ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal3l24 |
|---|---|
| Clone Library Name | barley_pub |
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 513 VTDLLRGVPGQEDIHLGLELDQRSCLHGEEQVACVRAVPSEHLPTVVH 370 +TDL+R P HL +EL R C H ++C +E T +H Sbjct: 110 LTDLIRNHPSWSVAHLAVELGIRECFHHSRIISCANCAENEEGCTPLH 157
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = -3 Query: 513 VTDLLRGVPGQEDIHLGLELDQRSCLHGEEQVACVRAVPSEHLPTVVH 370 +TDL+R P HL +EL R C H ++C + +E T +H Sbjct: 110 LTDLIRNHPSWTVTHLAVELGIRECFHHSRIISCANSTENEEGCTPLH 157
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 34.7 bits (78), Expect = 0.16 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 513 VTDLLRGVPGQEDIHLGLELDQRSCLHGEEQVACVRAVPSEHLPTVVH 370 +TDL+R P HL +EL R C H + C + +E T +H Sbjct: 109 LTDLIRNHPSWTVTHLAVELGIRECFHHSRIITCANSTENEEGCTPLH 156
>PTG3C_STRPN (P35595) PTS system glucose-specific EIICBA component (EIICBA-Glc)| (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC component (PTS system glucose-specific EIIC component); Glucose-specific phosphotransferase enzyme IIB component (EC 2.7.1.6 Length = 726 Score = 32.3 bits (72), Expect = 0.79 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Frame = +1 Query: 223 LSDGDFAIIDANGAVVLKVKGAIFSI-----------RSRRTILDGAGMPLLTMQEKAFS 369 + DG FA+ ANG +V V G + SI + +L G+ ++++ K F+ Sbjct: 604 MGDG-FAVEPANGNIVSPVSGTVSSIFPTKHAFGIVTEAGLEVLVHIGLDTVSLEGKPFT 662 Query: 370 MHHRWQVFRGDSTNAGDLLFT 432 +H V G AGDLL T Sbjct: 663 VH----VAEGQKVAAGDLLVT 679
>LRC56_MOUSE (Q8K375) Leucine-rich repeat-containing protein 56| Length = 552 Score = 32.0 bits (71), Expect = 1.0 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +3 Query: 18 QARAPIXSP-EQAEQTPPATHRLPPRSCSEAPRTDG 122 QA+ P P EQ +QT P T PPR SE RT G Sbjct: 409 QAQDPQKDPVEQEDQTGPKTSLTPPRLVSELSRTSG 444
>POLG_DEN1T (P29983) Genome polyprotein [Contains: Envelope protein M (Matrix| protein); Major envelope protein E; Nonstructural protein 1 (NS1)] (Fragment) Length = 555 Score = 31.6 bits (70), Expect = 1.3 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +1 Query: 283 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 429 GA+ S RT LD M LLTM+EK++ +H +W + G ST N DLL Sbjct: 228 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 287 Query: 430 TVKT 441 T KT Sbjct: 288 TFKT 291
>POLG_DEN1S (P33478) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3396 Score = 31.6 bits (70), Expect = 1.3 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +1 Query: 283 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 429 GA+ S RT LD M LLTM+EK++ +H +W + G ST N DLL Sbjct: 459 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 518 Query: 430 TVKT 441 T KT Sbjct: 519 TFKT 522
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%) Frame = +3 Query: 3 SGETRQARAPIXSPEQAEQTP--------PATHRLPPRSCSEAPRTDGDG 128 S + R++R+P SP++ +++P P+ P RS S +P +GDG Sbjct: 261 SADNRKSRSPSRSPKKVDRSPSPPRGSRSPSEKGSPRRSRSASPMDNGDG 310
>POLG_DEN1W (P17763) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A)] (Fragment) Length = 1226 Score = 30.4 bits (67), Expect = 3.0 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +1 Query: 283 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 429 GA+ S RT LD M LLTM++K++ +H +W + G ST N DLL Sbjct: 459 GALTLDCSPRTGLDFNEMVLLTMEKKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 518 Query: 430 TVKT 441 T KT Sbjct: 519 TFKT 522
>POLG_DEN18 (P27910) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1)] (Fragment) Length = 792 Score = 30.4 bits (67), Expect = 3.0 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +1 Query: 283 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 429 GA+ S RT LD M LLTM++K++ +H +W + G ST N DLL Sbjct: 459 GALTLDCSPRTGLDFNRMVLLTMEKKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 518 Query: 430 TVKT 441 T KT Sbjct: 519 TFKT 522
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 29.6 bits (65), Expect = 5.1 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +3 Query: 24 RAPIXSPEQ---AEQTPPATHRLPPRSCSEAPRTD 119 R+P SPE A +TPP R PRS S PR + Sbjct: 120 RSPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAE 154
>K1683_MACFA (Q8WNU4) Protein KIAA1683 homolog (Fragment)| Length = 798 Score = 29.6 bits (65), Expect = 5.1 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -1 Query: 401 SPLNTCQRWCILNAFSCMVRRGIPAPSRMVRRLRMLKMAPLTLSTTAP-LASMMAKSPS 228 SPL TC N S M G+ PSR R M+ P L + A L ++ SP+ Sbjct: 85 SPLQTCLAATTSNTSSQMSPVGLTKPSRQTRLAAMITKTPAQLRSVATILKTLCLASPT 143
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 29.6 bits (65), Expect = 5.1 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +3 Query: 24 RAPIXSPEQ---AEQTPPATHRLPPRSCSEAPRTD 119 R+P SPE A +TPP R PRS S PR + Sbjct: 120 RSPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAE 154
>MSA2_PLAFZ (Q03645) Merozoite surface antigen 2 precursor (MSA-2)| Length = 300 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 200 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 235
>MSA2_PLAFI (Q03644) Merozoite surface antigen 2 precursor (MSA-2)| Length = 300 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 200 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 235
>MSA2_PLAFH (Q99319) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 3) Length = 281 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 181 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 216
>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 2) (Membrane protein PF7) Length = 287 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 187 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 222
>MSA2_PLAF9 (Q03994) Merozoite surface antigen 2 precursor (MSA-2)| Length = 302 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 202 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 237
>MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)| Length = 347 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 247 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 282
>MSA2_PLAFC (Q99317) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 1) Length = 262 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 162 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 197
>MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)| Length = 286 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 186 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 221
>MSA2_PLAF7 (P50498) Merozoite surface antigen 2 precursor (MSA-2) (45 kDa| merozoite surface antigen) Length = 272 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 172 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 207
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 12 TRQARAPIXSPEQAEQTPPATHRLPPRSCSEAPRT 116 TRQ +P SP Q+ P + P S S +PRT Sbjct: 400 TRQLSSPNHSPSQSPNQSPRIKKRPDPSVSPSPRT 434
>MSA2_PLAF6 (P50497) Merozoite surface antigen 2 precursor (MSA-2)| Length = 274 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 24 RAPIXSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 131 ++P PEQAE + P + AP G GQ Sbjct: 174 KSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,528,394 Number of Sequences: 219361 Number of extensions: 969659 Number of successful extensions: 3723 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3718 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
