| Clone Name | baal3e23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056M18, full insert sequence Length = 1835 Score = 561 bits (283), Expect = e-157 Identities = 461/519 (88%), Gaps = 1/519 (0%) Strand = Plus / Plus Query: 41 ccgccgcgccgccgattcgccagccatgctgacggtatgcataaaatggcagaagcaggt 100 |||||||||||||||||||| |||||||| ||| ||| || | |||||||||||| || Sbjct: 107 ccgccgcgccgccgattcgc-agccatgccgaccgtaagcgtgaaatggcagaaggagac 165 Query: 101 ctttccaggcatagagattgatactagccagccgcctgtggttttcaagacccagttgta 160 ||| |||||||||||||| || || |||||||||||||| || || ||||||||| | || Sbjct: 166 cttcccaggcatagagatagacaccagccagccgcctgttgtctttaagacccagctata 225 Query: 161 cacactgactggtgtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaa 220 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 226 cactctgactggtgtaccacctgaaaggcaaaaaattatggtgaagggtggaatattgaa 285 Query: 221 ggatgacacagattggtctactttgggactcaaagatggtcaaaagttgatgatgatagg 280 |||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||| Sbjct: 286 ggatgatgcagattggtctactttgggagtgaaagatggtcaaaaattgatgatgatagg 345 Query: 281 cacggctgatgaaattgtgaaagctccagagaacggccccgtgtttgttgaagatttacc 340 || |||||||| |||||||||||||||||||| || || || ||||| || ||| |||| Sbjct: 346 tacagctgatgagattgtgaaagctccagagaaaggaccagtatttgtagaggatctacc 405 Query: 341 agaagaagagcaagcggctgcactggggcacagtgctggtctctataatctggggaatac 400 |||||||||||||| || ||||||||| |||||||||||||| ||||| |||||||||| Sbjct: 406 agaagaagagcaagtggttgcactgggacacagtgctggtctttataacttggggaatac 465 Query: 401 atgttacatgaattccaccctgcagtgtctgcattctgttccagagctcaagtcagcact 460 |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| | Sbjct: 466 atgttacatgaattccactttgcagtgcctgcattctgttccagagctgaagtcagcttt 525 Query: 461 actgagttattcagataatgcgaggggcaatggggtggatcaagcatcccatactttgac 520 | |||||||||||||||||| |||||| ||||| || || ||||| ||||||| |||||| Sbjct: 526 attgagttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgac 585 Query: 521 agttgcaactcgtaatacttttggagagcttgatcaaag 559 |||||||||||||||||||| ||||||||||||||||| Sbjct: 586 tgttgcaactcgtaatactttcggagagcttgatcaaag 624
>dbj|AK062019.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-F09, full insert sequence Length = 1629 Score = 561 bits (283), Expect = e-157 Identities = 461/519 (88%), Gaps = 1/519 (0%) Strand = Plus / Plus Query: 41 ccgccgcgccgccgattcgccagccatgctgacggtatgcataaaatggcagaagcaggt 100 |||||||||||||||||||| |||||||| ||| ||| || | |||||||||||| || Sbjct: 34 ccgccgcgccgccgattcgc-agccatgccgaccgtaagcgtgaaatggcagaaggagac 92 Query: 101 ctttccaggcatagagattgatactagccagccgcctgtggttttcaagacccagttgta 160 ||| |||||||||||||| || || |||||||||||||| || || ||||||||| | || Sbjct: 93 cttcccaggcatagagatagacaccagccagccgcctgttgtctttaagacccagctata 152 Query: 161 cacactgactggtgtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaa 220 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 153 cactctgactggtgtaccacctgaaaggcaaaaaattatggtgaagggtggaatattgaa 212 Query: 221 ggatgacacagattggtctactttgggactcaaagatggtcaaaagttgatgatgatagg 280 |||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||| Sbjct: 213 ggatgatgcagattggtctactttgggagtgaaagatggtcaaaaattgatgatgatagg 272 Query: 281 cacggctgatgaaattgtgaaagctccagagaacggccccgtgtttgttgaagatttacc 340 || |||||||| |||||||||||||||||||| || || || ||||| || ||| |||| Sbjct: 273 tacagctgatgagattgtgaaagctccagagaaaggaccagtatttgtagaggatctacc 332 Query: 341 agaagaagagcaagcggctgcactggggcacagtgctggtctctataatctggggaatac 400 |||||||||||||| || ||||||||| |||||||||||||| ||||| |||||||||| Sbjct: 333 agaagaagagcaagtggttgcactgggacacagtgctggtctttataacttggggaatac 392 Query: 401 atgttacatgaattccaccctgcagtgtctgcattctgttccagagctcaagtcagcact 460 |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| | Sbjct: 393 atgttacatgaattccactttgcagtgcctgcattctgttccagagctgaagtcagcttt 452 Query: 461 actgagttattcagataatgcgaggggcaatggggtggatcaagcatcccatactttgac 520 | |||||||||||||||||| |||||| ||||| || || ||||| ||||||| |||||| Sbjct: 453 attgagttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgac 512 Query: 521 agttgcaactcgtaatacttttggagagcttgatcaaag 559 |||||||||||||||||||| ||||||||||||||||| Sbjct: 513 tgttgcaactcgtaatactttcggagagcttgatcaaag 551
