ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105892.1| Zea mays PCO103778 mRNA sequence 238 1e-59
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
3dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
4dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
5dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
6dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
7gb|AF117339.1|AF117339 Nicotiana tabacum FtsH-like protein Pftf ... 56 1e-04
8dbj|AB236793.1| Trifolium pratense RNA for putative zinc depende... 54 4e-04
9dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
10dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
11ref|NM_100523.3| Arabidopsis thaliana FTSH8; ATP-dependent pepti... 46 0.098
12gb|AF419565.1|AF419565 Arabidopsis thaliana At1g06430/F12K11_24 ... 46 0.098
13gb|AC068143.4|T2D23 Sequence of BAC T2D23 from Arabidopsis thali... 46 0.098
14gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana... 46 0.098
15gb|BT003813.1| Arabidopsis thaliana clone C104937 putative FtsH ... 46 0.098
16gb|BT002649.1| Arabidopsis thaliana At1g06430/F12K11_24 gene, co... 46 0.098
17gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of ... 44 0.39
18ref|NM_179825.1| Arabidopsis thaliana VAR2 (VARIEGATED 2); ATP-d... 42 1.5
19gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 1.5
20ref|XM_742528.1| Aspergillus fumigatus Af293 elongation factor 1... 42 1.5
21ref|XM_388663.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 42 1.5
22gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map ... 42 1.5
23gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.5
24gb|AF135189.1|AF135189 Arabidopsis thaliana zinc dependent prote... 42 1.5
25gb|AC160982.5| Mus musculus BAC clone RP23-351J19 from chromosom... 40 6.0
26gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromoso... 40 6.0
27gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 6.0
28gb|AE009052.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 6.0
29emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.0
30emb|AL359960.23| Human DNA sequence from clone RP11-298K24 on ch... 40 6.0
31gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswel... 40 6.0
32emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 40 6.0
33gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswel... 40 6.0
34gb|AE012367.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.0
35gb|AC025419.42| Homo sapiens 12 BAC RP11-230G5 (Roswell Park Can... 40 6.0
36gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 6.0
37dbj|AK136471.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 6.0
38gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.0
39gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.0
40gb|AC062033.2| Homo sapiens BAC clone RP11-544E11 from 2, comple... 40 6.0
41gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, compl... 40 6.0
42dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 6.0
43ref|NM_208743.1| Eremothecium gossypii ACL014Cp (ACL014C), mRNA 40 6.0
44emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.0
45gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 ... 40 6.0
46gb|AC132137.3| Mus musculus BAC clone RP23-153E2 from 3, complet... 40 6.0
47emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus co... 40 6.0
48dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.0
49gb|K00691.1|MUSIGCX mouse ig germline alpha membrane exons region 40 6.0 
>gb|AY105892.1| Zea mays PCO103778 mRNA sequence
          Length = 2203

 Score =  238 bits (120), Expect = 1e-59
 Identities = 267/316 (84%)
 Strand = Plus / Plus

                                                                       
Query: 105 tctcttcctccaggatgtcttactccaggttcctcgagtacctcgacaaggacagggtga 164
           |||| ||||| ||||||||||| || |||||||| ||||| || |||||||  || ||||
Sbjct: 131 tctcgtcctcgaggatgtcttattcaaggttccttgagtatcttgacaagggtagagtga 190

                                                                       
Query: 165 agaaggtcgacctgtttgagaacgggaccattgctatcgtggaggccatctctcccgagc 224
           ||||||| ||  | |||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct: 191 agaaggttgatttatttgagaatgggacaattgctatcgtggaggccatttctcctgagc 250

                                                                       
Query: 225 tcggcaaccgcgtgcagagggtccgtgtgcagcttcccggcctcagccaggagcttctcc 284
           | ||||||||||||||||| ||||||||||||||||| || || |||||||||||||| |
Sbjct: 251 ttggcaaccgcgtgcagagagtccgtgtgcagcttcctggtctaagccaggagcttcttc 310

                                                                       
Query: 285 agaagcttagggagaagaacattgactttgctgcgcacaaccagcaggaggactccggta 344
           ||||| | ||||| |||||||| || |||||||| |||| | | ||||||||||| ||| 
Sbjct: 311 agaagttgagggaaaagaacatcgattttgctgctcacagcaaccaggaggactctggtt 370

