| Clone Name | baal3j13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 109 bits (55), Expect = 1e-21 Identities = 73/79 (92%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||| ||| Sbjct: 17344733 caccatcaacgccgccggttgcgtcatcgagaccatctacatcgtcatgtacctcgccta 17344674 Query: 70 cgcccccaggaaggccaag 88 |||||||| |||||||||| Sbjct: 17344673 cgcccccaagaaggccaag 17344655
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 109 bits (55), Expect = 1e-21 Identities = 73/79 (92%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||| ||| Sbjct: 17299104 caccatcaacgccgccggttgcgtcatcgagaccatctacatcgtcatgtacctcgccta 17299045 Query: 70 cgcccccaggaaggccaag 88 |||||||| |||||||||| Sbjct: 17299044 cgcccccaagaaggccaag 17299026
>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154826 Score = 109 bits (55), Expect = 1e-21 Identities = 73/79 (92%) Strand = Plus / Plus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||| ||| Sbjct: 58636 caccatcaacgccgccggttgcgtcatcgagaccatctacatcgtcatgtacctcgccta 58695 Query: 70 cgcccccaggaaggccaag 88 |||||||| |||||||||| Sbjct: 58696 cgcccccaagaaggccaag 58714
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 93.7 bits (47), Expect = 8e-17 Identities = 77/87 (88%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||| | || |||||||||||||||||| |||||||| | | ||||||||||| Sbjct: 82433 caccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctcgtcta 82374 Query: 70 cgcccccaggaaggccaagattttcac 96 |||||||| |||||||||||| ||||| Sbjct: 82373 cgcccccaagaaggccaagatgttcac 82347
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 93.7 bits (47), Expect = 8e-17 Identities = 77/87 (88%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||| | || |||||||||||||||||| |||||||| | | ||||||||||| Sbjct: 17574622 caccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctcgtcta 17574563 Query: 70 cgcccccaggaaggccaagattttcac 96 |||||||| |||||||||||| ||||| Sbjct: 17574562 cgcccccaagaaggccaagatgttcac 17574536
>dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071H09, full insert sequence Length = 1494 Score = 93.7 bits (47), Expect = 8e-17 Identities = 77/87 (88%) Strand = Plus / Plus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||| | || |||||||||||||||||| |||||||| | | ||||||||||| Sbjct: 451 caccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctcgtcta 510 Query: 70 cgcccccaggaaggccaagattttcac 96 |||||||| |||||||||||| ||||| Sbjct: 511 cgcccccaagaaggccaagatgttcac 537
>gb|AY105872.1| Zea mays PCO079046 mRNA sequence Length = 1346 Score = 93.7 bits (47), Expect = 8e-17 Identities = 71/79 (89%) Strand = Plus / Plus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||||| ||||||||||||||||||||| ||||| || |||||||| ||||||| Sbjct: 463 caccatcaacgccgccggctgcgtcatcgagaccatctacgtcgtcatgtacttcgtcta 522 Query: 70 cgcccccaggaaggccaag 88 ||| |||| ||| |||||| Sbjct: 523 cgcgcccaagaaagccaag 541
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 93.7 bits (47), Expect = 8e-17 Identities = 77/87 (88%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||| | || |||||||||||||||||| |||||||| | | ||||||||||| Sbjct: 17668446 caccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctcgtcta 17668387 Query: 70 cgcccccaggaaggccaagattttcac 96 |||||||| |||||||||||| ||||| Sbjct: 17668386 cgcccccaagaaggccaagatgttcac 17668360
>ref|XM_465955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1562 Score = 65.9 bits (33), Expect = 2e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 29 tgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgccccca 77 ||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 441 tgcgtcatcgagaccgtctacctcgccatgtacctcgcctacgccccca 489
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 2e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 29 tgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgccccca 77 ||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 18555415 tgcgtcatcgagaccgtctacctcgccatgtacctcgcctacgccccca 18555367
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 65.9 bits (33), Expect = 2e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 29 tgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgccccca 77 ||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 96554 tgcgtcatcgagaccgtctacctcgccatgtacctcgcctacgccccca 96506
>dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124G19, full insert sequence Length = 1562 Score = 65.9 bits (33), Expect = 2e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 29 tgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgccccca 77 ||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 441 tgcgtcatcgagaccgtctacctcgccatgtacctcgcctacgccccca 489
>gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence Length = 1159 Score = 61.9 bits (31), Expect = 3e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatc 52 |||||||||| | ||||||||||||||||||||| |||||||| Sbjct: 103 caccatcaactccgccggctgcgtcatcgagaccctctacatc 145
