ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480605.1| Oryza sativa (japonica cultivar-group), mRNA 105 4e-20
2gb|AY112372.1| Zea mays CL6272_1 mRNA sequence 105 4e-20
3emb|AJ844002.1| Plantago major mRNA for copper chaperone (cch1 g... 78 9e-12
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-10
5dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-10
6dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-10
7gb|AY253832.1| Lycopersicon esculentum copper chaperone (LeCCH) ... 64 1e-07
8ref|NM_105295.1| Arabidopsis thaliana metal ion binding AT1G6624... 60 2e-06
9gb|AY077678.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, comp... 60 2e-06
10gb|AY039898.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, comp... 60 2e-06
11emb|BX813458.1|CNS0ADQL Arabidopsis thaliana Full-length cDNA Co... 60 2e-06
12emb|BX816283.1|CNS0AD4L Arabidopsis thaliana Full-length cDNA Co... 60 2e-06
13gb|AC066691.3|AC066691 Arabidopsis thaliana chromosome 1 BAC T6J... 54 1e-04
14gb|AY603358.1| Populus alba x Populus tremula var. glandulosa co... 48 0.008
15ref|NM_115482.2| Arabidopsis thaliana CCH AT3G56240 (CCH) mRNA, ... 46 0.030
16gb|AF361860.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, c... 46 0.030
17gb|AY066056.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, c... 46 0.030
18emb|BX823024.1|CNS0A4Y4 Arabidopsis thaliana Full-length cDNA Co... 46 0.030
19gb|AY085657.1| Arabidopsis thaliana clone 16647 mRNA, complete s... 46 0.030
20gb|U88711.1|ATU88711 Arabidopsis thaliana copper homeostasis fac... 46 0.030
21ref|XM_764566.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 0.47
22ref|XM_466081.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.4
23emb|BX088523.6| Human DNA sequence from clone DASS-179P20 on chr... 38 7.4
24emb|AL662890.3| Human DNA sequence from clone XXbac-308K3 on chr... 38 7.4
25emb|AL671879.2| Human DNA sequence from clone XXbac-254L4 on chr... 38 7.4
26gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 38 7.4
27emb|AL390196.17| Human DNA sequence from clone RP11-60E24 on chr... 38 7.4
28gb|BT009582.1| Triticum aestivum clone wre1n.pk0042.e2:fis, full... 38 7.4
29gb|AY137471.1| Panagrellus redivivus heat shock protein 70-C mRN... 38 7.4
30emb|AJ585386.1| Hordeum vulgare subsp. vulgare mRNA for chopper ... 38 7.4
31dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 38 7.4
32gb|AC068288.6| Homo sapiens BAC clone RP11-592A2 from 2, complet... 38 7.4
33dbj|AK121599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.4
34gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, compl... 38 7.4
35gb|AF198626.1|AF198626 Oryza sativa copper chaperone homolog CCH... 38 7.4
36dbj|AK058520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.4
37gb|AY107613.1| Zea mays PCO107505 mRNA sequence 38 7.4
38dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.4
39dbj|AP002853.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.4 
>ref|XM_480605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 246

 Score =  105 bits (53), Expect = 4e-20
 Identities = 106/124 (85%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctcagggttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaa 89
           ||||||||||| ||||| || || || || |||||||||||||| ||||| || || || 
Sbjct: 19  ctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgggtactgggaaag 78

                                                                       
Query: 90  atggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggt 149
           ||| |||| || |||||||| || ||||||||||||||||||||||||||||| ||||| 
Sbjct: 79  atgcaaggagtggagtcctttgacgtagacatcaaggagcagaaggtcactgtcaaggga 138

               
Query: 150 aatg 153
           ||||
Sbjct: 139 aatg 142
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>gb|AY112372.1| Zea mays CL6272_1 mRNA sequence
          Length = 1354

 Score =  105 bits (53), Expect = 4e-20
 Identities = 106/124 (85%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctcagggttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaa 89
           |||| |||||||||||| || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 174 ctcaaggttggcatgtcctgtgagggctgtgttggagctgtcaagcgggtcctgggcaag 233

