| Clone Name | baal4b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103949.1| Zea mays PCO103424 mRNA sequence Length = 1035 Score = 139 bits (70), Expect = 1e-29 Identities = 214/262 (81%) Strand = Plus / Plus Query: 243 cagttcttgaggctgtcatctttctcgagtcgatctttcaatctgagaagcgaattgatt 302 |||| |||||||||||||| ||| ||||| || |||| || || ||||| ||||||| Sbjct: 73 cagtgcttgaggctgtcattcatctagagtcaatttttccatgcgaaaagcgtattgatt 132 Query: 303 tgttagaatcactggtggagaagtttcttacaactgagcagactcaaggggagctggcaa 362 | ||||| ||||| |||||||||||| ||||| |||| |||| || ||| |||||| Sbjct: 133 ttttagactcacttgtggagaagtttgttacacctgaatcatctcagggagaggtggcaa 192 Query: 363 gcttaaacgacaaagaggaattatcttccatatatttagagtttttggatacctttgggg 422 | || |||||||||||| |||||||||||| |||||||||||||||| |||||||| Sbjct: 193 gtctagttgacaaagaggaaatatcttccatatttttagagtttttggatctctttgggg 252 Query: 423 atatacagttgatcaagaaggctacaactcgacatactattctattttcacgtaaaagga 482 || | ||| |||||||||||| |||||| ||||| | ||| |||||| |||| || | Sbjct: 253 atgcaaagtcaatcaagaaggctttaactcggcatacaactcttttttcatgtaagagaa 312 Query: 483 gcattctgccatcaaagaaacg 504 |||||||||||||||||||||| Sbjct: 313 gcattctgccatcaaagaaacg 334
>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full insert sequence Length = 2797 Score = 119 bits (60), Expect = 1e-23 Identities = 123/144 (85%) Strand = Plus / Plus Query: 27 ttgtgaagcatgctaatatggagcaccggctgggagataaggaatctgcttgtttagttt 86 |||| |||||| |||||||||||||||| |||||||||| ||||||||||| | | ||| Sbjct: 1678 ttgttaagcattctaatatggagcaccgattgggagataaagaatctgcttgctcaattt 1737 Query: 87 atgagaaagccattgctgccgaaaaggaaaaggagcagagccagtttttaccaatgctac 146 ||||||| |||||||| || |||||||||||||| | ||||||| |||| || | | | Sbjct: 1738 atgagaaggccattgccgctgaaaaggaaaaggatcggagccagattttgcctactttgc 1797 Query: 147 tgattcagtactcacgtttcttat 170 |||||||||||||||| ||||||| Sbjct: 1798 tgattcagtactcacgattcttat 1821 Score = 113 bits (57), Expect = 7e-22 Identities = 186/229 (81%) Strand = Plus / Plus Query: 384 tatcttccatatatttagagtttttggatacctttggggatatacagttgatcaagaagg 443 |||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||| Sbjct: 2038 tatcttccatatttttagagtttttggatctatttggggatgcacaagcgatcaagaagg 2097 Query: 444 ctacaactcgacatactattctattttcacgtaaaaggagcattctgccatcaaagaaac 503 |||| | ||| ||| || || ||||| || || || ||||| ||| |||||||||| | Sbjct: 2098 ctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtcatcaaagaagc 2157 Query: 504 gaagagccgatgatgctgttatgtctggtagagataaaatggctaaaaccggagatggca 563 ||||||| ||||||| | | ||||| | ||||||||| |||||| | || ||||| | Sbjct: 2158 gaagagctgatgatgttatcatgtcagacagagataaattggctaggattggggatggta 2217 Query: 564 cccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 612 | || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 2218 ctcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 2266 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 269 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 328 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 1923 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 1982 Query: 329 cttacaactga 339 |||||| |||| Sbjct: 1983 cttacagctga 1993
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 58 gggagataaggaatctgcttgtttagtttatgagaaagccattgctgccgaaaaggaaaa 117 ||||||||| ||||||||||| | | |||||||||| |||||||| || ||||||||||| Sbjct: 5731385 gggagataaagaatctgcttgctcaatttatgagaaggccattgccgctgaaaaggaaaa 5731326 Query: 118 ggagcagagccagtttttaccaatgctactgattcagtactcacgtttcttat 170 ||| | ||||||| |||| || | | ||||||||||||||||| ||||||| Sbjct: 5731325 ggatcggagccagattttgcctactttgctgattcagtactcacgattcttat 5731273 Score = 87.7 bits (44), Expect = 4e-14 Identities = 146/180 (81%) Strand = Plus / Minus Query: 433 gatcaagaaggctacaactcgacatactattctattttcacgtaaaaggagcattctgcc 492 ||||||||||||||| | ||| ||| || || ||||| || || || ||||| ||| | Sbjct: 5730199 gatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtc 5730140 Query: 493 atcaaagaaacgaagagccgatgatgctgttatgtctggtagagataaaatggctaaaac 552 ||||||||| |||||||| ||||||| | | ||||| | ||||||||| |||||| | Sbjct: 5730139 atcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggat 5730080 Query: 553 cggagatggcacccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 612 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 5730079 tggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 5730020 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 269 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 328 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 5730730 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 5730671 Query: 329 cttacaactga 339 |||||| |||| Sbjct: 5730670 cttacagctga 5730660 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ttgtgaagcatgctaatatggagcaccg 54 |||| |||||| |||||||||||||||| Sbjct: 5731497 ttgttaagcattctaatatggagcaccg 5731470
