| Clone Name | baal4c13 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | VL2_HPV58 (P26538) Minor capsid protein L2 | 28 | 5.2 | 2 | VL2_HPV32 (P36757) Minor capsid protein L2 | 28 | 8.8 |
|---|
>VL2_HPV58 (P26538) Minor capsid protein L2| Length = 472 Score = 28.5 bits (62), Expect = 5.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 137 VSLNL*PSFG*PSLLRPSVPTRGSTGILTCCPSTT 33 VS +L PSF PS+LRP P S ++ P+ + Sbjct: 155 VSTHLNPSFTEPSVLRPPAPAEASGHLIFSSPTVS 189
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 27.7 bits (60), Expect = 8.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 119 PSFG*PSLLRPSVPTRGSTGILTCCPSTTP 30 P + P LRPS+P G+ +LT P+ P Sbjct: 164 PVYSDPFTLRPSLPVEGNGRLLTSHPTIAP 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,928,915 Number of Sequences: 219361 Number of extensions: 474239 Number of successful extensions: 974 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 974 length of database: 80,573,946 effective HSP length: 35 effective length of database: 72,896,311 effective search space used: 1749511464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)