                                                                       
Query: 345 atctcctcttcaaccttatcgggaacttggccttcccgcttatccttatcggcggtctgt 404
            ||| || ||||||||||| || || ||||| ||||| ||||| |||||||| ||||| |
Sbjct: 371 ctcttctgttcaaccttattggaaatttggcattcccacttattcttatcggtggtctat 430

                           
Query: 405 tcttgctgtcgagaag 420
           | || ||||| |||||
Sbjct: 431 ttttactgtcaagaag 446
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  230 bits (116), Expect = 3e-57
 Identities = 257/304 (84%)
 Strand = Plus / Minus

                                                                            
Query: 119      atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
                ||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||  ||
Sbjct: 27343571 atgtcttactcgaggttccttgagtatctagacaaggacagagtgaagaaggttgatttg 27343512

                                                                            
Query: 179      tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
                |||||||| || || ||||| || || ||||| || ||||| |||||||||||||| |||
Sbjct: 27343511 tttgagaatggcacgattgccattgtagaggctatttctcctgagctcggcaaccgtgtg 27343452

                                                                            
Query: 239      cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaagcttagggag 298
                ||||| || |||||||||||||| || || ||||||||||||||||||||| | ||||| 
Sbjct: 27343451 cagagagttcgtgtgcagcttcctggtctaagccaggagcttctccagaagttgagggaa 27343392

                                                                            
Query: 299      aagaacattgactttgctgcgcacaaccagcaggaggactccggtaatctcctcttcaac 358
                ||||| || || |||||||| |||| | | ||||||||||| |||  ||| || ||||||
Sbjct: 27343391 aagaatatcgattttgctgcacacagcaaccaggaggactctggttctcttctgttcaac 27343332

                                                                            
Query: 359      cttatcgggaacttggccttcccgcttatccttatcggcggtctgttcttgctgtcgaga 418
                || ||||| |||||||| ||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 27343331 ctgatcggaaacttggctttcccacttatccttattggtggtctatttttgctgtcaaga 27343272

                    
Query: 419      agag 422
                ||||
Sbjct: 27343271 agag 27343268



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                    
Query: 115     caggatgtcttactccaggttcctcgagtacctcgac 151
               ||||||||| |||||| ||||||| ||||||||||||
Sbjct: 6714988 caggatgtcctactcccggttcctggagtacctcgac 6714952
to top
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score =  230 bits (116), Expect = 3e-57
 Identities = 257/304 (84%)
 Strand = Plus / Minus

                                                                         
Query: 119   atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
             ||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||  ||
Sbjct: 86398 atgtcttactcgaggttccttgagtatctagacaaggacagagtgaagaaggttgatttg 86339

                                                                         
Query: 179   tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
             |||||||| || || ||||| || || ||||| || ||||| |||||||||||||| |||
Sbjct: 86338 tttgagaatggcacgattgccattgtagaggctatttctcctgagctcggcaaccgtgtg 86279

                                                                         
Query: 239   cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaagcttagggag 298
             ||||| || |||||||||||||| || || ||||||||||||||||||||| | ||||| 
Sbjct: 86278 cagagagttcgtgtgcagcttcctggtctaagccaggagcttctccagaagttgagggaa 86219

                                                                         
Query: 299   aagaacattgactttgctgcgcacaaccagcaggaggactccggtaatctcctcttcaac 358
             ||||| || || |||||||| |||| | | ||||||||||| |||  ||| || ||||||
Sbjct: 86218 aagaatatcgattttgctgcacacagcaaccaggaggactctggttctcttctgttcaac 86159

                                                                         
Query: 359   cttatcgggaacttggccttcccgcttatccttatcggcggtctgttcttgctgtcgaga 418
             || ||||| |||||||| ||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 86158 ctgatcggaaacttggctttcccacttatccttattggtggtctatttttgctgtcaaga 86099

                 
Query: 419   agag 422
             ||||
Sbjct: 86098 agag 86095
to top
>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full
           insert sequence
          Length = 2276