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 58 gggagataaggaatctgcttgtttagtttatgagaaagccattgctgccgaaaaggaaaa 117 ||||||||| ||||||||||| | | |||||||||| |||||||| || ||||||||||| Sbjct: 99786 gggagataaagaatctgcttgctcaatttatgagaaggccattgccgctgaaaaggaaaa 99845 Query: 118 ggagcagagccagtttttaccaatgctactgattcagtactcacgtttcttat 170 ||| | ||||||| |||| || | | ||||||||||||||||| ||||||| Sbjct: 99846 ggatcggagccagattttgcctactttgctgattcagtactcacgattcttat 99898 Score = 87.7 bits (44), Expect = 4e-14 Identities = 146/180 (81%) Strand = Plus / Plus Query: 433 gatcaagaaggctacaactcgacatactattctattttcacgtaaaaggagcattctgcc 492 ||||||||||||||| | ||| ||| || || ||||| || || || ||||| ||| | Sbjct: 100972 gatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtc 101031 Query: 493 atcaaagaaacgaagagccgatgatgctgttatgtctggtagagataaaatggctaaaac 552 ||||||||| |||||||| ||||||| | | ||||| | ||||||||| |||||| | Sbjct: 101032 atcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggat 101091 Query: 553 cggagatggcacccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 612 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 101092 tggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 101151 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 269 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 328 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 100441 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 100500 Query: 329 cttacaactga 339 |||||| |||| Sbjct: 100501 cttacagctga 100511 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 27 ttgtgaagcatgctaatatggagcaccg 54 |||| |||||| |||||||||||||||| Sbjct: 99674 ttgttaagcattctaatatggagcaccg 99701
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 58 gggagataaggaatctgcttgtttagtttatgagaaagccattgctgccgaaaaggaaaa 117 ||||||||| ||||||||||| | | |||||||||| |||||||| || ||||||||||| Sbjct: 5730598 gggagataaagaatctgcttgctcaatttatgagaaggccattgccgctgaaaaggaaaa 5730539 Query: 118 ggagcagagccagtttttaccaatgctactgattcagtactcacgtttcttat 170 ||| | ||||||| |||| || | | ||||||||||||||||| ||||||| Sbjct: 5730538 ggatcggagccagattttgcctactttgctgattcagtactcacgattcttat 5730486 Score = 87.7 bits (44), Expect = 4e-14 Identities = 146/180 (81%) Strand = Plus / Minus Query: 433 gatcaagaaggctacaactcgacatactattctattttcacgtaaaaggagcattctgcc 492 ||||||||||||||| | ||| ||| || || ||||| || || || ||||| ||| | Sbjct: 5729412 gatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtc 5729353 Query: 493 atcaaagaaacgaagagccgatgatgctgttatgtctggtagagataaaatggctaaaac 552 ||||||||| |||||||| ||||||| | | ||||| | ||||||||| |||||| | Sbjct: 5729352 atcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggat 5729293 Query: 553 cggagatggcacccaaccagtcatgggaactgatccaaatgctcataatcctgcagtttg 612 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 5729292 tggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttg 5729233 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 269 gagtcgatctttcaatctgagaagcgaattgatttgttagaatcactggtggagaagttt 328 ||||||||| ||| |||||| ||||| ||||| || ||||| |||||||| ||||||||| Sbjct: 5729943 gagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagttt 5729884 Query: 329 cttacaactga 339 |||||| |||| Sbjct: 5729883 cttacagctga 5729873 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 27 ttgtgaagcatgctaatatggagcaccg 54 |||| |||||| |||||||||||||||| Sbjct: 5730710 ttgttaagcattctaatatggagcaccg 5730683
>gb|AC121840.3| Mus musculus BAC clone RP24-79E2 from chromosome 3, complete sequence Length = 180558 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 agagataaaatggctaaaacc 553 ||||||||||||||||||||| Sbjct: 171770 agagataaaatggctaaaacc 171790
>gb|AC122729.23| Medicago truncatula clone mth1-62g18, complete sequence Length = 82977 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 576 tgggaactgatccaaatgctc 596 ||||||||||||||||||||| Sbjct: 33427 tgggaactgatccaaatgctc 33447
>gb|AC162611.2| Mus musculus chromosome 3, clone RP24-86E1, complete sequence Length = 229643 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gttcttgaggctgtcatcttt 265 ||||||||||||||||||||| Sbjct: 155703 gttcttgaggctgtcatcttt 155723
>gb|AC105177.5| Homo sapiens chromosome 8, clone RP11-91D24, complete sequence Length = 149126 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 atgatctgtgacttggaaaag 193 ||||||||||||||||||||| Sbjct: 100576 atgatctgtgacttggaaaag 100556
