ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY110655.1| Zea mays CL9117_1 mRNA sequence 64 1e-07
2ref|NM_194929.1| Oryza sativa (japonica cultivar-group) putative... 56 3e-05
3gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome... 56 3e-05
4gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome... 56 3e-05
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
6dbj|AK121800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
7dbj|AK061152.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 3e-05
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
10dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
11dbj|AB001920.1| Oryza sativa (japonica cultivar-group) gene for ... 40 1.8
12gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 6.9
13ref|XM_499981.1| Yarrowia lipolytica CLIB122, YALI0A11473g predi... 38 6.9
14gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosom... 38 6.9
15gb|AC167334.3| Gallus gallus BAC clone CH261-18C17 from chromoso... 38 6.9
16emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 38 6.9

>gb|AY110655.1| Zea mays CL9117_1 mRNA sequence
          Length = 1124

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                        
Query: 86   gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
            ||||||||| |||| |||||| ||||  ||| | ||||||||||||||||||||||||||
Sbjct: 1109 gctctccaacggcaagatcaccgcgaggatctccaactggggcgccaccatcacctccct 1050



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>ref|NM_194929.1| Oryza sativa (japonica cultivar-group) putative aldose 1-epimerase
           - like protein (OSJNAa0034B05.14), mRNA
          Length = 1032

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 86  gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
           ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 24  gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 83



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>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0004E08, complete sequence
          Length = 158294

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 86    gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
             ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 48212 gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 48153



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>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05,
              complete sequence
          Length = 125655

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                          
Query: 86     gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
              ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 113867 gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 113808



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 86      gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
               ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 3457083 gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 3457024



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>dbj|AK121800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096P07, full
           insert sequence
          Length = 1341

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 86  gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
           ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 123 gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 182



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>dbj|AK061152.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F01, full
           insert sequence
          Length = 1857

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 86  gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
           ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 630 gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 689



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 86      gctctccaatggcaggatcacggcgaacatcgcaaactggggcgccaccatcacctccct 145
               ||||||||||||| | ||||| || || |||||   ||||||||||||||||||||||||
Sbjct: 3457004 gctctccaatggccgcatcaccgccaagatcgccgcctggggcgccaccatcacctccct 3456945



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tctagcgaagcaagcaagca 38
               ||||||||||||||||||||
Sbjct: 3727557 tctagcgaagcaagcaagca 3727576



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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0089K24
          Length = 154137

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   tctagcgaagcaagcaagca 38
            ||||||||||||||||||||
Sbjct: 1099 tctagcgaagcaagcaagca 1118



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>dbj|AB001920.1| Oryza sativa (japonica cultivar-group) gene for phospholipase D,
            complete cds
          Length = 5871

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   tctagcgaagcaagcaagca 38
            ||||||||||||||||||||
Sbjct: 1758 tctagcgaagcaagcaagca 1739



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 96      ggcaggatcacggcgaaca 114
               |||||||||||||||||||
Sbjct: 2534236 ggcaggatcacggcgaaca 2534254



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>ref|XM_499981.1| Yarrowia lipolytica CLIB122, YALI0A11473g predicted mRNA
          Length = 3765

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 61   tggcggtggagcccgagat 79
            |||||||||||||||||||
Sbjct: 2957 tggcggtggagcccgagat 2975



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>gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosome ul, complete
             sequence
          Length = 186366

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    ctgcgtgctctccaatggc 98
             |||||||||||||||||||
Sbjct: 54461 ctgcgtgctctccaatggc 54479



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>gb|AC167334.3| Gallus gallus BAC clone CH261-18C17 from chromosome unknown, complete
             sequence
          Length = 220538

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    ctgcgtgctctccaatggc 98
             |||||||||||||||||||
Sbjct: 20831 ctgcgtgctctccaatggc 20813



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 61      tggcggtggagcccgagat 79
               |||||||||||||||||||
Sbjct: 1186633 tggcggtggagcccgagat 1186651


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 692,901
Number of Sequences: 3902068
Number of extensions: 692901
Number of successful extensions: 71550
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71394
Number of HSP's gapped (non-prelim): 156
length of query: 145
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 124
effective length of database: 17,151,101,840
effective search space: 2126736628160
effective search space used: 2126736628160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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