 Score =  230 bits (116), Expect = 3e-57
 Identities = 257/304 (84%)
 Strand = Plus / Plus

                                                                       
Query: 119 atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
           ||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||  ||
Sbjct: 301 atgtcttactcgaggttccttgagtatctagacaaggacagagtgaagaaggttgatttg 360

                                                                       
Query: 179 tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
           |||||||| || || ||||| || || ||||| || ||||| |||||||||||||| |||
Sbjct: 361 tttgagaatggcacgattgccattgtagaggctatttctcctgagctcggcaaccgtgtg 420

                                                                       
Query: 239 cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaagcttagggag 298
           ||||| || |||||||||||||| || || ||||||||||||||||||||| | ||||| 
Sbjct: 421 cagagagttcgtgtgcagcttcctggtctaagccaggagcttctccagaagttgagggaa 480

                                                                       
Query: 299 aagaacattgactttgctgcgcacaaccagcaggaggactccggtaatctcctcttcaac 358
           ||||| || || |||||||| |||| | | ||||||||||| |||  ||| || ||||||
Sbjct: 481 aagaatatcgattttgctgcacacagcaaccaggaggactctggttctcttctgttcaac 540

                                                                       
Query: 359 cttatcgggaacttggccttcccgcttatccttatcggcggtctgttcttgctgtcgaga 418
           || ||||| |||||||| ||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 541 ctgatcggaaacttggctttcccacttatccttattggtggtctatttttgctgtcaaga 600

               
Query: 419 agag 422
           ||||
Sbjct: 601 agag 604
to top
>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full
           insert sequence
          Length = 2433

 Score =  222 bits (112), Expect = 8e-55
 Identities = 257/304 (84%), Gaps = 1/304 (0%)
 Strand = Plus / Plus

                                                                       
Query: 119 atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
           ||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||  ||
Sbjct: 492 atgtcttactcgaggttccttgagtatctagacaaggacagagtgaagaaggttgatttg 551

                                                                       
Query: 179 tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
           |||||||| || || ||||| || || ||||| || ||||| |||||||||||||| |||
Sbjct: 552 tttgagaatggcacgattgccattgtagaggctatttctcctgagctcggcaaccgtgtg 611

                                                                       
Query: 239 cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaagcttagggag 298
           ||||| || |||||||||||||| || || ||||||||||||||||||||| | ||||| 
Sbjct: 612 cagagagttcgtgtgcagcttcctggtctaagccaggagcttctccagaagttgagggaa 671

                                                                       
Query: 299 aagaacattgactttgctgcgcacaaccagcaggaggactccggtaatctcctcttcaac 358
           ||||| || || |||||||| |||| | | ||||||||||| |||  ||| || ||||||
Sbjct: 672 aagaatatcgattttgctgcacacagcaaccaggaggactctggttctct-ctgttcaac 730

                                                                       
Query: 359 cttatcgggaacttggccttcccgcttatccttatcggcggtctgttcttgctgtcgaga 418
           || ||||| |||||||| ||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 731 ctgatcggaaacttggctttcccacttatccttattggtggtctatttttgctgtcaaga 790

               
Query: 419 agag 422
           ||||
Sbjct: 791 agag 794
to top
>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full
           insert sequence
          Length = 2183

 Score =  204 bits (103), Expect = 2e-49
 Identities = 238/283 (84%)
 Strand = Plus / Plus

                                                                       
Query: 140 gagtacctcgacaaggacagggtgaagaaggtcgacctgtttgagaacgggaccattgct 199
           ||||| || ||||||||||| ||||||||||| ||  |||||||||| || || ||||| 
Sbjct: 262 gagtatctagacaaggacagagtgaagaaggttgatttgtttgagaatggcacgattgcc 321

                                                                       
Query: 200 atcgtggaggccatctctcccgagctcggcaaccgcgtgcagagggtccgtgtgcagctt 259
           || || ||||| || ||||| |||||||||||||| |||||||| || ||||||||||||
Sbjct: 322 attgtagaggctatttctcctgagctcggcaaccgtgtgcagagagttcgtgtgcagctt 381