>ref|NM_193394.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1512 Score = 531 bits (268), Expect = e-148 Identities = 424/476 (89%) Strand = Plus / Plus Query: 84 aaatggcagaagcaggtctttccaggcatagagattgatactagccagccgcctgtggtt 143 |||||||||||| || ||| |||||||||||||| || || |||||||||||||| || Sbjct: 193 aaatggcagaaggagaccttcccaggcatagagatagacaccagccagccgcctgttgtc 252 Query: 144 ttcaagacccagttgtacacactgactggtgtaccccctgaacggcaaaaaattatggtg 203 || ||||||||| | ||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 253 tttaagacccagctatacactctgactggtgtaccacctgaaaggcaaaaaattatggtg 312 Query: 204 aagggtggaatattgaaggatgacacagattggtctactttgggactcaaagatggtcaa 263 ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| Sbjct: 313 aagggtggaatattgaaggatgatgcagattggtctactttgggagtgaaagatggtcaa 372 Query: 264 aagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaacggccccgtg 323 || |||||||||||||| || |||||||| |||||||||||||||||||| || || || Sbjct: 373 aaattgatgatgataggtacagctgatgagattgtgaaagctccagagaaaggaccagta 432 Query: 324 tttgttgaagatttaccagaagaagagcaagcggctgcactggggcacagtgctggtctc 383 ||||| || ||| |||||||||||||||||| || ||||||||| |||||||||||||| Sbjct: 433 tttgtagaggatctaccagaagaagagcaagtggttgcactgggacacagtgctggtctt 492 Query: 384 tataatctggggaatacatgttacatgaattccaccctgcagtgtctgcattctgttcca 443 ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 493 tataacttggggaatacatgttacatgaattccactttgcagtgcctgcattctgttcca 552 Query: 444 gagctcaagtcagcactactgagttattcagataatgcgaggggcaatggggtggatcaa 503 ||||| |||||||| || |||||||||||||||||| |||||| ||||| || || ||| Sbjct: 553 gagctgaagtcagctttattgagttattcagataatgtgaggggtaatggtgttgaccaa 612 Query: 504 gcatcccatactttgacagttgcaactcgtaatacttttggagagcttgatcaaag 559 || ||||||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 613 gcctcccataatttgactgttgcaactcgtaatactttcggagagcttgatcaaag 668
>gb|AY106213.1| Zea mays PCO107956 mRNA sequence Length = 1770 Score = 468 bits (236), Expect = e-128 Identities = 416/476 (87%) Strand = Plus / Plus Query: 84 aaatggcagaagcaggtctttccaggcatagagattgatactagccagccgcctgtggtt 143 |||||||||||| || |||||||||||||||||||||| ||||||||||| || | ||| Sbjct: 79 aaatggcagaaggagctctttccaggcatagagattgacactagccagcctccgattgtt 138 Query: 144 ttcaagacccagttgtacacactgactggtgtaccccctgaacggcaaaaaattatggtg 203 |||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||| Sbjct: 139 ttcaagactcagttgtacacactaactggtgtgccacctgaacgccaaaaaattatggtg 198 Query: 204 aagggtggaatattgaaggatgacacagattggtctactttgggactcaaagatggtcaa 263 ||||| |||||||||||||| || |||||||||||||||||||| | |||||||| ||| Sbjct: 199 aagggaggaatattgaaggacgatgcagattggtctactttgggagtgaaagatggccaa 258 Query: 264 aagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaacggccccgtg 323 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||| Sbjct: 259 aagttgatgatgataggcacggctgatgagattgtgaaagctccggagaaaggtccagtg 318 Query: 324 tttgttgaagatttaccagaagaagagcaagcggctgcactggggcacagtgctggtctc 383 |||||||| ||| |||||||||||||||||| | ||||||||| |||||||||||||| Sbjct: 319 tttgttgaggatctaccagaagaagagcaagtgattgcactgggtcacagtgctggtctt 378 Query: 384 tataatctggggaatacatgttacatgaattccaccctgcagtgtctgcattctgttcca 443 ||||| || ||||||||||| || ||||||||||| |||| |||||||||||||||||| Sbjct: 379 tataaccttgggaatacatgctatatgaattccacattgcaatgtctgcattctgttcca 438 Query: 444 gagctcaagtcagcactactgagttattcagataatgcgaggggcaatggggtggatcaa 503 ||||| |||||||| || || || |||||||||| || || || ||||| | || ||| Sbjct: 439 gagctgaagtcagcgctgctaagctattcagatactgtaagaggtaatggcattgaccaa 498 Query: 504 gcatcccatactttgacagttgcaactcgtaatacttttggagagcttgatcaaag 559 || || |||| |||||| ||||| ||||||||||| ||||| || ||||||||||| Sbjct: 499 gcttctcataatttgactgttgctactcgtaatacctttggtgatcttgatcaaag 554