                                                                       
Query: 90  atggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggt 149
           |||||||| || ||||||| ||| |||||||||| ||| ||||||||||| |||||||| 
Sbjct: 234 atggaaggcgttgagtcctacgacgtagacatcatggaacagaaggtcaccgtgaagggc 293

               
Query: 150 aatg 153
           ||||
Sbjct: 294 aatg 297
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>emb|AJ844002.1| Plantago major mRNA for copper chaperone (cch1 gene)
          Length = 703

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/90 (86%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  atgtctcagactgtcagaactcagggttggcatgtcatgcgagggatgcgttggagctgt 70
           ||||||||||||||  || |||| |||||||||||| ||| | || || |||||||||||
Sbjct: 139 atgtctcagactgtt-gagctcaaggttggcatgtcgtgccaaggctgtgttggagctgt 197

                                         
Query: 71  taancgggttcttggcaaaatggaaggtgt 100
           ||| ||||| ||||| ||||||||||||||
Sbjct: 198 taagcgggtccttggaaaaatggaaggtgt 227
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 102     gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
               |||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 6154649 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatg 6154700



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                 
Query: 30      ctcagggttggcatgtcatgcgagggatgcgttggagctgttaancgggt 79
               ||||||||||| ||||| || || || || |||||||||||||| |||||
Sbjct: 6153685 ctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgggt 6153734
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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 102   gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
             |||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 18042 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatg 18093



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 30    ctcagggttggcatgtcatgcgagggatgcgttggagctgttaancgggt 79
             ||||||||||| ||||| || || || || |||||||||||||| |||||
Sbjct: 17078 ctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgggt 17127
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>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0486F07
          Length = 154926

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 102    gagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
              |||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 110666 gagtcctttgacgtagacatcaaggagcagaaggtcactgtcaagggaaatg 110717



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 30     ctcagggttggcatgtcatgcgagggatgcgttggagctgttaancgggt 79
              ||||||||||| ||||| || || || || |||||||||||||| |||||
Sbjct: 109702 ctcagggttgggatgtcctgtgaaggttgtgttggagctgttaagcgggt 109751
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>gb|AY253832.1| Lycopersicon esculentum copper chaperone (LeCCH) mRNA, complete cds
          Length = 391

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 116/143 (81%), Gaps = 1/143 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  atgtctcagactgtcagaactcagggttggcatgtcatgcgagggatgcgttggagctgt 70
           ||||||||||||||| |  |||| |||||||||||||||||| || || ||||| |||||
Sbjct: 3   atgtctcagactgtc-gttctcaaggttggcatgtcatgcgaaggctgtgttggtgctgt 61

                                                                       
Query: 71  taancgggttcttggcaaaatggaaggtgtcgagtccttcgatgtagacatcaaggagca 130
            ||  ||||| | || |||||||||||||| ||  | |||||  | ||  | ||||||||
Sbjct: 62  gaaaagggttttggggaaaatggaaggtgtagaaactttcgacattgatctgaaggagca 121

                                  
Query: 131 gaaggtcactgtgaagggtaatg 153
            ||||| ||||||||||| ||||
Sbjct: 122 aaaggtgactgtgaagggcaatg 144
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>ref|NM_105295.1| Arabidopsis thaliana metal ion binding AT1G66240 mRNA, complete cds
          Length = 494

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  catgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaaggtgt 100
           |||| |||| |||||||| ||||||||||| ||  | |||||||| ||||||||||| ||
Sbjct: 125 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 184

                                            
Query: 101 cgagtccttcgatgtagacatcaaggagcagaa 133
            ||||| || || || || || |||||||||||
Sbjct: 185 ggagtcatttgacgttgatataaaggagcagaa 217
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>gb|AY077678.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds
          Length = 321

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  catgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaaggtgt 100
           |||| |||| |||||||| ||||||||||| ||  | |||||||| ||||||||||| ||
Sbjct: 120 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 179

                                            
Query: 101 cgagtccttcgatgtagacatcaaggagcagaa 133
            ||||| || || || || || |||||||||||
Sbjct: 180 ggagtcatttgacgttgatataaaggagcagaa 212
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>gb|AY039898.1| Arabidopsis thaliana At1g66240/T6J19_6 mRNA, complete cds
          Length = 495

