>YPH5_THIVI (P45365) Hypothetical 76.5 kDa protein in phbC 3'region (ORF5)|
          Length = 692

 Score = 36.6 bits (83), Expect = 0.059
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = +2

Query: 164 FLYMICDLEKAREVSGGLHGLVNMTKPVLEAVIFLESIFQSEKRIDLLESLVEKFLTTEQ 343
           F+  +  + +ARE  GG+HGLV +     + ++    +  +EK +  LESL+ K +T E+
Sbjct: 283 FMRHLEQITRAREAQGGVHGLVIIDVDGSQGILNALGLTATEKLLRELESLLSKTMTPEE 342

Query: 344 T 346
           +
Sbjct: 343 S 343

>Y3856_METAC (Q8TJD0) UPF0285 protein MA3856|
          Length = 325

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 34/106 (32%), Positives = 51/106 (48%)
 Frame = +2

Query: 293 RIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYLEFLDTFGDIQLIKKATTRHTILFS 472
           R  L+E   EK LT E  + E A++++KE L++I  EF    GDI L+   T      FS
Sbjct: 14  RFALIED--EKVLTFELGRAEAAAMSEKEILAAIEREFGIRIGDIDLV-ALTYSMGDGFS 70

Query: 473 RKRSILPSKKRRADDAVMSGRDKMAKTGDGTQPVMGTDPNAHNPAV 610
             + +   + R       +G+    KTG GT+ V     N+  PA+
Sbjct: 71  AIKDVRKLEGRGLQSIEGAGK----KTGGGTR-VFDAVRNSEIPAI 111

>TAGH_BACSK (Q5WCL2) Teichoic acids export ATP-binding protein tagH (EC|
           3.6.3.40)
          Length = 360

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 350 GELASLNDKEELSSIYLEFLDTFGDIQLIKKATTRHTILFSRKRSILPSKKRRADDAVMS 529
           GE+    DK E+   Y ++++ F   +L K+    H       RS+ PS     ++    
Sbjct: 221 GEVREFGDKNEVIKQYEDYINWFN--KLSKEEKEAHKQELKEMRSLAPSLYEEQENG--- 275

Query: 530 GRDKMAKTGDGTQPVM 577
              K    GDGTQP++
Sbjct: 276 ---KAGSGGDGTQPIV 288

>CLF1_YEAST (Q12309) Pre-mRNA-splicing factor CLF1 (Crooked neck-like factor 1)|
           (PRP19-associated complex protein 77) (Synthetic lethal
           with CDC40 protein 3)
          Length = 687

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
 Frame = +2

Query: 149 IQYSRFLYMICDLEKAREVSGGLHGLVNMTKPVLEAVIFLESIFQSEKRIDLLESLVEKF 328
           + Y++FL    D+ KAR++ G   GL    K   +  I LE      K  D +  + EKF
Sbjct: 408 LMYAKFLIRHDDVPKARKILGKAIGLCPKAK-TFKGYIELE---VKLKEFDRVRKIYEKF 463

Query: 329 LTTEQTQ-------GEL-ASLNDKEELSSIYLEFLDTFGDIQLIKKA 445
           +  + +        GEL  +L D + +  IY   LD   D  L K+A
Sbjct: 464 IEFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDF-LTKEA 509

>Y1436_LISIN (P0A4Q7) UPF0144 protein lin1436|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 269 ESIFQSEKRIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYL 400
           ESI + +++I+  ES + + +  EQT+ E  S   KEE  SI L
Sbjct: 117 ESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL 160

>Y1418_LISMF (Q71ZS1) UPF0144 protein LMOf2365_1418|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 269 ESIFQSEKRIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYL 400
           ESI + +++I+  ES + + +  EQT+ E  S   KEE  SI L
Sbjct: 117 ESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL 160

>Y1399_LISMO (P0A4Q6) UPF0144 protein lmo1399|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 269 ESIFQSEKRIDLLESLVEKFLTTEQTQGELASLNDKEELSSIYL 400
           ESI + +++I+  ES + + +  EQT+ E  S   KEE  SI L
Sbjct: 117 ESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL 160

>NOX_THET8 (Q60049) NADH dehydrogenase (EC 1.6.99.3) (H(2)O(2) forming NADH|
           oxidase) (NADH:oxygen oxidoreductase)
          Length = 205

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -1

Query: 588 GSVPMTGWVPSPVLAILSLPDITASSAL 505
           GSVPM G+ P  V AIL LP   A  AL
Sbjct: 153 GSVPMLGFDPERVRAILGLPSHAAIPAL 180

>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +2

Query: 269 ESIFQSEKRIDLL--ESLVEKFLTTEQTQGELASLNDKEELSSIYLEFLDTFGDIQLIKK 442
           E+ ++ EK   LL  + + E+   TE+   E+     KE+ S   LE  +  GD+   KK
Sbjct: 424 EAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKK 483

Query: 443 ATTRHTILFSRKRSILPSKKRRADDAVMSGRDKMAKTGDGT 565
            T   T       S+L  KK   +     GR +   +  G+
Sbjct: 484 RTPNET------TSVLEPKKEHKEKE-KQGRSRSGSSSSGS 517


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,846,197
Number of Sequences: 219361
Number of extensions: 1515785
Number of successful extensions: 4035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4034
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)