ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor 142 6e-34
2KGUA_THETN (Q8R9S6) Guanylate kinase (EC 2.7.4.8) (GMP kinase) 32 1.2
3Y2191_MYCTU (Q10384) Hypothetical protein Rv2191/MT2247 30 3.5
4K0562_MOUSE (Q80V31) Protein KIAA0562 29 7.8

>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score =  142 bits (357), Expect = 6e-34
 Identities = 67/111 (60%), Positives = 89/111 (80%)
 Frame = +2

Query: 155 DQSLLVNMDELQLRTAVCREDYRSAHKLKLAIAATSRNDTVGRAVSELHRAIEEERYLDA 334
           DQ  L+++ + QL  A+ REDY  A +LK+AIAAT+ ND VG+ +S  +RA+ EERY DA
Sbjct: 125 DQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEERYKDA 184

Query: 335 AYIRDHAGAGLLGWWSGISESVSDPYGLIIRISAEHGRYVAKSYDIRQLAS 487
            Y+RD AGAGL+GWWSGISE V DP+GLI++I+AEHGRYVA+SY+ RQL++
Sbjct: 185 VYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLST 235



 Score = 34.3 bits (77), Expect = 0.19
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  WSWERWKQHFALVQESERLVDELQ 138
           W W+RWK+HF  V + +RL+  L+
Sbjct: 111 WDWDRWKKHFDQVDDQDRLLSVLK 134



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>KGUA_THETN (Q8R9S6) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 206

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
 Frame = +2

Query: 203 VCREDYRSAHKLKLAIAATSRNDTVG---------RAVSELHRAIEEERYLDAAYIRDH 352
           +C+        LKL+I+AT+R    G         ++  E  R IEE+ +L+ A + DH
Sbjct: 23  ICKALIEKEKDLKLSISATTRQPRAGEVDGKNYFFKSEEEFKRMIEEDAFLEWAKVYDH 81



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>Y2191_MYCTU (Q10384) Hypothetical protein Rv2191/MT2247|
          Length = 645

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
 Frame = +2

Query: 182 ELQLRTAVCREDYRSAHKLKLAIAATSR-----NDTVGRAVSELHRAIEEERYLDAAYIR 346
           EL++       D  +A   +  + A +      N  +  AV ++    E  RY  AA +R
Sbjct: 400 ELEVSACPAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLR 459

Query: 347 DHAGAGLLGWWSG 385
           DH    +   W G
Sbjct: 460 DHLATAIEALWHG 472



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>K0562_MOUSE (Q80V31) Protein KIAA0562|
          Length = 926

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 164 LLVNMDELQLRTAVCREDYRSAHKLKLAIAATSR-NDTVGRAVSELHRAIEEERY 325
           ++  +DE + R AV +E Y  A KLK AIA   +  + +GR   E   A+E+E Y
Sbjct: 216 IIRRLDERK-REAVKKERYDHAKKLKQAIADLQKVGERLGRYEVEKRCAVEKEDY 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,132,305
Number of Sequences: 219361
Number of extensions: 1113507
Number of successful extensions: 2886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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