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 157 bits (79), Expect = 5e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 84 aaatggcagaagcaggtctttccaggcatagagattgatactagccagccgcctgtggtt 143 |||||||||||| || ||| |||||||||||||| || || |||||||||||||| || Sbjct: 20583706 aaatggcagaaggagaccttcccaggcatagagatagacaccagccagccgcctgttgtc 20583647 Query: 144 ttcaagacccagttgtacacactgactggtgtaccccctgaacggcaaaaaattatggtg 203 || ||||||||| | ||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 20583646 tttaagacccagctatacactctgactggtgtaccacctgaaaggcaaaaaattatggtg 20583587 Query: 204 aagggtggaatattgaagg 222 ||||||||||||||||||| Sbjct: 20583586 aagggtggaatattgaagg 20583568 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 369 cacagtgctggtctctataatctggggaatacatgttacatgaattccaccctgcagtgt 428 |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 20582312 cacagtgctggtctttataacttggggaatacatgttacatgaattccactttgcagtgc 20582253 Query: 429 ctgcattctgttccagagctcaagtcagc 457 |||||||||||||||||||| |||||||| Sbjct: 20582252 ctgcattctgttccagagctgaagtcagc 20582224 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 465 agttattcagataatgcgaggggcaatggggtggatcaagcatcccatactttgacagtt 524 |||||||||||||||| |||||| ||||| || || ||||| ||||||| |||||| ||| Sbjct: 20582136 agttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgactgtt 20582077 Query: 525 gcaactcgtaatacttttggagagcttgatcaaag 559 ||||||||||||||||| ||||||||||||||||| Sbjct: 20582076 gcaactcgtaatactttcggagagcttgatcaaag 20582042 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Minus Query: 258 ggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaacggc 317 |||||||| |||||||||||||| || |||||||| |||||||||||||||||||| || Sbjct: 20583316 ggtcaaaaattgatgatgataggtacagctgatgagattgtgaaagctccagagaaagga 20583257 Query: 318 cccgtgtttgttgaagatttaccagaagaagagcaagcggctgcactgg 366 || || ||||| || ||| |||||||||||||||||| || |||||||| Sbjct: 20583256 ccagtatttgtagaggatctaccagaagaagagcaagtggttgcactgg 20583208 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 220 aggatgacacagattggtctactttgggactcaaagatg 258 ||||||| |||||||||||||||||||| | ||||||| Sbjct: 20583466 aggatgatgcagattggtctactttgggagtgaaagatg 20583428 Score = 42.1 bits (21), Expect = 1.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 41 ccgccgcgccgccgattcgccagccatgc 69 ||||||||||||||||||| ||||||||| Sbjct: 20585588 ccgccgcgccgccgattcg-cagccatgc 20585561
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24 Length = 172642 Score = 157 bits (79), Expect = 5e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 84 aaatggcagaagcaggtctttccaggcatagagattgatactagccagccgcctgtggtt 143 |||||||||||| || ||| |||||||||||||| || || |||||||||||||| || Sbjct: 45682 aaatggcagaaggagaccttcccaggcatagagatagacaccagccagccgcctgttgtc 45623 Query: 144 ttcaagacccagttgtacacactgactggtgtaccccctgaacggcaaaaaattatggtg 203 || ||||||||| | ||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 45622 tttaagacccagctatacactctgactggtgtaccacctgaaaggcaaaaaattatggtg 45563 Query: 204 aagggtggaatattgaagg 222 ||||||||||||||||||| Sbjct: 45562 aagggtggaatattgaagg 45544 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 369 cacagtgctggtctctataatctggggaatacatgttacatgaattccaccctgcagtgt 428 |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 44288 cacagtgctggtctttataacttggggaatacatgttacatgaattccactttgcagtgc 44229 Query: 429 ctgcattctgttccagagctcaagtcagc 457 |||||||||||||||||||| |||||||| Sbjct: 44228 ctgcattctgttccagagctgaagtcagc 44200 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 465 agttattcagataatgcgaggggcaatggggtggatcaagcatcccatactttgacagtt 524 |||||||||||||||| |||||| ||||| || || ||||| ||||||| |||||| ||| Sbjct: 44112 agttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgactgtt 44053 Query: 525 gcaactcgtaatacttttggagagcttgatcaaag 559 ||||||||||||||||| ||||||||||||||||| Sbjct: 44052 gcaactcgtaatactttcggagagcttgatcaaag 44018 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Minus Query: 258 ggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaacggc 317 |||||||| |||||||||||||| || |||||||| |||||||||||||||||||| || Sbjct: 45292 ggtcaaaaattgatgatgataggtacagctgatgagattgtgaaagctccagagaaagga 45233 Query: 318 cccgtgtttgttgaagatttaccagaagaagagcaagcggctgcactgg 366 || || ||||| || ||| |||||||||||||||||| || |||||||| Sbjct: 45232 ccagtatttgtagaggatctaccagaagaagagcaagtggttgcactgg 45184 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 220 aggatgacacagattggtctactttgggactcaaagatg 258 ||||||| |||||||||||||||||||| | ||||||| Sbjct: 45442 aggatgatgcagattggtctactttgggagtgaaagatg 45404 Score = 42.1 bits (21), Expect = 1.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 41 ccgccgcgccgccgattcgccagccatgc 69 ||||||||||||||||||| ||||||||| Sbjct: 47564 ccgccgcgccgccgattcg-cagccatgc 47537
