ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPE2C_STRPU (P04111) SPEC 2C protein 32 0.38
2SPE2A_STRPU (P04110) SPEC 2A protein 30 1.4
3RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-bindin... 29 4.1
4CML18_ARATH (Q9M8U1) Calmodulin-like protein 18 (Calmodulin-15) ... 28 7.1
5CALB2_RAT (P47728) Calretinin (CR) 28 7.1
6CALB2_MOUSE (Q08331) Calretinin (CR) 28 7.1
7CALB2_HUMAN (P22676) Calretinin (CR) (29 kDa calbindin) 28 7.1
8CALB2_CHICK (P07090) Calretinin (CR) 28 9.2

>SPE2C_STRPU (P04111) SPEC 2C protein|
          Length = 151

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 18  KTIFQQFXEDSNGEXDKEELKNCFQKLEISFTEEEI 125
           K+ F+    D +G+   EELK  F+ +EI  T+E+I
Sbjct: 16  KSSFKSIDADGDGKITPEELKAAFKSIEIELTQEKI 51



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>SPE2A_STRPU (P04110) SPEC 2A protein|
          Length = 150

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 18  KTIFQQFXEDSNGEXDKEELKNCFQKLEISFTEEEI 125
           K+ F+    D +G+   EEL+  F+ +EI  T+E+I
Sbjct: 16  KSSFKSEDTDGDGKITSEELRAAFKSIEIDLTQEKI 51



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>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein|
           siRanBP)
          Length = 228

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +3

Query: 6   LRKCKTIFQQFXEDSNGEXDKEELKNC------FQKLEISFTEEE 122
           +  CKT  Q+F E +  E +KEE K+        +KL +  T+ E
Sbjct: 143 IENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTE 187



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>CML18_ARATH (Q9M8U1) Calmodulin-like protein 18 (Calmodulin-15) (AtCaM-15)|
          Length = 165

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 18  KTIFQQFXEDSNGEXDKEELKNCFQKLEISFTEEEI 125
           K IF+ F  D NG     EL +   KL  + T EE+
Sbjct: 96  KAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEEL 131



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>CALB2_RAT (P47728) Calretinin (CR)|
          Length = 271

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 24  IFQQFXEDSNGEXDKEELKNCFQKLE 101
           I++ F  D NG  + +EL+N FQ+LE
Sbjct: 24  IWKHFDADGNGYIEGKELENFFQELE 49



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>CALB2_MOUSE (Q08331) Calretinin (CR)|
          Length = 271

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 24  IFQQFXEDSNGEXDKEELKNCFQKLE 101
           I++ F  D NG  + +EL+N FQ+LE
Sbjct: 24  IWKHFDADGNGYIEGKELENFFQELE 49



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>CALB2_HUMAN (P22676) Calretinin (CR) (29 kDa calbindin)|
          Length = 271

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 24  IFQQFXEDSNGEXDKEELKNCFQKLE 101
           I++ F  D NG  + +EL+N FQ+LE
Sbjct: 24  IWKHFDADGNGYIEGKELENFFQELE 49



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>CALB2_CHICK (P07090) Calretinin (CR)|
          Length = 269

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 24  IFQQFXEDSNGEXDKEELKNCFQKLE 101
           +++ F  D NG  + +EL+N FQ+LE
Sbjct: 22  VWRHFDADGNGYIEGKELENFFQELE 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,427,157
Number of Sequences: 219361
Number of extensions: 95020
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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