>ref|NM_190603.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2208

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 203 ggcggacctcgagaacagcgactccacccgctgcttcgtcagggacgt 250
           ||||||| | ||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 51  ggcggacgtggagaacaccgactccacccgcggcttcgtcaaggacgt 98

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 203      ggcggacctcgagaacagcgactccacccgctgcttcgtcagggacgt 250
                ||||||| | ||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 36424476 ggcggacgtggagaacaccgactccacccgcggcttcgtcaaggacgt 36424523

>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0005H10
          Length = 142885

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 203   ggcggacctcgagaacagcgactccacccgctgcttcgtcagggacgt 250
             ||||||| | ||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 76315 ggcggacgtggagaacaccgactccacccgcggcttcgtcaaggacgt 76362

>dbj|AK101230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031H21, full
           insert sequence
          Length = 2739

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 203 ggcggacctcgagaacagcgactccacccgctgcttcgtcagggacgt 250
           ||||||| | ||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 241 ggcggacgtggagaacaccgactccacccgcggcttcgtcaaggacgt 288

>dbj|AK069425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019K03, full
           insert sequence
          Length = 3386

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 203 ggcggacctcgagaacagcgactccacccgctgcttcgtcagggacgt 250
           ||||||| | ||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 185 ggcggacgtggagaacaccgactccacccgcggcttcgtcaaggacgt 232

>emb|AL591496.13| Mouse DNA sequence from clone RP23-384C18 on chromosome 11 Contains the
              3' end of a novel gene, five novel genes, the Serpinf1 and
              Serpinf2 genes for serine (or cysteine) proteinase
              inhibitor, clade F) members 1 and 2, an H+ transporting
              mitochondrial F0 complex ATP synthase subunit c (subunit 9)
              isoform 1 (Atp5g1) pseudogene, the Prpf8 gene for pre-mRNA
              processing factor 8, the gene for the ortholog of human
              scavenger receptor class F member 1 SCARF1, the 5' end of
              the gene for novel protein similar to solute carrier family
              43 member 1 Slc43a1 and seven CpG islands, complete
              sequence
          Length = 205633

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 220    gcgactccacccgctgcttcgt 241
              ||||||||||||||||||||||
Sbjct: 138406 gcgactccacccgctgcttcgt 138385

>gb|AC002121.1| Genomic sequence from Mouse 11, complete sequence
          Length = 84056

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 220   gcgactccacccgctgcttcgt 241
             ||||||||||||||||||||||
Sbjct: 62144 gcgactccacccgctgcttcgt 62165

>ref|NM_138659.1| Mus musculus pre-mRNA processing factor 8 (Prpf8), mRNA
          Length = 7143

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 220  gcgactccacccgctgcttcgt 241
            ||||||||||||||||||||||
Sbjct: 2079 gcgactccacccgctgcttcgt 2058

>dbj|AK144232.1| Mus musculus nullipotent stem cell CRL-2070 NE cDNA, RIKEN
            full-length enriched library, clone:G430136B12
            product:pre-mRNA processing factor 8, full insert
            sequence
          Length = 3278

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 220  gcgactccacccgctgcttcgt 241
            ||||||||||||||||||||||
Sbjct: 2113 gcgactccacccgctgcttcgt 2092

>dbj|AK041017.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530061L10 product:splicing
            factor PRP8-like (S. cerevisiae), full insert sequence
          Length = 2398

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 220  gcgactccacccgctgcttcgt 241
            ||||||||||||||||||||||
Sbjct: 2120 gcgactccacccgctgcttcgt 2099

>dbj|AK060848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E05, full
           insert sequence
          Length = 1461

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 10  ccacccacctccaccttgacctcgcc 35
           |||||||||||||||| |||||||||
Sbjct: 325 ccacccacctccacctcgacctcgcc 350

>dbj|AB047391.1| Mus musculus Prp8 mRNA for pre-mRNA processing 8 protein, complete
            cds
          Length = 7143

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 220  gcgactccacccgctgcttcgt 241
            ||||||||||||||||||||||
Sbjct: 2079 gcgactccacccgctgcttcgt 2058

>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete
              sequence
          Length = 132981

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 11     cacccacctccaccttgacctcgcc 35
              ||||||||||||||| |||||||||
Sbjct: 123273 cacccacctccacctcgacctcgcc 123249

>gb|AC147803.2| Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence,
            complete sequence
          Length = 35334

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 11   cacccacctccaccttgacctcgcc 35
            ||||||||||||||| |||||||||
Sbjct: 2794 cacccacctccacctcgacctcgcc 2770

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 11       cacccacctccaccttgacctcgcc 35
                ||||||||||||||| |||||||||
Sbjct: 18218288 cacccacctccacctcgacctcgcc 18218264

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 11       cacccacctccaccttgacctcgcc 35
                ||||||||||||||| |||||||||
Sbjct: 18211829 cacccacctccacctcgacctcgcc 18211805

>dbj|AK106105.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C11, full
           insert sequence
          Length = 1562

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 11  cacccacctccaccttgacctcgcc 35
           ||||||||||||||| |||||||||
Sbjct: 427 cacccacctccacctcgacctcgcc 451

>dbj|AK065159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B24, full
           insert sequence
          Length = 1411

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 11  cacccacctccaccttgacctcgcc 35
           ||||||||||||||| |||||||||
Sbjct: 390 cacccacctccacctcgacctcgcc 414

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cgttgcggcggcggacctcg 213
              ||||||||||||||||||||
Sbjct: 764474 cgttgcggcggcggacctcg 764455

>emb|AL359253.17| Human DNA sequence from clone RP11-428L19 on chromosome 9 Contains the
             5' end of the PCSK5 gene for proprotein convertase
             subtilisin/kexin type 5 and two CpG islands, complete
             sequence
          Length = 189608

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    cccgttctccctcgctccct 62
             ||||||||||||||||||||
Sbjct: 23009 cccgttctccctcgctccct 22990

>gb|AC138772.4| Homo sapiens BAC clone RP11-1345A16 from UL, complete sequence
          Length = 213227

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  cctcgagaacagcgactcca 228
            ||||||||||||||||||||
Sbjct: 1765 cctcgagaacagcgactcca 1784

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     cctcgcccacccgttctccctcgc 57
              |||||||||||| |||||||||||
Sbjct: 356006 cctcgcccaccccttctccctcgc 356029

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     cctcgcccacccgttctccctcgc 57
              |||||||||||| |||||||||||
Sbjct: 356006 cctcgcccaccccttctccctcgc 356029

>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    cctcgcccacccgttctccctcgc 57
             |||||||||||| |||||||||||
Sbjct: 63324 cctcgcccaccccttctccctcgc 63347


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,241,129
Number of Sequences: 3902068
Number of extensions: 1241129
Number of successful extensions: 30431
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30300
Number of HSP's gapped (non-prelim): 131
length of query: 252
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 230
effective length of database: 17,147,199,772
effective search space: 3943855947560
effective search space used: 3943855947560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)