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 157 bits (79), Expect = 5e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 84 aaatggcagaagcaggtctttccaggcatagagattgatactagccagccgcctgtggtt 143 |||||||||||| || ||| |||||||||||||| || || |||||||||||||| || Sbjct: 107528 aaatggcagaaggagaccttcccaggcatagagatagacaccagccagccgcctgttgtc 107469 Query: 144 ttcaagacccagttgtacacactgactggtgtaccccctgaacggcaaaaaattatggtg 203 || ||||||||| | ||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct: 107468 tttaagacccagctatacactctgactggtgtaccacctgaaaggcaaaaaattatggtg 107409 Query: 204 aagggtggaatattgaagg 222 ||||||||||||||||||| Sbjct: 107408 aagggtggaatattgaagg 107390 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 369 cacagtgctggtctctataatctggggaatacatgttacatgaattccaccctgcagtgt 428 |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 106134 cacagtgctggtctttataacttggggaatacatgttacatgaattccactttgcagtgc 106075 Query: 429 ctgcattctgttccagagctcaagtcagc 457 |||||||||||||||||||| |||||||| Sbjct: 106074 ctgcattctgttccagagctgaagtcagc 106046 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 465 agttattcagataatgcgaggggcaatggggtggatcaagcatcccatactttgacagtt 524 |||||||||||||||| |||||| ||||| || || ||||| ||||||| |||||| ||| Sbjct: 105958 agttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgactgtt 105899 Query: 525 gcaactcgtaatacttttggagagcttgatcaaag 559 ||||||||||||||||| ||||||||||||||||| Sbjct: 105898 gcaactcgtaatactttcggagagcttgatcaaag 105864 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Minus Query: 258 ggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaacggc 317 |||||||| |||||||||||||| || |||||||| |||||||||||||||||||| || Sbjct: 107138 ggtcaaaaattgatgatgataggtacagctgatgagattgtgaaagctccagagaaagga 107079 Query: 318 cccgtgtttgttgaagatttaccagaagaagagcaagcggctgcactgg 366 || || ||||| || ||| |||||||||||||||||| || |||||||| Sbjct: 107078 ccagtatttgtagaggatctaccagaagaagagcaagtggttgcactgg 107030 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 220 aggatgacacagattggtctactttgggactcaaagatg 258 ||||||| |||||||||||||||||||| | ||||||| Sbjct: 107288 aggatgatgcagattggtctactttgggagtgaaagatg 107250 Score = 42.1 bits (21), Expect = 1.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 41 ccgccgcgccgccgattcgccagccatgc 69 ||||||||||||||||||| ||||||||| Sbjct: 109410 ccgccgcgccgccgattcg-cagccatgc 109383
>ref|NM_113023.3| Arabidopsis thaliana UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); cysteine-type endopeptidase/ ubiquitin thiolesterase/ ubiquitin-specific protease AT3G21280 (UBP7) mRNA, complete cds Length = 1811 Score = 127 bits (64), Expect = 4e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 114 gagattgatactagccagccgcctgtggttttcaagacccagttgtacacactgactggt 173 |||||||||||||||||||| ||| | ||||||||| | |||||||| ||| ||| Sbjct: 247 gagattgatactagccagcctccttttgttttcaaggctcagttgtatgatttgagtgga 306 Query: 174 gtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaaggatgacacagat 233 || || ||||| |||||||| || ||||| || ||||| | ||||||||||| ||||| Sbjct: 307 gttccgcctgagcggcaaaagatcatggtcaaaggtggccttttgaaggatgatgcagat 366 Query: 234 tggtctactttgggactcaaagatggtcaaaagttgatgatgataggcacggctgatgaa 293 |||||||| |||||||| ||| |||||||||| ||||||||||| || || || |||||| Sbjct: 367 tggtctacgttgggactgaaaaatggtcaaaaattgatgatgatgggaactgcagatgaa 426 Query: 294 attgtgaaagctccagagaa 313 || ||||| ||||||||||| Sbjct: 427 atagtgaaggctccagagaa 446
