>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2|
            (Apolipophorin II) (apoLp-2); Apolipophorin-1
            (Apolipophorin I) (apoLp-1)]
          Length = 3305

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 19/94 (20%), Positives = 43/94 (45%)
 Frame = +1

Query: 94   VREASSSEREIDVDMQASTSPCERDNNIDLDIHLCSSVDFRIAKDLRSTPSKSRIQPEKS 273
            V  A    ++ID+D++          N+D   H+    D+ I   +++  + + ++    
Sbjct: 1267 VANADVDPKKIDIDIEGQLQDKSAGFNLDARTHIKKEGDYSI--KVKANLNNANLE---- 1320

Query: 274  VKDRASILNLQPANASSHHDTEGLGEETMQGIVM 375
               R  I+N + +N  ++ D +G+G   + G V+
Sbjct: 1321 AFSRRDIVNAEKSNVENYIDMKGVGRYELSGFVL 1354

>CWC15_EMENI (Q5B020) Pre-mRNA-splicing factor cwc15|
          Length = 232

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 23/84 (27%), Positives = 36/84 (42%)
 Frame = +1

Query: 40  ANQSDGRMREPPVDDQSTVREASSSEREIDVDMQASTSPCERDNNIDLDIHLCSSVDFRI 219
           AN  DG + E P   +  + E +   REID D +AS      D + D D          +
Sbjct: 90  ANGGDGELEEDPEAKRRRILEET---REIDADSEASEEDSSEDESDDED------EAAEL 140

Query: 220 AKDLRSTPSKSRIQPEKSVKDRAS 291
            ++L     +   Q EK  ++RA+
Sbjct: 141 MRELEKIKKERLAQKEKEERERAA 164

>UFO1_YEAST (Q04511) Ubiquitin ligase complex F-box protein UFO1|
          Length = 668

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 13  VPEENCHPLANQSDGRMREPPVDDQ-STVREASSSEREIDVDMQASTSPCERDNNIDLDI 189
           V +E    L N + GR   P  DD  +T   A SSER    +   S+   +  NN+D D+
Sbjct: 597 VEDERRRHLRNHTTGRRNGPLSDDNFATYGAAESSERTSTENTIGSSVGVDASNNVDEDL 656

Query: 190 HL 195
            L
Sbjct: 657 QL 658

>ZN571_PONPY (Q5R5Q6) Zinc finger protein 571|
          Length = 608

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +1

Query: 154 PCERDNNIDLDIHLCSSVDFRIAKDLRSTPSKSRIQPEKSVKDRASILNLQPANASSHHD 333
           P +RD   D+ +   S++   I+ DL S+ +  ++ PEK + +  S+      N  +HH 
Sbjct: 25  PAQRDLYRDVMLENYSNL---ISLDLESSCATKKLSPEKEIYEMESLQWENIGNLINHHL 81

Query: 334 TEGLGE 351
             GLG+
Sbjct: 82  QYGLGD 87

>PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.11.1)|
          Length = 1142

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
 Frame = +1

Query: 79   DDQSTVREASSSEREIDVDMQASTSPC-----ERDNNIDLDIHLCSSVDFRIAKD----- 228
            DD S+    +SS  E D ++ +++S C      R+++ +       S+ F    D     
Sbjct: 832  DDSSSQSSVTSSGSESDSELSSTSSSCTSGTQSRNSSNNNAYSETESLPFEFGVDSEDGS 891

Query: 229  ---LRSTPSKSR------IQPEKSVKDRASILNLQPANASSHHDTEGLGEETMQGI 369
               LR  P++ +      IQP + +K ++S LNL+P + SS   +    +E +  +
Sbjct: 892  GVLLRDLPNEDQIRPFLDIQPCRRMKVKSS-LNLEPPSVSSSSSSSSDEDELILNV 946

>Y4JA_RHISN (P55501) Hypothetical 57.2 kDa protein y4jA/y4nE/y4sE|
          Length = 504

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 127 RSLFHLRTLP*LLTGHLLEVPSYDRQID*QVDGSSLLVLP 8
           R +F+  T+P  L GH L V  +D ++D  + G+ LL LP
Sbjct: 330 RKVFY--TVPSRLIGHRLRVRLFDDRLDVFIGGTHLLTLP 367

>CCNA_SPISO (P04962) G2/mitotic-specific cyclin-A|
          Length = 422

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 253 RIQPEKSVKDRASILNLQPANASSHHDTEGLGEETMQ 363
           RIQP ++ K ++S  N+Q  NA +  + +  G++  Q
Sbjct: 48  RIQPSRAAKPKSSEFNIQDENAFTKKNAKTFGQQPSQ 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,104,600
Number of Sequences: 219361
Number of extensions: 1164075
Number of successful extensions: 1964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)