                                                                       
Query: 260 cccggcctcagccaggagcttctccagaagcttagggagaagaacattgactttgctgcg 319
           || || || ||||||||||||||||||||| | ||||| ||||| || || |||||||| 
Sbjct: 382 cctggtctaagccaggagcttctccagaagttgagggaaaagaatatcgattttgctgca 441

                                                                       
Query: 320 cacaaccagcaggaggactccggtaatctcctcttcaaccttatcgggaacttggccttc 379
           |||| | | ||||||||||| |||  ||| || |||||||| ||||| |||||||| |||
Sbjct: 442 cacagcaaccaggaggactctggttctcttctgttcaacctgatcggaaacttggctttc 501

                                                      
Query: 380 ccgcttatccttatcggcggtctgttcttgctgtcgagaagag 422
           || ||||||||||| || ||||| || |||||||| |||||||
Sbjct: 502 ccacttatccttattggtggtctatttttgctgtcaagaagag 544
to top
>gb|AF117339.1|AF117339 Nicotiana tabacum FtsH-like protein Pftf precursor (Pftf) mRNA,
           nuclear gene encoding chloroplast protein, complete cds
          Length = 2346

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 118/148 (79%)
 Strand = Plus / Plus

                                                                       
Query: 177 tgtttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcg 236
           ||||||| ||||| ||||| ||||| || ||||| || ||||| ||  | || ||||| |
Sbjct: 422 tgtttgaaaacggaaccatagctattgttgaggctatatctccagaattaggaaaccggg 481

                                                                       
Query: 237 tgcagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaagcttaggg 296
           | |||||||| || || || || || || ||||||||||| || || |||||| |  | |
Sbjct: 482 ttcagagggttcgggtacaactacctgggctcagccaggaactccttcagaagttgcgag 541

                                       
Query: 297 agaagaacattgactttgctgcgcacaa 324
           | |||||||||||||||||||| |||||
Sbjct: 542 aaaagaacattgactttgctgctcacaa 569
to top
>dbj|AB236793.1| Trifolium pratense RNA for putative zinc dependent protease,
           complete cds, clone: C1867
          Length = 2414

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 269 agccaggagcttctccagaagcttagggagaagaacattgactttgc 315
           ||||| |||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 471 agccaagagcttcttcagaagttaagggaaaagaacattgactttgc 517
to top
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0425F05
          Length = 162858

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 115    caggatgtcttactccaggttcctcgagtacctcgac 151
              ||||||||| |||||| ||||||| ||||||||||||
Sbjct: 149114 caggatgtcctactcccggttcctggagtacctcgac 149078
to top
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0525F01
          Length = 151668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 115   caggatgtcttactccaggttcctcgagtacctcgac 151
             ||||||||| |||||| ||||||| ||||||||||||
Sbjct: 44667 caggatgtcctactcccggttcctggagtacctcgac 44631
to top
>ref|NM_100523.3| Arabidopsis thaliana FTSH8; ATP-dependent peptidase/ ATPase/
           metallopeptidase/ zinc ion binding AT1G06430 (FTSH8)
           mRNA, complete cds
          Length = 2251

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 134/171 (78%)
 Strand = Plus / Plus

                                                                       
Query: 119 atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
           |||||||| || |||||||| |||||  | |||||||  |||||  |||| || ||  ||
Sbjct: 290 atgtcttattctaggttcctagagtatttagacaagggaagggttgagaaagtagatttg 349

                                                                       
Query: 179 tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
           | |||||| ||||| || ||||| ||||||||| | ||||| ||| | || |||||  | 
Sbjct: 350 tatgagaatgggactatagctattgtggaggccgtttctcctgagttgggtaaccggatt 409

                                                              
Query: 239 cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaag 289
           ||| | || ||||||||||| || ||  | || ||||||||||||||||||
Sbjct: 410 cagcgtgtacgtgtgcagctacctggattgagtcaggagcttctccagaag 460
to top
>gb|AF419565.1|AF419565 Arabidopsis thaliana At1g06430/F12K11_24 mRNA, complete cds
          Length = 2228

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 134/171 (78%)
 Strand = Plus / Plus