>emb|BX824727.1|CNS0A6UW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH68ZB09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1809 Score = 127 bits (64), Expect = 4e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 114 gagattgatactagccagccgcctgtggttttcaagacccagttgtacacactgactggt 173 |||||||||||||||||||| ||| | ||||||||| | |||||||| ||| ||| Sbjct: 248 gagattgatactagccagcctccttttgttttcaaggctcagttgtatgatttgagtgga 307 Query: 174 gtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaaggatgacacagat 233 || || ||||| |||||||| || ||||| || ||||| | ||||||||||| ||||| Sbjct: 308 gttccgcctgagcggcaaaagatcatggtcaaaggtggccttttgaaggatgatgcagat 367 Query: 234 tggtctactttgggactcaaagatggtcaaaagttgatgatgataggcacggctgatgaa 293 |||||||| |||||||| ||| |||||||||| ||||||||||| || || || |||||| Sbjct: 368 tggtctacgttgggactgaaaaatggtcaaaaattgatgatgatgggaactgcagatgaa 427 Query: 294 attgtgaaagctccagagaa 313 || ||||| ||||||||||| Sbjct: 428 atagtgaaggctccagagaa 447
>gb|AF302661.1|AF302661 Arabidopsis thaliana ubiquitin-specific protease 7 (UBP7) gene, complete cds Length = 1587 Score = 127 bits (64), Expect = 4e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 114 gagattgatactagccagccgcctgtggttttcaagacccagttgtacacactgactggt 173 |||||||||||||||||||| ||| | ||||||||| | |||||||| ||| ||| Sbjct: 124 gagattgatactagccagcctccttttgttttcaaggctcagttgtatgatttgagtgga 183 Query: 174 gtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaaggatgacacagat 233 || || ||||| |||||||| || ||||| || ||||| | ||||||||||| ||||| Sbjct: 184 gttccgcctgagcggcaaaagatcatggtcaaaggtggccttttgaaggatgatgcagat 243 Query: 234 tggtctactttgggactcaaagatggtcaaaagttgatgatgataggcacggctgatgaa 293 |||||||| |||||||| ||| |||||||||| ||||||||||| || || || |||||| Sbjct: 244 tggtctacgttgggactgaaaaatggtcaaaaattgatgatgatgggaactgcagatgaa 303 Query: 294 attgtgaaagctccagagaa 313 || ||||| ||||||||||| Sbjct: 304 atagtgaaggctccagagaa 323
>gb|BT003992.1| Arabidopsis thaliana clone RAFL15-40-P05 (R20912) putative ubiquitin-specific protease 7 (UBP7) (At3g21280) mRNA, complete cds Length = 1685 Score = 127 bits (64), Expect = 4e-26 Identities = 166/200 (83%) Strand = Plus / Plus Query: 114 gagattgatactagccagccgcctgtggttttcaagacccagttgtacacactgactggt 173 |||||||||||||||||||| ||| | ||||||||| | |||||||| ||| ||| Sbjct: 123 gagattgatactagccagcctccttttgttttcaaggctcagttgtatgatttgagtgga 182 Query: 174 gtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaaggatgacacagat 233 || || ||||| |||||||| || ||||| || ||||| | ||||||||||| ||||| Sbjct: 183 gttccgcctgagcggcaaaagatcatggtcaaaggtggccttttgaaggatgatgcagat 242 Query: 234 tggtctactttgggactcaaagatggtcaaaagttgatgatgataggcacggctgatgaa 293 |||||||| |||||||| ||| |||||||||| ||||||||||| || || || |||||| Sbjct: 243 tggtctacgttgggactgaaaaatggtcaaaaattgatgatgatgggaactgcagatgaa 302 Query: 294 attgtgaaagctccagagaa 313 || ||||| ||||||||||| Sbjct: 303 atagtgaaggctccagagaa 322
>gb|BT014436.1| Lycopersicon esculentum clone 133758F, mRNA sequence Length = 1301 Score = 81.8 bits (41), Expect = 2e-12 Identities = 146/181 (80%) Strand = Plus / Plus Query: 174 gtaccccctgaacggcaaaaaattatggtgaagggtggaatattgaaggatgacacagat 233 ||||| |||||| ||||||| || ||||| || ||||| || ||||||||||| | ||| Sbjct: 253 gtaccacctgaaaggcaaaagataatggtcaaaggtggtttactgaaggatgacgctgat 312 Query: 234 tggtctactttgggactcaaagatggtcaaaagttgatgatgataggcacggctgatgaa 293 ||||||| | ||| | ||||| || |||| | |||||||||| || || ||||||||| Sbjct: 313 tggtctagagtaggagtaaaagaggggcaaaggctgatgatgatgggaactgctgatgaa 372 Query: 294 attgtgaaagctccagagaacggccccgtgtttgttgaagatttaccagaagaagagcaa 353 |||||||| || || ||||| || || | |||||||||||| | || |||||||||||| Sbjct: 373 attgtgaaggcccctgagaagggtcctatttttgttgaagatatgcctgaagaagagcaa 432 Query: 354 g 354 | Sbjct: 433 g 433
>ref|NM_104049.2| Arabidopsis thaliana UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); ubiquitin-specific protease AT1G51710 (UBP6) mRNA, complete cds Length = 1678 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 256 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 315 Query: 312 aa 313 || Sbjct: 316 aa 317
>gb|BT011830.1| Arabidopsis thaliana At1g51710 mRNA sequence Length = 1446 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 184 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 243 Query: 312 aa 313 || Sbjct: 244 aa 245
