Clone Information

BLAST Search Result

Clone Name	baal3p17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.2...	103	1e-22
2	FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.2...	101	7e-22
3	FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.2...	90	2e-18
4	FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.2...	83	3e-16
5	FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3....	71	1e-12
6	FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.2...	56	5e-08
7	FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor...	38	0.010
8	FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloropl...	38	0.013
9	FTSH_POPEU (P84578) Cell division protein ftsH homolog, chloropl...	35	0.065
10	FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chlor...	33	0.25
11	FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloropl...	33	0.25
12	SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 pre...	32	0.93
13	FTSH2_SYNY3 (P73179) Cell division protein ftsH homolog 2 (EC 3....	31	1.2
14	PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacema...	30	2.1
15	MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embr...	30	2.1
16	MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha iso...	30	2.7
17	MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha iso...	30	2.7
18	SYL_CHLMU (Q9PKI4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...	30	2.7
19	MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, em...	30	2.7
20	MYB2_PHYPA (P80073) Myb-related protein Pp2	30	2.7
21	YB3_XENLA (Q00436) B box-binding protein (Protein YB3)	30	3.5
22	DNAJ1_CORDI (Q6NG14) Chaperone protein dnaJ 1	29	4.6
23	YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1 ...	29	4.6
24	YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein ...	29	4.6
25	YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein ...	29	4.6
26	SYL_CHLTR (O84211) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...	29	4.6
27	YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein ...	29	4.6
28	YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein ...	29	4.6
29	YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein ...	29	4.6
30	Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase ...	29	6.0
31	PT1_BACST (P42014) Phosphoenolpyruvate-protein phosphotransferas...	29	6.0
32	MYH6_MESAU (P13539) Myosin heavy chain, cardiac muscle alpha iso...	29	6.0
33	MYB86_ARATH (Q8LPH6) Transcription factor MYB86 (Myb-related pro...	29	6.0
34	MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isof...	29	6.0
35	UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial pre...	29	6.0
36	ATPA_CLOAB (Q9Z689) ATP synthase alpha chain (EC 3.6.3.14) (ATP ...	29	6.0
37	KIF1A_MOUSE (P33173) Kinesin-like protein KIF1A (Axonal transpor...	28	7.9
38	SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2...	28	7.9
39	COTE1_HUMAN (P81408) COTE1 protein	28	7.9
40	MYH4_MOUSE (Q5SX39) Myosin-4 (Myosin heavy chain, skeletal muscl...	28	7.9
41	MYH8_MOUSE (P13542) Myosin-8 (Myosin heavy chain, skeletal muscl...	28	7.9
42	ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoce...	28	7.9

>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 628

 Score =  103 bits (258), Expect = 1e-22
 Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 8/99 (8%)
 Frame = +2

Query: 104 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELL 283
           ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+
Sbjct: 38  IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELI 97

Query: 284 QKLREKNIDFAAHNQQEDS------GNLLFNLI--GNLA 376
            KLR+ N+D  AH  +  S      GNLLF LI  G LA
Sbjct: 98  TKLRKANVDLDAHPPKSTSAVWGLLGNLLFPLILVGGLA 136

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>FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 631

 Score =  101 bits (252), Expect = 7e-22
 Identities = 51/92 (55%), Positives = 68/92 (73%)
 Frame = +2

Query: 98  QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQE 277
           + ++SSRM+Y RFLEYLD   VKKVDL++ G  AIVEAI PELGNR+QR+RV+LP  + E
Sbjct: 36  KNIASSRMTYGRFLEYLDLGWVKKVDLYDEGHTAIVEAIGPELGNRIQRIRVELPATAPE 95

Query: 278 LLQKLREKNIDFAAHNQQEDSGNLLFNLIGNL 373
           L+ KLR+ N+D  AH   + +    ++LIGNL
Sbjct: 96  LITKLRKANVDLDAHATNDSTP--AWSLIGNL 125

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>FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 644

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 45/90 (50%), Positives = 65/90 (72%)
 Frame = +2

Query: 104 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELL 283
           V SS+M+Y RFLEYL+   V +VDL++N   AIV+A SPELGNR Q +RV++P  + +L+
Sbjct: 50  VISSKMTYGRFLEYLEMGWVNQVDLYDNSRNAIVQASSPELGNRPQTIRVEIPVGASQLI 109