                                                                       
Query: 119 atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
           |||||||| || |||||||| |||||  | |||||||  |||||  |||| || ||  ||
Sbjct: 290 atgtcttattctaggttcctagagtatttagacaagggaagggttgagaaagtagatttg 349

                                                                       
Query: 179 tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
           | |||||| ||||| || ||||| ||||||||| | ||||| ||| | || |||||  | 
Sbjct: 350 tatgagaatgggactatagctattgtggaggccgtttctcctgagttgggtaaccggatt 409

                                                              
Query: 239 cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaag 289
           ||| | || ||||||||||| || ||  | || ||||||||||||||||||
Sbjct: 410 cagcgtgtacgtgtgcagctacctggattgagtcaggagcttctccagaag 460
to top
>gb|AC068143.4|T2D23 Sequence of BAC T2D23 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 41039

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 134/171 (78%)
 Strand = Plus / Minus

                                                                         
Query: 119   atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
             |||||||| || |||||||| |||||  | |||||||  |||||  |||| || ||  ||
Sbjct: 40304 atgtcttattctaggttcctagagtatttagacaagggaagggttgagaaagtagatttg 40245

                                                                         
Query: 179   tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
             | |||||| ||||| || ||||| ||||||||| | ||||| ||| | || |||||  | 
Sbjct: 40244 tatgagaatgggactatagctattgtggaggccgtttctcctgagttgggtaaccggatt 40185

                                                                
Query: 239   cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaag 289
             ||| | || ||||||||||| || ||  | || ||||||||||||||||||
Sbjct: 40184 cagcgtgtacgtgtgcagctacctggattgagtcaggagcttctccagaag 40134
to top
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
             complete sequence
          Length = 93724

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 134/171 (78%)
 Strand = Plus / Plus

                                                                         
Query: 119   atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
             |||||||| || |||||||| |||||  | |||||||  |||||  |||| || ||  ||
Sbjct: 91737 atgtcttattctaggttcctagagtatttagacaagggaagggttgagaaagtagatttg 91796

                                                                         
Query: 179   tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
             | |||||| ||||| || ||||| ||||||||| | ||||| ||| | || |||||  | 
Sbjct: 91797 tatgagaatgggactatagctattgtggaggccgtttctcctgagttgggtaaccggatt 91856

                                                                
Query: 239   cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaag 289
             ||| | || ||||||||||| || ||  | || ||||||||||||||||||
Sbjct: 91857 cagcgtgtacgtgtgcagctacctggattgagtcaggagcttctccagaag 91907
to top
>gb|BT003813.1| Arabidopsis thaliana clone C104937 putative FtsH protease
           (At1g06430) mRNA, complete cds
          Length = 2089

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 134/171 (78%)
 Strand = Plus / Plus

                                                                       
Query: 119 atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
           |||||||| || |||||||| |||||  | |||||||  |||||  |||| || ||  ||
Sbjct: 253 atgtcttattctaggttcctagagtatttagacaagggaagggttgagaaagtagatttg 312

                                                                       
Query: 179 tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
           | |||||| ||||| || ||||| ||||||||| | ||||| ||| | || |||||  | 
Sbjct: 313 tatgagaatgggactatagctattgtggaggccgtttctcctgagttgggtaaccggatt 372

                                                              
Query: 239 cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaag 289
           ||| | || ||||||||||| || ||  | || ||||||||||||||||||
Sbjct: 373 cagcgtgtacgtgtgcagctacctggattgagtcaggagcttctccagaag 423
to top
>gb|BT002649.1| Arabidopsis thaliana At1g06430/F12K11_24 gene, complete cds
          Length = 2058

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 134/171 (78%)
 Strand = Plus / Plus

                                                                       
Query: 119 atgtcttactccaggttcctcgagtacctcgacaaggacagggtgaagaaggtcgacctg 178
           |||||||| || |||||||| |||||  | |||||||  |||||  |||| || ||  ||
Sbjct: 253 atgtcttattctaggttcctagagtatttagacaagggaagggttgagaaagtagatttg 312

                                                                       
Query: 179 tttgagaacgggaccattgctatcgtggaggccatctctcccgagctcggcaaccgcgtg 238
           | |||||| ||||| || ||||| ||||||||| | ||||| ||| | || |||||  | 
Sbjct: 313 tatgagaatgggactatagctattgtggaggccgtttctcctgagttgggtaaccggatt 372

