLL 402
>DEOB_STAAW (P63926) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = +3 Query: 237 PCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTHDTERPQVKISEAS 416 P A + G+ +RH N L ++G G++ + P+ E K+SEAS Sbjct: 22 PDAADFKDEGSHTLRHTLEGFDQTLPN-LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEAS 80 Query: 417 VRNATWSGAW 446 V T +G W Sbjct: 81 VGKDTMTGHW 90
>DEOB_STAAS (Q6GCY5) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = +3 Query: 237 PCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTHDTERPQVKISEAS 416 P A + G+ +RH N L ++G G++ + P+ E K+SEAS Sbjct: 22 PDAADFKDEGSHTLRHTLEGFDQTLPN-LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEAS 80 Query: 417 VRNATWSGAW 446 V T +G W Sbjct: 81 VGKDTMTGHW 90
>DEOB_STAAR (Q6GKG6) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = +3 Query: 237 PCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTHDTERPQVKISEAS 416 P A + G+ +RH N L ++G G++ + P+ E K+SEAS Sbjct: 22 PDAADFKDEGSHTLRHTLEGFDQTLPN-LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEAS 80 Query: 417 VRNATWSGAW 446 V T +G W Sbjct: 81 VGKDTMTGHW 90
>DEOB_STAAN (P99100) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = +3 Query: 237 PCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTHDTERPQVKISEAS 416 P A + G+ +RH N L ++G G++ + P+ E K+SEAS Sbjct: 22 PDAADFKDEGSHTLRHTLEGFDQTLPN-LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEAS 80 Query: 417 VRNATWSGAW 446 V T +G W Sbjct: 81 VGKDTMTGHW 90
>DEOB_STAAM (P63925) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = +3 Query: 237 PCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTHDTERPQVKISEAS 416 P A + G+ +RH N L ++G G++ + P+ E K+SEAS Sbjct: 22 PDAADFKDEGSHTLRHTLEGFDQTLPN-LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEAS 80 Query: 417 VRNATWSGAW 446 V T +G W Sbjct: 81 VGKDTMTGHW 90
>DEOB_STAAC (Q5HJM9) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 392 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = +3 Query: 237 PCGAAIRPRGAPEIRHARPHPILLSRNILRRVGCGSVSRQPLSWHTHDTERPQVKISEAS 416 P A + G+ +RH N L ++G G++ + P+ E K+SEAS Sbjct: 22 PDAADFKDEGSHTLRHTLEGFDQTLPN-LEKLGLGNIDKLPVVNAVEQPEAYYTKLSEAS 80 Query: 417 VRNATWSGAW 446 V T +G W Sbjct: 81 VGKDTMTGHW 90
>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)| (Strand-exchange protein 1 homolog) (Protein Dhm2) Length = 1719 Score = 29.6 bits (65), Expect = 6.7 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -2 Query: 417 QMPPISSPVASLYHVCAMKGV 355 QMPP+S+PV L +C++ G+ Sbjct: 1463 QMPPVSTPVTELSRICSLVGM 1483
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/50 (44%), Positives = 27/50 (54%) Frame = -1 Query: 349 LTEPHPTLRSIFLLNRIGCGRAWRISGAPRGRMAAPHGLQGAEIGSGGLG 200 LT P PT +I LLN +G A +I+ A GL GA +GS GLG Sbjct: 1800 LTSPLPTSTTI-LLNIMGGWLASQIAPAAGATGFVVSGLVGAAVGSIGLG 1848 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,855,561 Number of Sequences: 219361 Number of extensions: 2131186 Number of successful extensions: 6612 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6601 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