Query: 284 QKLREKNIDFAAHNQQEDSGNLLFNLIGNL 373
           QKL+E NIDF AH  ++   N+  N++ N+
Sbjct: 110 QKLKEYNIDFDAHPAEQK--NIFVNILSNI 137

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>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 614

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 41/72 (56%), Positives = 53/72 (73%)
 Frame = +2

Query: 107 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQ 286
           SSSRM+Y RFLEY+D + VKKVDL++N   AIV+ I+P++    Q VRV+LP  S EL+ 
Sbjct: 37  SSSRMTYGRFLEYIDMNWVKKVDLYDNARTAIVDIINPDIKGEEQLVRVELPTFSSELVS 96

Query: 287 KLREKNIDFAAH 322
           KL+ K IDF AH
Sbjct: 97  KLKNKLIDFDAH 108

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>FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3.4.24.-)|
          Length = 627

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 37/89 (41%), Positives = 58/89 (65%)
 Frame = +2

Query: 107 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQ 286
           +++RM+Y RFLEY+D  R+  VDL+ENG  AIV+   PE+ +R  R RV LP  + EL+ 
Sbjct: 39  ANTRMTYGRFLEYVDAGRITSVDLYENGRTAIVQVSDPEV-DRTLRSRVDLPTNAPELIA 97

Query: 287 KLREKNIDFAAHNQQEDSGNLLFNLIGNL 373
           +LR+ NI   +H  +  +  +++  +GNL
Sbjct: 98  RLRDSNIRLDSHPVR--NNGMVWGFVGNL 124

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>FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP)|
          Length = 603

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 31/79 (39%), Positives = 49/79 (62%)
 Frame = +2

Query: 86  LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPG 265
           LA+   V++SRM+Y R LEY+    VK++D+++    A++EA SPE G   Q +RV LP 
Sbjct: 22  LANQMPVATSRMTYGRLLEYMQMGWVKRIDVYDR--TALIEASSPETG--WQWIRVDLPA 77

Query: 266 LSQELLQKLREKNIDFAAH 322
            S + L++ +  +ID   H
Sbjct: 78  NSSDWLEQAKTLHIDVDVH 96

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>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 28/87 (32%), Positives = 47/87 (54%)
 Frame = +2

Query: 113 SRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKL 292
           S+  YS FL  + K +V++V   ++G++  + A+     NR  R  V +P    +L+  L
Sbjct: 132 SQWRYSEFLNAVKKGKVERVRFSKDGSVVQLTAVD----NR--RASVIVPN-DPDLIDIL 184

Query: 293 REKNIDFAAHNQQEDSGNLLFNLIGNL 373
               +D +  ++ E SGN LF +IGNL
Sbjct: 185 AMNGVDISV-SEGESSGNDLFTVIGNL 210

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>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (DS9)
          Length = 714

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 26/87 (29%), Positives = 46/87 (52%)
 Frame = +2

Query: 113 SRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKL 292
           S+  YS FL  + K +V++V   ++G+   + A+        +R  V +P    +L+  L
Sbjct: 125 SQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDG------RRATVTVPN-DPDLIDIL 177

Query: 293 REKNIDFAAHNQQEDSGNLLFNLIGNL 373
               +D +  ++ + +GN LFNLIGNL
Sbjct: 178 AMNGVDISV-SEGDSAGNGLFNLIGNL 203

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>FTSH_POPEU (P84578) Cell division protein ftsH homolog, chloroplast (EC|
           3.4.24.-) (Fragments)
          Length = 47

 Score = 35.4 bits (80), Expect = 0.065
 Identities = 24/52 (46%), Positives = 24/52 (46%)
 Frame = +2

Query: 134 FLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK 289
           FLEYLDKDRV                            RVQLPGLSQELLQK
Sbjct: 1   FLEYLDKDRV----------------------------RVQLPGLSQELLQK 24

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>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 704

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 25/83 (30%), Positives = 43/83 (51%)
 Frame = +2

Query: 125 YSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKN 304
           YS FL  + K +V++V   ++G++  + A+     NR  R  V +P    +L+  L    
Sbjct: 126 YSEFLNAVKKGKVERVKFSKDGSVLQLTAVD----NR--RATVIVPN-DPDLIDILAMNG 178