                                                              
Query: 239 cagagggtccgtgtgcagcttcccggcctcagccaggagcttctccagaag 289
           ||| | || ||||||||||| || ||  | || ||||||||||||||||||
Sbjct: 373 cagcgtgtacgtgtgcagctacctggattgagtcaggagcttctccagaag 423
to top
>gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of the complete
           genome
          Length = 10091

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 51  tcggcctgcccgccttgctgac 72
           ||||||||||||||||||||||
Sbjct: 935 tcggcctgcccgccttgctgac 956
to top
>ref|NM_179825.1| Arabidopsis thaliana VAR2 (VARIEGATED 2); ATP-dependent peptidase/
           ATPase/ metallopeptidase/ zinc ion binding AT2G30950
           (VAR2) mRNA, complete cds
          Length = 2333

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 275 gagcttctccagaagcttagggagaagaacattgactttgc 315
           |||||||| |||||||||||||  ||||| ||||| |||||
Sbjct: 516 gagcttctacagaagcttagggctaagaatattgattttgc 556
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 100     gggcgtctcttcctccaggat 120
               |||||||||||||||||||||
Sbjct: 3137972 gggcgtctcttcctccaggat 3137992
to top
>ref|XM_742528.1| Aspergillus fumigatus Af293 elongation factor 1-gamma 2
           (Afu6g04570) partial mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 72  ctgccaacaaggccctcgccg 92
           |||||||||||||||||||||
Sbjct: 617 ctgccaacaaggccctcgccg 637
to top
>ref|XM_388663.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08487.1)
            partial mRNA
          Length = 5931

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 268  cagccaggagcttctccagaa 288
            |||||||||||||||||||||
Sbjct: 5704 cagccaggagcttctccagaa 5684
to top
>gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map m283, complete
             sequence
          Length = 89779

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 275   gagcttctccagaagcttagggagaagaacattgactttgc 315
             |||||||| |||||||||||||  ||||| ||||| |||||
Sbjct: 49579 gagcttctacagaagcttagggctaagaatattgattttgc 49619
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      cctcgccgatgaccagggcgt 105
               |||||||||||||||||||||
Sbjct: 3217878 cctcgccgatgaccagggcgt 3217858
to top
>gb|AF135189.1|AF135189 Arabidopsis thaliana zinc dependent protease (VAR2) mRNA, complete
           cds; nuclear gene for chloroplast product
          Length = 2271

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 275 gagcttctccagaagcttagggagaagaacattgactttgc 315
           |||||||| |||||||||||||  ||||| ||||| |||||
Sbjct: 484 gagcttctacagaagcttagggctaagaatattgattttgc 524
to top
>gb|AC160982.5| Mus musculus BAC clone RP23-351J19 from chromosome 12, complete sequence
          Length = 231693

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    ctcttcctccaggatgtctt 125
              ||||||||||||||||||||
Sbjct: 117782 ctcttcctccaggatgtctt 117801
to top
>gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromosome 17, complete sequence
          Length = 181509

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    tctggtggcatgggtggacc 447
              ||||||||||||||||||||
Sbjct: 178068 tctggtggcatgggtggacc 178087
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      acaaggccctcgccgatgac 97
               ||||||||||||||||||||
Sbjct: 2604292 acaaggccctcgccgatgac 2604311
to top
>gb|AE009052.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 78 of
            256 of the complete sequence
          Length = 10883

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  agctcggcaaccgcgtgcag 241
            ||||||||||||||||||||
Sbjct: 6827 agctcggcaaccgcgtgcag 6808
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     agctcggcaaccgcgtgcag 241
               ||||||||||||||||||||
Sbjct: 3277183 agctcggcaaccgcgtgcag 3277202
to top
>emb|AL359960.23| Human DNA sequence from clone RP11-298K24 on chromosome 10, complete
             sequence
          Length = 69113

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ggcgtctcttcctccaggat 120
             ||||||||||||||||||||
Sbjct: 51414 ggcgtctcttcctccaggat 51433
to top
>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 192399

