ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal4c18 |
|---|---|
| Clone Library Name | barley_pub |
>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)| Length = 1687 Score = 29.3 bits (64), Expect = 2.3 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +2 Query: 326 DGDENAGRPDLACPYC 373 DGD +AG+P L CP+C Sbjct: 1414 DGDGDAGQPPLHCPFC 1429
>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 4) (ERK-4) Length = 583 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +3 Query: 204 IYLSTPAWTRSTGS---RAWPPPSGSTQRSSATPIG 302 ++L W +ST S RA PPP R SA+P G Sbjct: 485 LFLEIAQWVKSTQSGSERASPPPDAPEPRLSASPPG 520
>COAT_PAVL3 (P36310) Coat protein VP2| Length = 587 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 213 IDRWVGRI*GRLSHAPLLSRPRAR 142 I+RW+ G +++ PLLSRP AR Sbjct: 561 IERWLPTATGNITNVPLLSRPVAR 584
>DBP4_NEUCR (Q7RZ35) ATP-dependent RNA helicase dbp-4 (EC 3.6.1.-)| Length = 823 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 145 RAGSGEERRVREPALYSTYPSIYLRRHGLGALDLAPGRRQAV 270 R GSG+ P L Y + + GLGAL ++P R AV Sbjct: 102 RTGSGKTLAFLVPVLEKLYRARWTEYDGLGALIISPTRELAV 143
>DBP4_ASPFU (Q4WM60) ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)| Length = 787 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 145 RAGSGEERRVREPALYSTYPSIYLRRHGLGALDLAPGRRQAV 270 + GSG+ P L + Y + GLGAL L+P R A+ Sbjct: 92 KTGSGKTLAFLVPVLENLYRKQWAEHDGLGALILSPTRELAI 133
>ERD2_SCHPO (O94270) ER lumen protein retaining receptor| Length = 212 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = +2 Query: 158 ERSGACESRPYILPTHLSIYAGMDSEHWISRLAAAKRFYAAQLGHADRAGMDELDMDGD 334 +RSG ES + +Y G+ HWI R+A K+ +G A AG+ + + GD Sbjct: 139 QRSGETESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKV----IGVAILAGIIQTVLYGD 193
>TFG_HUMAN (Q92734) Protein TFG (TRK-fused gene protein)| Length = 400 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +3 Query: 207 YLSTPAWTRSTGSRAWPPPSG-STQRSSATPIGRGWT 314 Y P +T GS PPPSG + + P G+G+T Sbjct: 357 YQPRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYT 393
>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 992 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +3 Query: 216 TPAWTRSTGSRAWPPPSGSTQRSSATP 296 T AW R SRA PPP + S TP Sbjct: 65 TGAWQRKDWSRAPPPPEERQESRSQTP 91
>DBP4_ASPOR (Q2UHB7) ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)| Length = 796 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 145 RAGSGEERRVREPALYSTYPSIYLRRHGLGALDLAPGRRQAV 270 + GSG+ P L + Y + GLGAL L+P R A+ Sbjct: 90 KTGSGKTLAFLIPVLENLYRKQWSEHDGLGALILSPTRELAI 131
>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 955 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +2 Query: 23 PSVPYTSRSPTSDKADSDREKXXXXXXXXXXXXXVSHQLIRARGRERSGACESRP 187 PS S S SDK+ SDR + V ++ ++S + +SRP Sbjct: 135 PSPRSRSHSRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRP 189
>KGUA_CAMJE (Q9PNB8) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 207 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/50 (26%), Positives = 20/50 (40%) Frame = +2 Query: 155 RERSGACESRPYILPTHLSIYAGMDSEHWISRLAAAKRFYAAQLGHADRA 304 + R G Y +H G+DS+H++ + FY L H A Sbjct: 43 KPREGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNA 92
>PPT1_YEAST (P53043) Serine/threonine-protein phosphatase T (EC 3.1.3.16) (PPT)| Length = 513 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +2 Query: 263 KRFYAAQLGHADRAGMDELDMDGDENAGRPDLACPYCYEDH 385 K++ AA + HAD E M EN PD+ C + H Sbjct: 211 KKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTH 251
>TR150_RAT (Q5M7V8) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +2 Query: 23 PSVPYTSRSPTSDKADSDREKXXXXXXXXXXXXXVSHQLIRARGRERSGACESRP 187 PS S S SDK+ SDR + V ++ ++S + +SRP Sbjct: 135 PSPRSRSHSRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSTKEKKSSSKDSRP 189
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +2 Query: 23 PSVPYTSRSPTSDKADSDREKXXXXXXXXXXXXXVSHQLIRARGRERSGACESRP 187 PS S S SDK+ SDR + V ++ ++S + +SRP Sbjct: 135 PSPRSRSHSRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSTKEKKSSSKDSRP 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,688,172 Number of Sequences: 219361 Number of extensions: 569778 Number of successful extensions: 2308 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2308 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
