>MIER1_CHICK (Q5ZKT9) Mesoderm induction early response protein 1 (Mi-er1)|
          Length = 513

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 292 PPKSTNSNVHSSDAEPDETDTAESNNLDPNGP 197
           PP ++NS+   S+ E   T ++  N L  NGP
Sbjct: 381 PPTASNSSTSQSEREDSTTSSSNQNGLSANGP 412

>LIN2_CAEEL (P54936) Protein lin-2 (Abnormal cell lineage protein 2)|
          Length = 961

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 28  LVERGLF*NGSRILHGPDT*P*PTRHSILRPLDWQV*RNH*GLTLQTIIQGLK 186
           ++E+G F N  RILHGP       R  +LR ++  + R H GL  + I + ++
Sbjct: 22  VIEQGPFSNVYRILHGPS-----NRKFLLRSINLNLFRQHTGLGFEEIDEEIR 69

>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -2

Query: 352 NL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILE 173
           NL T  + L +A+ T  L +   S N    +++        A ++     G    F++  
Sbjct: 303 NLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGS 362

Query: 172 LWSVRSSLNGFFIPASPMASK*SALL 95
           L +  ++ NG+F  ASP+A+  SA+L
Sbjct: 363 LAAATAATNGYFGAASPLAA--SAIL 386

>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -2

Query: 352 NL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILE 173
           NL T  + L +A+ T  L +   S N    +++        A ++     G    F++  
Sbjct: 314 NLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGS 373

Query: 172 LWSVRSSLNGFFIPASPMASK*SALL 95
           L +  ++ NG+F  ASP+A+  SA+L
Sbjct: 374 LAAATAATNGYFGAASPLAA--SAIL 397

>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -2

Query: 352 NL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILE 173
           NL T  + L +A+ T  L +   S N    +++        A ++     G    F++  
Sbjct: 331 NLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGS 390

Query: 172 LWSVRSSLNGFFIPASPMASK*SALL 95
           L +  ++ NG+F  ASP+A+  SA+L
Sbjct: 391 LAAATAATNGYFGAASPLAA--SAIL 414

>P72_MYCMS (P55801) Immunodominant protein p72 precursor|
          Length = 532

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = -2

Query: 376 SLGPYSRMNL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDP 206
           S+ P S ++  + +    + S+  + +  P+  N N   + ++PDE+   ++NN +P
Sbjct: 10  SILPISSISFLSVVSCSTRNSNAKQPDKKPEKPNENTPKTPSKPDESKQPDNNNTNP 66

>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)|
          Length = 3053

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -2

Query: 340  EIISLMKASHTSRLNSPPKSTNSNVHSSDAE-PDETDTAESNNLDPNGPTFAFSILELW- 167
            E+ S +K   T   N   K T+    SS A+ P  +DT    N D  GP   +   +L  
Sbjct: 2009 EMKSGLKDFKTFLTNDQVKVTDEENASSGADAPSASDTTAKQNPDNTGPALEWDNYDLRE 2068

Query: 166  -SVRSSLNGFFIPASPMAS 113
             ++  S++   + ASP+AS
Sbjct: 2069 DALDDSVSSSSVHASPLAS 2087

>MIER1_HUMAN (Q8N108) Mesoderm induction early response protein 1 (Mi-er1)|
           (hmi-er1) (Early response 1) (Er1)
          Length = 536

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 292 PPKSTNSNVHSSDAEPDETDTAESNNLDPNGP 197
           PP ++NS+   S+ E     TA  N +  NGP
Sbjct: 403 PPTASNSSNSQSEKEDGTVSTANQNGVSSNGP 434

>DPB3_DEBHA (Q6BX14) DNA polymerase epsilon subunit C (EC 2.7.7.7) (DNA|
           polymerase II subunit C)
          Length = 277

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -2

Query: 379 SSLGPYSRMNL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPN 203
           SS  P S +N  +++ +++  S+ +   +PP  +N+N    + E +E +  + N + PN
Sbjct: 2   SSPMPQSSLNN-SQVANMIDESNETPSTTPPMISNTNTPVPEIEMEEPNAPQDNTVAPN 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,198,346
Number of Sequences: 219361
Number of extensions: 1528904
Number of successful extensions: 4275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4273
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)