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    accttatcgggaacttggcc 376
              ||||||||||||||||||||
Sbjct: 172099 accttatcgggaacttggcc 172080
to top
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
              complete sequence
          Length = 169168

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    agctcggcaaccgcgtgcag 241
              ||||||||||||||||||||
Sbjct: 127243 agctcggcaaccgcgtgcag 127262
to top
>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 177835

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   accttatcgggaacttggcc 376
             ||||||||||||||||||||
Sbjct: 89608 accttatcgggaacttggcc 89589
to top
>gb|AE012367.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 275
            of 460 of the complete genome
          Length = 11245

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  agctcggcaaccgcgtgcag 241
            ||||||||||||||||||||
Sbjct: 5688 agctcggcaaccgcgtgcag 5707
to top
>gb|AC025419.42| Homo sapiens 12 BAC RP11-230G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170331

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    agccaggagcttctccagaa 288
              ||||||||||||||||||||
Sbjct: 141417 agccaggagcttctccagaa 141436
to top
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    agctcggcaaccgcgtgcag 241
              ||||||||||||||||||||
Sbjct: 858758 agctcggcaaccgcgtgcag 858739
to top
>dbj|AK136471.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
            library, clone:9030611D02 product:immunoglobulin heavy
            chain (J558 family), full insert sequence
          Length = 2959

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  ctcttcctccaggatgtctt 125
            ||||||||||||||||||||
Sbjct: 1522 ctcttcctccaggatgtctt 1503
to top
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 168    aggtcgacctgtttgagaacggga 191
              |||||| |||||||||||||||||
Sbjct: 334732 aggtcgtcctgtttgagaacggga 334755
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     agctcggcaaccgcgtgcag 241
               ||||||||||||||||||||
Sbjct: 1877688 agctcggcaaccgcgtgcag 1877669
to top
>gb|AC062033.2| Homo sapiens BAC clone RP11-544E11 from 2, complete sequence
          Length = 208492

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aggacagggtgaagaaggtc 172
              ||||||||||||||||||||
Sbjct: 177280 aggacagggtgaagaaggtc 177299
to top
>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence
          Length = 197775

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    ggcgtctcttcctccaggatgtct 124
              |||||| |||||||||||||||||
Sbjct: 117487 ggcgtcacttcctccaggatgtct 117510
to top
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    ccaggagcttctccagaagc 290
              ||||||||||||||||||||
Sbjct: 426592 ccaggagcttctccagaagc 426611
to top
>ref|NM_208743.1| Eremothecium gossypii ACL014Cp (ACL014C), mRNA
          Length = 1575

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 168 aggtcgacctgtttgagaacggga 191
           |||||| |||||||||||||||||
Sbjct: 743 aggtcgtcctgtttgagaacggga 720
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     agctcggcaaccgcgtgcag 241
               ||||||||||||||||||||
Sbjct: 2371481 agctcggcaaccgcgtgcag 2371462
to top
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete
              sequence
          Length = 318699

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    accttatcgggaacttggcc 376
              ||||||||||||||||||||
Sbjct: 104255 accttatcgggaacttggcc 104236
to top
>gb|AC132137.3| Mus musculus BAC clone RP23-153E2 from 3, complete sequence
          Length = 196413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    gacaaggacagggtgaagaa 168
              ||||||||||||||||||||
Sbjct: 109367 gacaaggacagggtgaagaa 109386
to top
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
               variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     ctcttcctccaggatgtctt 125
               ||||||||||||||||||||
Sbjct: 1381355 ctcttcctccaggatgtctt 1381336
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      gccctcgccgatgaccaggg 102
               ||||||||||||||||||||
Sbjct: 2978607 gccctcgccgatgaccaggg 2978626
to top
>gb|K00691.1|MUSIGCX mouse ig germline alpha membrane exons region
          Length = 2124

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 ctcttcctccaggatgtctt 125
           ||||||||||||||||||||
Sbjct: 550 ctcttcctccaggatgtctt 531


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,239,599
Number of Sequences: 3902068
Number of extensions: 3239599
Number of successful extensions: 59743
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 59334
Number of HSP's gapped (non-prelim): 414
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top