Query: 305 IDFAAHNQQEDSGNLLFNLIGNL 373
           +D +    + + GN LF+ IGNL
Sbjct: 179 VDISV--SEGEGGNGLFDFIGNL 199

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>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (Fragment)
          Length = 662

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 24/88 (27%), Positives = 45/88 (51%)
 Frame = +2

Query: 110 SSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK 289
           S++  YS FL  + K +V++V   ++G+   + A+        +R  V +P    +L+  
Sbjct: 101 STQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDG------RRANVIVPN-DPDLIDI 153

Query: 290 LREKNIDFAAHNQQEDSGNLLFNLIGNL 373
           L    +D +    + + GN LF++IGNL
Sbjct: 154 LAMNGVDISV--SEGEGGNGLFSVIGNL 179

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>SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 precursor|
          Length = 1159

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 97  PGRLFLQDVLLQVPRVPRQGQGEEGRPV*ERDHCYRGGHLSRAR--QPRAEGPCAASRPQ 270
           PGRL     L +VPR P  G+ E G           GG   +AR  +P A GP     P 
Sbjct: 55  PGRLGPHAQLTRVPRSPPAGRAEPG-----------GGEDRQARGTEPGAPGPSPGPAPG 103

Query: 271 PG 276
           PG
Sbjct: 104 PG 105

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>FTSH2_SYNY3 (P73179) Cell division protein ftsH homolog 2 (EC 3.4.24.-)|
          Length = 665

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = +2

Query: 116 RMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLR 295
           +M+Y + ++ +  ++V KV++  N   AIV       G++ Q   VQL   + ELL  LR
Sbjct: 83  KMNYGQLIDAIKANQVAKVEVDTNRRQAIVTLKDAPPGSKPQ--TVQLLDNNPELLNLLR 140

Query: 296 EKNIDFAAHNQQEDSGNLLFNLIGNL 373
            ++        +    + L+ L+ NL
Sbjct: 141 SRSETIDLDINRTPDNSALYGLLTNL 166

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>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (hPER)
          Length = 1290

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +1

Query: 175 PV*ERDHCYRGGHLSRARQ-PRAEGPCAASRPQP 273
           P   R HC      SR  Q PRAE PC  S P P
Sbjct: 828 PPSRRHHCRSKAKRSRHHQNPRAEAPCYVSHPSP 861

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>MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
 Frame = +2

Query: 92   DDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLS 271
            D++ +++   +  R LE    +  K +D  E  T+A VE       N+V+ +  +L GL 
Sbjct: 929  DEEEINAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEELAGLD 987

Query: 272  QELLQKLREKNIDFAAHNQ-------QEDSGNLLFNLIGNL 373
            + + +  REK     AH Q       +ED  N L  L   L
Sbjct: 988  ETIAKLTREKKALQEAHQQTLDDLQAEEDKVNSLSKLKSKL 1028

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>MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1939

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/87 (26%), Positives = 42/87 (48%)
 Frame = +2

Query: 77   NKALADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 256
            N+ L D++ +++   +  R LE    +  K +D  E  T+A VE       N+V+ +  +
Sbjct: 925  NERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEE 983

Query: 257  LPGLSQELLQKLREKNIDFAAHNQQED 337
            + GL + + +  +EK     AH Q  D
Sbjct: 984  MAGLDEIIAKLTKEKKALQEAHQQALD 1010

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>MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha isoform|
           (MyHC-alpha) (Alpha isomyosin) (Fragment)
          Length = 465

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/87 (26%), Positives = 42/87 (48%)
 Frame = +2

Query: 77  NKALADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 256
           N+ L D++ +++   +  R LE    +  K +D  E  T+A VE       N+V+ +  +
Sbjct: 120 NERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEE 178

Query: 257 LPGLSQELLQKLREKNIDFAAHNQQED 337
           + GL + + +  +EK     AH Q  D
Sbjct: 179 MAGLDEIIAKLTKEKKALQEAHQQALD 205

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>SYL_CHLMU (Q9PKI4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 819

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 86  LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIA--IVEAISPEL 226
           L  +QGV+  R   +RF E     RVK  D+FE  ++A  +V+ ++ ++
Sbjct: 638 LWSNQGVAGCRRFLNRFYEMATSSRVKDEDIFEGMSLAHKLVQRVTDDI 686