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  catgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaaggtgt 100
           |||| |||| |||||||| ||||||||||| ||  | |||||||| ||||||||||| ||
Sbjct: 125 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 184

                                            
Query: 101 cgagtccttcgatgtagacatcaaggagcagaa 133
            ||||| || || || || || |||||||||||
Sbjct: 185 ggagtcatttgacgttgatataaaggagcagaa 217
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>emb|BX813458.1|CNS0ADQL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB18ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 396

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  catgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaaggtgt 100
           |||| |||| |||||||| ||||||||||| ||  | |||||||| ||||||||||| ||
Sbjct: 23  catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 82

                                            
Query: 101 cgagtccttcgatgtagacatcaaggagcagaa 133
            ||||| || || || || || |||||||||||
Sbjct: 83  ggagtcatttgacgttgatataaaggagcagaa 115
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>emb|BX816283.1|CNS0AD4L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH39ZE01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 461

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  catgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaaggtgt 100
           |||| |||| |||||||| ||||||||||| ||  | |||||||| ||||||||||| ||
Sbjct: 88  catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggcgt 147

                                            
Query: 101 cgagtccttcgatgtagacatcaaggagcagaa 133
            ||||| || || || || || |||||||||||
Sbjct: 148 ggagtcatttgacgttgatataaaggagcagaa 180
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>gb|AC066691.3|AC066691 Arabidopsis thaliana chromosome 1 BAC T6J19 genomic sequence, complete
             sequence
          Length = 43666

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 41    catgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaaggt 98
             |||| |||| |||||||| ||||||||||| ||  | |||||||| ||||||||||||
Sbjct: 27146 catgacatgtgagggatgtgttggagctgtgaaaagagttcttgggaaaatggaaggt 27089
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>gb|AY603358.1| Populus alba x Populus tremula var. glandulosa copper chaperone
           (CCH) mRNA, complete cds
          Length = 540

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctcagggttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaa 89
           |||| |||||| |||||||| || || || ||||| ||||| ||  ||||| | ||||||
Sbjct: 74  ctcaaggttggtatgtcatgtgaaggctgtgttggggctgtgaaaagggttttgggcaaa 133

                      
Query: 90  atggaaggtgt 100
           |||||||||||
Sbjct: 134 atggaaggtgt 144
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>ref|NM_115482.2| Arabidopsis thaliana CCH AT3G56240 (CCH) mRNA, complete cds
          Length = 658

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 36  gttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaa 95
           ||||| ||||||||| | || |||||||| || || ||  | ||| | ||||||||||||
Sbjct: 114 gttggtatgtcatgccaaggctgcgttggtgccgtcaatagagttttaggcaaaatggaa 173

                                                                     
Query: 96  ggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
           || || ||||| || ||  | || ||||||||||| ||||| || ||||| |||||||
Sbjct: 174 ggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtgaaaggtaatg 231
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>gb|AF361860.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds
          Length = 628

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 36  gttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaa 95
           ||||| ||||||||| | || |||||||| || || ||  | ||| | ||||||||||||
Sbjct: 110 gttggtatgtcatgccaaggctgcgttggtgccgtcaatagagttttaggcaaaatggaa 169

                                                                     
Query: 96  ggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
           || || ||||| || ||  | || ||||||||||| ||||| || ||||| |||||||
Sbjct: 170 ggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtgaaaggtaatg 227
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>gb|AY066056.1| Arabidopsis thaliana AT3g56240/F18O21_200 mRNA, complete cds
          Length = 366

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 36  gttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaa 95
           ||||| ||||||||| | || |||||||| || || ||  | ||| | ||||||||||||
Sbjct: 25  gttggtatgtcatgccaaggctgcgttggtgccgtcaatagagttttaggcaaaatggaa 84

                                                                     
Query: 96  ggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
           || || ||||| || ||  | || ||||||||||| ||||| || ||||| |||||||
Sbjct: 85  ggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtgaaaggtaatg 142
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>emb|BX823024.1|CNS0A4Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB81ZE03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 602