>gb|BT000658.1| Arabidopsis thaliana clone RAFL07-09-J05 (R10664) putative ubiquitin-specific protease 6 (UBP6) (At1g51710) mRNA, complete cds Length = 1689 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 257 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 316 Query: 312 aa 313 || Sbjct: 317 aa 318
>gb|AY114081.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP6 (At1g51710) mRNA, complete cds Length = 1480 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 187 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 246 Query: 312 aa 313 || Sbjct: 247 aa 248
>gb|AY050817.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP6 (At1g51710) mRNA, complete cds Length = 1659 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 252 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 311 Query: 312 aa 313 || Sbjct: 312 aa 313
>emb|BX815065.1|CNS0AD0E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZG04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1615 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 223 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 282 Query: 312 aa 313 || Sbjct: 283 aa 284
>emb|BX815103.1|CNS0ACY7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS32ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1608 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 244 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 303 Query: 312 aa 313 || Sbjct: 304 aa 305
>gb|AF302660.1|AF302660 Arabidopsis thaliana ubiquitin-specific protease 6 (UBP6) gene, complete cds Length = 1675 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 253 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 312 Query: 312 aa 313 || Sbjct: 313 aa 314
>gb|AY084730.1| Arabidopsis thaliana clone 116145 mRNA, complete sequence Length = 1658 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 252 aaagatggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagag 311 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||| Sbjct: 256 aaagatggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgag 315 Query: 312 aa 313 || Sbjct: 316 aa 317
>emb|BX822226.1|CNS0A7SI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZA01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1357 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/80 (85%), Gaps = 2/80 (2%) Strand = Plus / Plus Query: 236 gtctactttgggactcaaagatggtcaaaagttgatgatgataggcacggctgatgaaat 295 |||||| |||||||| ||| |||||||||| ||||||||||| || || || |||||||| Sbjct: 228 gtctacgttgggactgaaaaatggtcaaaaattgatgatgatgggaactgcagatgaaat 287 Query: 296 tgtgaaa--gctccagagaa 313 ||| || ||||||||||| Sbjct: 288 agtgtaagtgctccagagaa 307 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 114 gagattgatactagccagccgcctgtggttttcaagacccagttgta 160 |||||||||||||||||||| ||| | ||||||||| | |||||||| Sbjct: 103 gagattgatactagccagcctccttttgttttcaaggctcagttgta 149
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 258 ggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaa 313 |||||||| ||||||||||| || || |||||||| || ||||||||||| ||||| Sbjct: 66506 ggtcaaaaattgatgatgatgggaactgctgatgagatagtgaaagctcctgagaa 66561
>dbj|AB023045.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXL8 Length = 85599 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 258 ggtcaaaagttgatgatgataggcacggctgatgaaattgtgaaagctccagagaa 313 |||||||| ||||||||||| || || || |||||||| ||||| ||||||||||| Sbjct: 63010 ggtcaaaaattgatgatgatgggaactgcagatgaaatagtgaaggctccagagaa 62955 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 114 gagattgatactagccagccgcctgtggttttcaagacccagttgta 160 |||||||||||||||||||| ||| | ||||||||| | |||||||| Sbjct: 63363 gagattgatactagccagcctccttttgttttcaaggctcagttgta 63317
>emb|CR703266.2|CNS0G5LA Tetraodon nigroviridis full-length cDNA Length = 1007 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 390 ctggggaatacatgttacatgaattccaccctgcagtgtctgcattctgttccagagctc 449 |||||||| || ||||||||||| |||| |||||||||||| ||||| || |||||| Sbjct: 414 ctggggaacacctgttacatgaacgccacagtgcagtgtctgcgctctgtgccggagctc 473 Query: 450 aag 452 ||| Sbjct: 474 aag 476