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>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, embryonic (Muscle|
            embryonic myosin heavy chain) (SMHCE)
          Length = 1940

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = +2

Query: 92   DDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLS 271
            D++ +++   +  R LE    +  K +D  E  T+A VE       N+V+ +  +L GL 
Sbjct: 929  DEEEINAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEELSGLD 987

Query: 272  QELLQKLREKNIDFAAHNQQED 337
            + + +  REK     AH Q  D
Sbjct: 988  ETIAKLTREKKALQEAHQQALD 1009

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>MYB2_PHYPA (P80073) Myb-related protein Pp2|
          Length = 421

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
 Frame = +2

Query: 131 RFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQ---------ELL 283
           R+  YL  D   K  +F      ++  +   LGNR  R+  QLPG +           L 
Sbjct: 56  RWTNYLRPDL--KRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLK 113

Query: 284 QKLREKNIDFAAHNQQEDS 340
           ++LR + +D   H   EDS
Sbjct: 114 KRLRSQGLDPNTHLPLEDS 132

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>YB3_XENLA (Q00436) B box-binding protein (Protein YB3)|
          Length = 305

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGHLS------RARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 204 QGAGEQGRPV--RQNMYRGFRPQFRRGPPRQRQPREDG 239

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>DNAJ1_CORDI (Q6NG14) Chaperone protein dnaJ 1|
          Length = 375

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 227 GNRVQRVRVQLPGL----SQELLQKLREKNIDFAAHNQQEDSGNLLFNLIGN 370
           GN +  V V +P      S+ELL KLR+   D ++    +DS + LF  + N
Sbjct: 320 GNMIAHVDVSIPTQLDEKSKELLNKLRDHRSDESSVRTADDSDDSLFGRLRN 371

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>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 321

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 221 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 256

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>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 321

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 221 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 256

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>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box|
           binding protein 1) (Y-box transcription factor)
          Length = 321

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 221 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 256

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>SYL_CHLTR (O84211) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 819

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 86  LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIA 199
           L  +QGV+  R   +RF E +  DRVK+ + FE  ++A
Sbjct: 638 LWSNQGVAGCRRFLNRFYEMVSSDRVKEDNNFEGLSLA 675

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>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50)
          Length = 323

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 223 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 258

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>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 323

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 223 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 258

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>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 323

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 151 QGQGEEGRPV*ERDHCYRGGH------LSRARQPRAEG 246
           QG GE+GRPV  R + YRG          R RQPR +G
Sbjct: 223 QGAGEQGRPV--RQNMYRGYRPRFRRGPPRQRQPREDG 258

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>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 161 PCP-CRGTRGTWSKTSWRKRRPGHRR-GPC 78
           PC  CR   GT S  +WR  RP  RR G C
Sbjct: 2   PCTHCRTPNGTSSSATWRTARPAPRRCGSC 31

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>PT1_BACST (P42014) Phosphoenolpyruvate-protein phosphotransferase (EC|
           2.7.3.9) (Phosphotransferase system, enzyme I)
          Length = 578

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 182 ENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLRE-KNIDFAAHNQQEDSGNLL 352
           E  T+A VEA    L   V + + +L  + Q  L+KL E K   FAAH    D   LL
Sbjct: 35  EKRTVADVEAEIARLEAAVAKAKEELEAIKQHALEKLGEDKAAIFAAHLLVLDDPELL 92

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>MYH6_MESAU (P13539) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1939

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +2

Query: 86   LADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPG 265
            L D++ +++   S  R LE    +  K +D  E  T+A VE       N+V+ +  ++ G
Sbjct: 928  LEDEEEMNAELTSKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEEMAG 986

Query: 266  LSQELLQKLREKNIDFAAHNQQED 337
            L + + +  +EK     AH Q  D
Sbjct: 987  LDEIIAKLTKEKKALQEAHQQALD 1010

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>MYB86_ARATH (Q8LPH6) Transcription factor MYB86 (Myb-related protein 86)|
           (AtMYB86) (Myb homolog 4) (AtMyb4)
          Length = 352

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = +2

Query: 131 RFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQE---------LL 283
           R++ YL  D   K   F     +++  +   LGNR  ++  +LPG +           L 
Sbjct: 56  RWINYLRPDL--KRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLK 113