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 36  gttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaa 95
           ||||| ||||||||| | || |||||||| || || ||  | ||| | ||||||||||||
Sbjct: 92  gttggtatgtcatgccaaggctgcgttggtgccgtcaatagagttttaggcaaaatggaa 151

                                                                     
Query: 96  ggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
           || || ||||| || ||  | || ||||||||||| ||||| || ||||| |||||||
Sbjct: 152 ggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtgaaaggtaatg 209
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>gb|AY085657.1| Arabidopsis thaliana clone 16647 mRNA, complete sequence
          Length = 631

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 36  gttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaa 95
           ||||| ||||||||| | || |||||||| || || ||  | ||| | ||||||||||||
Sbjct: 115 gttggtatgtcatgccaaggctgcgttggtgccgtcaatagagttttaggcaaaatggaa 174

                                                                     
Query: 96  ggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
           || || ||||| || ||  | || ||||||||||| ||||| || ||||| |||||||
Sbjct: 175 ggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtgaaaggtaatg 232
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>gb|U88711.1|ATU88711 Arabidopsis thaliana copper homeostasis factor (CCH) mRNA, complete
           cds
          Length = 585

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 36  gttggcatgtcatgcgagggatgcgttggagctgttaancgggttcttggcaaaatggaa 95
           ||||| ||||||||| | || |||||||| || || ||  | ||| | ||||||||||||
Sbjct: 58  gttggtatgtcatgccaaggctgcgttggtgccgtcaatagagttttaggcaaaatggaa 117

                                                                     
Query: 96  ggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaagggtaatg 153
           || || ||||| || ||  | || ||||||||||| ||||| || ||||| |||||||
Sbjct: 118 ggggttgagtcatttgacattgatatcaaggagcaaaaggtgacagtgaaaggtaatg 175
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>ref|XM_764566.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_93_39365_43285)
            partial mRNA
          Length = 3921

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 114  gtagacatcaaggagcagaaggtca 138
            |||||||||||||||| ||||||||
Sbjct: 1827 gtagacatcaaggagcggaaggtca 1803
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>ref|XM_466081.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 764

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 55/67 (82%)
 Strand = Plus / Plus

                                                                       
Query: 87  aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 146
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290

                  
Query: 147 ggtaatg 153
           || ||||
Sbjct: 291 ggcaatg 297
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>emb|BX088523.6| Human DNA sequence from clone DASS-179P20 on chromosome 6, complete
             sequence
          Length = 87597

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    cttggcaaaatggaaggtg 99
             |||||||||||||||||||
Sbjct: 27501 cttggcaaaatggaaggtg 27483
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>emb|AL662890.3| Human DNA sequence from clone XXbac-308K3 on chromosome 6 Contains a
            laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1)
            pseudogene, a pseudogene similar to part of nucleolar
            protein 5A NOL5A, a ribosomal protein L13 (RPL13)(BBC1)
            pseudogene and two CpG islands, complete sequence
          Length = 137288

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 81   cttggcaaaatggaaggtg 99
            |||||||||||||||||||
Sbjct: 2625 cttggcaaaatggaaggtg 2607
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>emb|AL671879.2| Human DNA sequence from clone XXbac-254L4 on chromosome 6 contains a
              novel SCAN domain and Integrase core domain containing
              protein (FLJ31087, KIAA1925), a putative novel transcript,
              a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1)
              pseudogene and two CpG islands, complete sequence
          Length = 176995

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cttggcaaaatggaaggtg 99
              |||||||||||||||||||
Sbjct: 158735 cttggcaaaatggaaggtg 158717
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 79      ttcttggcaaaatggaaggtgtcgagt 105
               ||||||||||||||||||  |||||||
Sbjct: 1331852 ttcttggcaaaatggaagacgtcgagt 1331826
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>emb|AL390196.17| Human DNA sequence from clone RP11-60E24 on chromosome 6 Contains a
             LAMR1 (laminin receptor 1) pseudogene, ESTs, STSs and
             GSSs, complete sequence
          Length = 43042

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    cttggcaaaatggaaggtg 99
             |||||||||||||||||||
Sbjct: 40084 cttggcaaaatggaaggtg 40066
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>gb|BT009582.1| Triticum aestivum clone wre1n.pk0042.e2:fis, full insert mRNA
           sequence
          Length = 601