>emb|CR683309.2|CNS0FQ6X Tetraodon nigroviridis full-length cDNA Length = 1007 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 390 ctggggaatacatgttacatgaattccaccctgcagtgtctgcattctgttccagagctc 449 |||||||| || ||||||||||| |||| |||||||||||| ||||| || |||||| Sbjct: 414 ctggggaacacctgttacatgaacgccacagtgcagtgtctgcgctctgtgccggagctc 473 Query: 450 aag 452 ||| Sbjct: 474 aag 476
>gb|BC057482.1| Danio rerio wu:fi15g04, mRNA (cDNA clone IMAGE:5915397), partial cds Length = 3075 Score = 44.1 bits (22), Expect = 0.49 Identities = 46/54 (85%) Strand = Plus / Plus Query: 378 ggtctctataatctggggaatacatgttacatgaattccaccctgcagtgtctg 431 |||||| |||| ||||| || ||||||| | |||| || ||||||||||||||| Sbjct: 369 ggtctccataacctgggcaacacatgtttcctgaactctaccctgcagtgtctg 422
>gb|BC047168.1| Danio rerio wu:fi15g04, mRNA (cDNA clone IMAGE:2601270), partial cds Length = 3274 Score = 44.1 bits (22), Expect = 0.49 Identities = 46/54 (85%) Strand = Plus / Plus Query: 378 ggtctctataatctggggaatacatgttacatgaattccaccctgcagtgtctg 431 |||||| |||| ||||| || ||||||| | |||| || ||||||||||||||| Sbjct: 474 ggtctccataacctgggcaacacatgtttcctgaactctaccctgcagtgtctg 527
>ref|XM_688692.1| PREDICTED: Danio rerio similar to Wu:fi15g04 protein (LOC565412), mRNA Length = 3478 Score = 44.1 bits (22), Expect = 0.49 Identities = 46/54 (85%) Strand = Plus / Plus Query: 378 ggtctctataatctggggaatacatgttacatgaattccaccctgcagtgtctg 431 |||||| |||| ||||| || ||||||| | |||| || ||||||||||||||| Sbjct: 467 ggtctccataacctgggcaacacatgtttcctgaactctaccctgcagtgtctg 520
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ccgccgcgccgccgattcgcc 61 ||||||||||||||||||||| Sbjct: 821964 ccgccgcgccgccgattcgcc 821984
>gb|AC102806.18| Mus musculus chromosome 3, clone RP23-341B15, complete sequence Length = 229984 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 caaagatggtcaaaagttgat 271 ||||||||||||||||||||| Sbjct: 200450 caaagatggtcaaaagttgat 200430
>emb|Z49472.1|SCYJL197W S.cerevisiae chromosome X reading frame ORF YJL197w Length = 4360 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 tggggaatacatgttacatgaattc 415 |||| |||||||||||||||||||| Sbjct: 1421 tgggaaatacatgttacatgaattc 1445
>emb|X77688.1|SCPRP21 S.cerevisiae PRP21, SPP91, CDC6, NUC1, CRY2 and S24 genes Length = 36017 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 tggggaatacatgttacatgaattc 415 |||| |||||||||||||||||||| Sbjct: 24998 tgggaaatacatgttacatgaattc 25022
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ccgccgcgccgccgattcgcc 61 ||||||||||||||||||||| Sbjct: 2142192 ccgccgcgccgccgattcgcc 2142212
>ref|XM_687415.1| PREDICTED: Danio rerio similar to ubiquitin specific protease 2 isoform b (LOC564054), mRNA Length = 1650 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 387 aatctggggaatacatgttacatgaattccaccctgcagtgtctg 431 ||||| || ||||| |||| |||||| |||| ||||||||||||| Sbjct: 730 aatctcggaaatacttgtttcatgaactccatcctgcagtgtctg 774
>gb|AC091060.10| Homo sapiens chromosome 18, clone RP11-723J4, complete sequence Length = 221941 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 tactgagttattcagataatg 480 ||||||||||||||||||||| Sbjct: 55570 tactgagttattcagataatg 55550
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ccgccgcgccgccgattcgcc 61 ||||||||||||||||||||| Sbjct: 1715459 ccgccgcgccgccgattcgcc 1715479
>gb|AC110183.10| Mus musculus chromosome 3, clone RP24-406M9, complete sequence Length = 171452 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 caaagatggtcaaaagttgat 271 ||||||||||||||||||||| Sbjct: 170111 caaagatggtcaaaagttgat 170131
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 tatgcataaaatggcagaagc 96 ||||||||||||||||||||| Sbjct: 137451 tatgcataaaatggcagaagc 137471
>gb|U95956.1|TCU95956 Trypanosoma cruzi P-glycoprotein (tcpgp1A) gene, complete cds Length = 3105 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 442 cagagctcaagtcagcactactgag 466 ||||||||||||||||| ||||||| Sbjct: 1473 cagagctcaagtcagcagtactgag 1497
>gb|DQ332541.1| Synthetic construct Saccharomyces cerevisiae clone FLH148618.01X UBP12 gene, complete sequence Length = 3765 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 tggggaatacatgttacatgaattc 415 |||| |||||||||||||||||||| Sbjct: 1106 tgggaaatacatgttacatgaattc 1130