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 gaattgatttgttagaatcac 314 ||||||||||||||||||||| Sbjct: 9615327 gaattgatttgttagaatcac 9615307
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0693E08 Length = 157969 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 gaattgatttgttagaatcac 314 ||||||||||||||||||||| Sbjct: 79545 gaattgatttgttagaatcac 79525
>gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, complete sequence Length = 162643 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 gttcttgaggctgtcatcttt 265 ||||||||||||||||||||| Sbjct: 133162 gttcttgaggctgtcatcttt 133142
>dbj|AP005359.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1470F2, complete sequence Length = 164913 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 atgatctgtgacttggaaaag 193 ||||||||||||||||||||| Sbjct: 47275 atgatctgtgacttggaaaag 47255
>dbj|AP005368.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB870F5, complete sequence Length = 111461 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 atgatctgtgacttggaaaag 193 ||||||||||||||||||||| Sbjct: 109955 atgatctgtgacttggaaaag 109935
>gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, complete sequence Length = 242587 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gaaaaggaaaaggagcagag 126 |||||||||||||||||||| Sbjct: 154841 gaaaaggaaaaggagcagag 154860
>ref|XM_661903.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30455) partial mRNA Length = 636 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agccagtttttaccaatgct 144 |||||||||||||||||||| Sbjct: 386 agccagtttttaccaatgct 405
>gb|AC131249.43| Medicago truncatula clone mth2-8p18, complete sequence Length = 104866 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 580 aactgatccaaatgctcata 599 |||||||||||||||||||| Sbjct: 47531 aactgatccaaatgctcata 47512
>emb|AL138854.1|SPAC23G3 S.pombe chromosome I cosmid c23G3 Length = 41181 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 atcactggtggagaagtttc 329 |||||||||||||||||||| Sbjct: 16582 atcactggtggagaagtttc 16563
>gb|AC021542.8| Homo sapiens chromosome 15, clone RP11-507B12, complete sequence Length = 80114 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 aaaaggaaaaggagcagagccagt 131 |||||||||| ||||||||||||| Sbjct: 13839 aaaaggaaaatgagcagagccagt 13862
>ref|XM_626948.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_4040), partial mRNA Length = 657 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agccagtttttaccaatgct 144 |||||||||||||||||||| Sbjct: 407 agccagtttttaccaatgct 426
>ref|NM_001018499.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC23G3.02c), partial mRNA Length = 14775 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 atcactggtggagaagtttc 329 |||||||||||||||||||| Sbjct: 157 atcactggtggagaagtttc 176
>gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, complete sequence Length = 204540 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 aattgatttgttagaatcactggt 318 ||||||||| |||||||||||||| Sbjct: 195311 aattgatttcttagaatcactggt 195334
>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence Length = 204493 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cttggaaaaggcaagggagg 203 |||||||||||||||||||| Sbjct: 110259 cttggaaaaggcaagggagg 110240
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cattgctgccgaaaaggaaa 116 |||||||||||||||||||| Sbjct: 1761109 cattgctgccgaaaaggaaa 1761090
>emb|AL954850.12| Mouse DNA sequence from clone RP23-331B22 on chromosome X, complete sequence Length = 146713 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 457 tactattctattttcacgtaaaag 480 |||||||||||||||| ||||||| Sbjct: 105698 tactattctattttcaagtaaaag 105721
>emb|AL844849.13| Mouse DNA sequence from clone RP23-383L13 on chromosome 2, complete sequence Length = 155501 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 aattgatttgttagaatcac 314 |||||||||||||||||||| Sbjct: 71266 aattgatttgttagaatcac 71247
>gb|AC161047.2| Mus musculus BAC clone RP24-189I12 from chromosome 12, complete sequence Length = 153447 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ttaccaatgctactgattca 153 |||||||||||||||||||| Sbjct: 34056 ttaccaatgctactgattca 34037 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,637,396 Number of Sequences: 3902068 Number of extensions: 5637396 Number of successful extensions: 113922 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113723 Number of HSP's gapped (non-prelim): 189 length of query: 612 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 589 effective length of database: 17,143,297,704 effective search space: 10097402347656 effective search space used: 10097402347656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)