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 60.0 bits (30), Expect = 1e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||||| |||||||||| ||||| ||| ||||||| | | ||||||||||| Sbjct: 122022 caccatcaacgccttcggctgcgtcgtcgaggccgcctacatcgccgtctacctcgtcta 121963 Query: 70 cgcccccagg 79 |||||||||| Sbjct: 121962 cgcccccagg 121953
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 1e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 10 caccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtcta 69 |||||||||||| |||||||||| ||||| ||| ||||||| | | ||||||||||| Sbjct: 19402796 caccatcaacgccttcggctgcgtcgtcgaggccgcctacatcgccgtctacctcgtcta 19402737 Query: 70 cgcccccagg 79 |||||||||| Sbjct: 19402736 cgcccccagg 19402727
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Plus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 400 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 459 Query: 71 gc 72 || Sbjct: 460 gc 461
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Plus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 401 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 460 Query: 71 gc 72 || Sbjct: 461 gc 462
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Minus Query: 25 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 84 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 12981867 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 12981808 Query: 85 ca 86 || Sbjct: 12981807 ca 12981806
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Minus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 26720012 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 26719953 Query: 71 gc 72 || Sbjct: 26719952 gc 26719951
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Minus Query: 25 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 84 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 12978642 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 12978583 Query: 85 ca 86 || Sbjct: 12978582 ca 12978581
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Minus Query: 25 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 84 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 59565 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 59506 Query: 85 ca 86 || Sbjct: 59505 ca 59504
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Minus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 131539 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 131480 Query: 71 gc 72 || Sbjct: 131479 gc 131478
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Minus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 63354 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 63295 Query: 71 gc 72 || Sbjct: 63294 gc 63293
>dbj|AK109114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C05, full insert sequence Length = 1492 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Plus Query: 25 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 84 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 377 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 436 Query: 85 ca 86 || Sbjct: 437 ca 438
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Plus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 400 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 459 Query: 71 gc 72 || Sbjct: 460 gc 461
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 44.1 bits (22), Expect = 0.069 Identities = 52/62 (83%) Strand = Plus / Plus Query: 11 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 70 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 401 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 460 Query: 71 gc 72 || Sbjct: 461 gc 462
>gb|AC008685.8| Homo sapiens chromosome 5 clone CTB-59H21, complete sequence Length = 159713 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 accgtctacatcatcatgtac 61 ||||||||||||||||||||| Sbjct: 123582 accgtctacatcatcatgtac 123602
>gb|AC010591.10| Homo sapiens chromosome 5 clone CTC-447K7, complete sequence Length = 172745 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 accgtctacatcatcatgtac 61 ||||||||||||||||||||| Sbjct: 26888 accgtctacatcatcatgtac 26908
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 gtcatcgagaccgtctacatcat 54 |||||||||| |||||||||||| Sbjct: 973652 gtcatcgagaacgtctacatcat 973630 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 529,511 Number of Sequences: 3902068 Number of extensions: 529511 Number of successful extensions: 36547 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36378 Number of HSP's gapped (non-prelim): 169 length of query: 97 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 76 effective length of database: 17,151,101,840 effective search space: 1303483739840 effective search space used: 1303483739840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)