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 52/63 (82%)
 Strand = Plus / Plus

                                                                       
Query: 86  caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 145
           |||||||||||| ||||||  ||||||  | |||||  || |||||||||| || |||||
Sbjct: 158 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 217

              
Query: 146 ggg 148
           |||
Sbjct: 218 ggg 220
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>gb|AY137471.1| Panagrellus redivivus heat shock protein 70-C mRNA, complete cds
          Length = 2202

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  agacatcaaggagcagaag 134
            |||||||||||||||||||
Sbjct: 1947 agacatcaaggagcagaag 1965
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>emb|AJ585386.1| Hordeum vulgare subsp. vulgare mRNA for chopper chaperone (cch
           gene)
          Length = 467

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 52/63 (82%)
 Strand = Plus / Plus

                                                                       
Query: 86  caaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaa 145
           |||||||||||| ||||||  ||||||  | |||||  || |||||||||| || |||||
Sbjct: 126 caaaatggaaggcgtcgagagcttcgacatcgacatggagcagcagaaggtgaccgtgaa 185

              
Query: 146 ggg 148
           |||
Sbjct: 186 ggg 188
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 79      ttcttggcaaaatggaaggtgtcgagt 105
               ||||||||||||||||||  |||||||
Sbjct: 3100905 ttcttggcaaaatggaagacgtcgagt 3100931
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>gb|AC068288.6| Homo sapiens BAC clone RP11-592A2 from 2, complete sequence
          Length = 124541

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 121    tcaaggagcagaaggtcac 139
              |||||||||||||||||||
Sbjct: 120474 tcaaggagcagaaggtcac 120492
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>dbj|AK121599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039M13, full
           insert sequence
          Length = 764

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 55/67 (82%)
 Strand = Plus / Plus

                                                                       
Query: 87  aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 146
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 231 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 290

                  
Query: 147 ggtaatg 153
           || ||||
Sbjct: 291 ggcaatg 297
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>gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, complete sequence
          Length = 129749

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 127    agcagaaggtcactgtgaa 145
              |||||||||||||||||||
Sbjct: 124362 agcagaaggtcactgtgaa 124380
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>gb|AF198626.1|AF198626 Oryza sativa copper chaperone homolog CCH mRNA, complete cds
          Length = 676

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 55/67 (82%)
 Strand = Plus / Plus

                                                                       
Query: 87  aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 146
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 139 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 198

                  
Query: 147 ggtaatg 153
           || ||||
Sbjct: 199 ggcaatg 205
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>dbj|AK058520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H06, full
           insert sequence
          Length = 1157

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 55/67 (82%)
 Strand = Plus / Plus

                                                                       
Query: 87  aaaatggaaggtgtcgagtccttcgatgtagacatcaaggagcagaaggtcactgtgaag 146
           ||||||||||| || ||| |||| ||  |||||||  || |||||||||| || ||||||
Sbjct: 620 aaaatggaaggcgtggagacctttgacatagacatggagcagcagaaggtgacggtgaag 679

                  
Query: 147 ggtaatg 153
           || ||||
Sbjct: 680 ggcaatg 686
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>gb|AY107613.1| Zea mays PCO107505 mRNA sequence
          Length = 1058

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 106 ccttcgatgtagacatcaaggagcagaaggt 136
           |||||||  ||||| ||||||||||||||||
Sbjct: 440 ccttcgacatagacctcaaggagcagaaggt 470
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>dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-667I23, complete
              sequence
          Length = 189892

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 38     tggcatgtcatgcgagggatgcg 60
              ||||||||||||| |||||||||
Sbjct: 169150 tggcatgtcatgccagggatgcg 169128
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>dbj|AP002853.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-46K15, complete
             sequence
          Length = 177463

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 38    tggcatgtcatgcgagggatgcg 60
             ||||||||||||| |||||||||
Sbjct: 86713 tggcatgtcatgccagggatgcg 86691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 971,314
Number of Sequences: 3902068
Number of extensions: 971314
Number of successful extensions: 63552
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63465
Number of HSP's gapped (non-prelim): 85
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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