ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal4c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VL2_HPV58 (P26538) Minor capsid protein L2 28 5.2
2VL2_HPV32 (P36757) Minor capsid protein L2 28 8.8

>VL2_HPV58 (P26538) Minor capsid protein L2|
          Length = 472

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 137 VSLNL*PSFG*PSLLRPSVPTRGSTGILTCCPSTT 33
           VS +L PSF  PS+LRP  P   S  ++   P+ +
Sbjct: 155 VSTHLNPSFTEPSVLRPPAPAEASGHLIFSSPTVS 189



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>VL2_HPV32 (P36757) Minor capsid protein L2|
          Length = 476

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 119 PSFG*PSLLRPSVPTRGSTGILTCCPSTTP 30
           P +  P  LRPS+P  G+  +LT  P+  P
Sbjct: 164 PVYSDPFTLRPSLPVEGNGRLLTSHPTIAP 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,928,915
Number of Sequences: 219361
Number of extensions: 474239
Number of successful extensions: 974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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