ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal3i01 |
|---|---|
| Clone Library Name | barley_pub |
>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)| (Deoxyribonuclease PA3) Length = 270 Score = 96.3 bits (238), Expect = 7e-20 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Frame = +3 Query: 126 WSAEGHMLTCQIAQDLLEPAAAXAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLH 305 W A GH +AQ + P AA + +L + L+++ W D+ R +W++ LH Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60 Query: 306 FIDTPDKA---CTFDYARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSADRKYNLTEAL 476 FID D C DY RDC C A+AN+T ++ S+ N EAL Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111 Query: 477 LFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWD 605 FL HF+GD+ QP+H +GGN +N+ + + NLH WD Sbjct: 112 RFLVHFIGDMTQPLH-DEAYAVGGNKINVTFDGYHDNLHSDWD 153
>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)| (Deoxyribonuclease P1) Length = 270 Score = 96.3 bits (238), Expect = 7e-20 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Frame = +3 Query: 126 WSAEGHMLTCQIAQDLLEPAAAXAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLH 305 W A GH +AQ + P AA + +L + L+++ W D+ R +W++ LH Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60 Query: 306 FIDTPDKA---CTFDYARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSADRKYNLTEAL 476 FID D C DY RDC C A+AN+T ++ S+ N EAL Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111 Query: 477 LFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWD 605 FL HF+GD+ QP+H +GGN +N+ + + NLH WD Sbjct: 112 RFLVHFIGDMTQPLH-DEAYAVGGNKINVTFDGYHDNLHSDWD 153
>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)| (Single-stranded-nucleate endonuclease) (Deoxyribonuclease S1) Length = 287 Score = 92.0 bits (227), Expect = 1e-18 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 3/172 (1%) Frame = +3 Query: 99 LISAPAARAWSAEGHMLTCQIAQDLLEPAAAXAVKNLLPEEAGGDLSAMCVWPDQVRHWY 278 L A W GH IAQ + + +N+L +++ L+ + W D ++ Sbjct: 12 LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71 Query: 279 KYRWTSPLHFI---DTPDKACTFDYARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSAD 449 ++ P HFI D P ++C DY RDC C A+ N+T+ L+ GS Sbjct: 72 AGEFSKPYHFIDAQDNPPQSCGVDYDRDCGSAG-----CSISAIQNYTNILLESPNGS-- 124 Query: 450 RKYNLTEALLFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWD 605 AL F+ H +GDIHQP+H + GGN +++ + +NLHH+WD Sbjct: 125 ---EALNALKFVVHIIGDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWD 172
>AMPM1_HUMAN (P53582) Methionine aminopeptidase 1 (EC 3.4.11.18) (MetAP 1) (MAP| 1) (Peptidase M 1) Length = 386 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = +3 Query: 135 EGHMLTCQIAQDLLEPAAAXAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLHFID 314 EG L C++A+++L+ AA + EE + C+ R+ Y SPL++ + Sbjct: 137 EGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACI----ARNCYP----SPLNYYN 188 Query: 315 TPDKACTFDYARDCH 359 P CT CH Sbjct: 189 FPKSCCTSVNEVICH 203
>AMPM1_MOUSE (Q8BP48) Methionine aminopeptidase 1 (EC 3.4.11.18) (MetAP 1) (MAP| 1) (Peptidase M 1) Length = 386 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = +3 Query: 135 EGHMLTCQIAQDLLEPAAAXAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLHFID 314 EG L C++A+++L+ AA + EE + C+ R+ Y SPL++ + Sbjct: 137 EGMRLVCRLAREVLDIAAGMIKAGVTTEEIDHAVHLACI----ARNCYP----SPLNYYN 188 Query: 315 TPDKACTFDYARDCH 359 P CT CH Sbjct: 189 FPKSCCTSVNEVICH 203
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +1 Query: 472 PCYSCHTSWEIFTSPCMWGSRATWGATR*TYAGSST--SPTSTMYGTGR*YSPCSP 633 P YS + TSP + T+ T TY+ +S SPTS Y +G YSP SP Sbjct: 1666 PSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSP 1721
>PHLD_BACCE (P33376) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Cereolysin A) Length = 283 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = +3 Query: 342 YARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSADRKYNLTEALLFLS---HFMGDIHQ 512 +A +DP K A T G + + ++ +A +L H++GD++Q Sbjct: 104 FASHFYDPDNGKTYIPYAKQAKETGAKYFKLAGESYKNKDMKQAFFYLGLSLHYLGDVNQ 163 Query: 513 PMH 521 PMH Sbjct: 164 PMH 166
>PHLC_BACCE (P09598) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Cereolysin A) Length = 283 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = +3 Query: 342 YARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSADRKYNLTEALLFLS---HFMGDIHQ 512 +A +DP K A T G + + ++ +A +L H++GD++Q Sbjct: 104 FASHFYDPDNGKTYIPFAKQAKETGAKYFKLAGESYKNKDMKQAFFYLGLSLHYLGDVNQ 163 Query: 513 PMH 521 PMH Sbjct: 164 PMH 166
>DUS5_HUMAN (Q16690) Dual specificity protein phosphatase 5 (EC 3.1.3.48) (EC| 3.1.3.16) (Dual specificity protein phosphatase hVH3) Length = 384 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = +3 Query: 195 AVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLHFIDTPDKACTFDYARDCHDPSGA 374 A + L +E GG ++A+ V RHW K R S + T AC P+G Sbjct: 70 AARARLLQEGGGGVAAVVVLDQGSRHWQKLREESAARVVLTSLLACL---------PAGP 120 Query: 375 KDMCVAGAVANFTSQ 419 + + G F S+ Sbjct: 121 RVYFLKGGYETFYSE 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,745,777 Number of Sequences: 219361 Number of extensions: 1318075 Number of successful extensions: 5184 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4965 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5175 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