Query: 284 QKLREKNIDFAAH 322
           +KLR K ID   H
Sbjct: 114 KKLRRKGIDPTTH 126

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>MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = +2

Query: 77   NKALADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 256
            N+ L D++ +++   +  R LE    +  + +D  E  T+A VE       N+V+ +  +
Sbjct: 923  NERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL-TLAKVEKEKHATENKVKNLTEE 981

Query: 257  LPGLSQELLQKLREKNIDFAAHNQQED 337
            + GL + + +  +EK     AH Q  D
Sbjct: 982  MAGLDEIIAKLTKEKKALQEAHQQALD 1008

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>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor|
          Length = 257

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 116 RMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQE 277
           R +Y R+ EYLD         FE   + + + +  ELG ++  ++++  GL  E
Sbjct: 191 RTAYQRYAEYLDS--------FEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSE 236

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>ATPA_CLOAB (Q9Z689) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1|
           sector alpha subunit)
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 125 YSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKN 304
           Y+   EY+    V K+  FE+G    V+A   +LG ++   +     +S +L + + E  
Sbjct: 438 YAVVNEYVMDIDVSKLSAFESGLFEYVDAHYRDLGKQILEKKELTDDISSQLTKAINEYK 497

Query: 305 IDFAAHNQ 328
             F A  Q
Sbjct: 498 KIFLAEEQ 505

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>KIF1A_MOUSE (P33173) Kinesin-like protein KIF1A (Axonal transporter of synaptic|
           vesicles)
          Length = 1695

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 136 PRVPRQGQGEEGRPV*ERDHCYRGGHLSRARQPRAEGPCAASRPQP 273
           P + R G     R +  + H +R  H  +ARQ R   PCA +  +P
Sbjct: 575 PSILRSGN----RIIMGKSHVFRFNHPEQARQERERTPCAETPAEP 616

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>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 1)
           (SR-protein-specific kinase 1) (SFRS protein kinase 1)
          Length = 826

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 111 EETPWSSARALLAVSKAGRPTPPSARXEEPPLRLA 7
           E  P   ARALL    A  PTP ++   +PP R A
Sbjct: 109 ETPPAHPARALLCAPWAASPTPAASPSPQPPPRQA 143

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>COTE1_HUMAN (P81408) COTE1 protein|
          Length = 669

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = -3

Query: 242 SARGCRARERWPP---------R*QWSRSQTGRPSSPCPCRGTRGTWSKTSWRKRRPGHR 90
           +AR C   E WPP         R +  R   GRP++  P R     +S +S     PGHR
Sbjct: 419 AARSCHRLEGWPPWVGPCFPELRRRVPRGG-GRPAAAPPTRAPTRRFSDSSGSLTPPGHR 477

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>MYH4_MOUSE (Q5SX39) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)|
          Length = 1939

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = +2

Query: 92   DDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLS 271
            D++ +++   +  R LE    +  K +D  E  T+A VE       N+V+ +  ++ GL 
Sbjct: 932  DEEEINAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEEMAGLD 990

Query: 272  QELLQKLREKNIDFAAHNQQED 337
            + + +  +EK     AH Q  D
Sbjct: 991  ENIAKLTKEKKALQEAHQQTLD 1012

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>MYH8_MOUSE (P13542) Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)|
            (MyHC-perinatal)
          Length = 1937

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = +2

Query: 92   DDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLS 271
            D++ +++   +  R LE    +  K +D  E  T+A VE       N+V+ +  ++ GL 
Sbjct: 931  DEEEINAELTAKKRKLEDECSELKKDIDDLEL-TLAKVEKEKHATENKVKNLTEEMAGLD 989

Query: 272  QELLQKLREKNIDFAAHNQQED 337
            + + +  +EK     AH Q  D
Sbjct: 990  ENIAKLTKEKKALQEAHQQTLD 1011

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>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 474

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 202 RGGHLSRARQPRAEGPCAASRPQPGASPEA*GEE 303
           RGGH +   +PRA G    +RP P  SP A  +E
Sbjct: 395 RGGHAAAGDRPRASGCLPGTRPPP--SPGAASDE 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,966,294
Number of Sequences: 219361
Number of extensions: 1146047
Number of successful extensions: 4956
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 4684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4950
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result