>gb|BT020530.1| Arabidopsis thaliana At3g17000 mRNA, complete cds Length = 930 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 466 cctgaacggcaaaaaattat 485
>ref|NM_112576.2| Arabidopsis thaliana ubiquitin conjugating enzyme AT3G17000 mRNA, complete cds Length = 1263 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 583 cctgaacggcaaaaaattat 602
>ref|XM_641780.1| Dictyostelium discoideum hypothetical protein (DDB0189958), partial mRNA Length = 1707 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgttgaagatttaccagaagaaga 349 |||||||||||||||||| ||||| Sbjct: 1086 tgttgaagatttaccagaggaaga 1109
>ref|XM_515143.1| PREDICTED: Pan troglodytes similar to voltage-dependent T-type calcium channel alpha-1I subunit isoform a (LOC458848), mRNA Length = 10542 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 6790 ttccaccctgcagtgtctgc 6809
>ref|NM_021096.3| Homo sapiens calcium channel, voltage-dependent, alpha 1I subunit (CACNA1I), transcript variant 1, mRNA Length = 10007 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 5893 ttccaccctgcagtgtctgc 5912
>ref|NM_001003406.1| Homo sapiens calcium channel, voltage-dependent, alpha 1I subunit (CACNA1I), transcript variant 2, mRNA Length = 9902 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 5788 ttccaccctgcagtgtctgc 5807
>gb|AF106918.1| Homo sapiens BAC RG73E2 prion-like protein (PRND) gene, complete cds Length = 33260 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 atgaaattgtgaaagctcca 308 |||||||||||||||||||| Sbjct: 22027 atgaaattgtgaaagctcca 22046
>ref|XM_580757.2| PREDICTED: Bos taurus similar to olfactory receptor Olr1090 (LOC504610), mRNA Length = 2619 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 ggagagcttgatcaaagcat 562 |||||||||||||||||||| Sbjct: 1155 ggagagcttgatcaaagcat 1136
>gb|AY358985.1| Homo sapiens clone DNA87991 PRND (UNQ1830) mRNA, complete cds Length = 1157 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 atgaaattgtgaaagctcca 308 |||||||||||||||||||| Sbjct: 1111 atgaaattgtgaaagctcca 1130
>ref|XM_783330.1| PREDICTED: Strongylocentrotus purpuratus similar to GCN1 general control of amino-acid synthesis 1-like 1 (LOC583423), partial mRNA Length = 6013 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gctttctccttctccagtaa 23 |||||||||||||||||||| Sbjct: 995 gctttctccttctccagtaa 976
>ref|NM_012409.2| Homo sapiens prion protein 2 (dublet) (PRND), mRNA Length = 4047 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 atgaaattgtgaaagctcca 308 |||||||||||||||||||| Sbjct: 1126 atgaaattgtgaaagctcca 1145
>emb|AL133396.2| Human DNA sequence from clone RP5-1068H6 on chromosome 20p12.1-13 Contains part of a ribosomal protein S4 pseudogene, the PRNP gene for prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia), the PRND gene for prion protein 2 (dublet), a novel gene, an isopentenyl-diphosphate delta isomerase 1 (IDI1) pseudogene and two CpG islands, complete sequence Length = 148497 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 atgaaattgtgaaagctcca 308 |||||||||||||||||||| Sbjct: 95999 atgaaattgtgaaagctcca 96018
>emb|AL022319.2|HS172B20 Human DNA sequence from clone RP1-172B20 on chromosome 22q12.3-13.1 Contains the 3' part of the CACNA1I gene for voltage-dependent calcium channel, alpha 1I subunit, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 213721 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 64921 ttccaccctgcagtgtctgc 64940
>gb|BC043644.2| Homo sapiens prion protein 2 (dublet), mRNA (cDNA clone MGC:41841 IMAGE:5272576), complete cds Length = 4044 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 atgaaattgtgaaagctcca 308 |||||||||||||||||||| Sbjct: 1126 atgaaattgtgaaagctcca 1145
>gb|AF393329.1| Homo sapiens voltage-dependent calcium channel T-type alpha 1I subunit (CACNA1I) mRNA, complete cds Length = 9896 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 5788 ttccaccctgcagtgtctgc 5807
>gb|AF386935.1|AF386935 Arabidopsis thaliana Unknown protein (K14A17.7) mRNA, complete cds Length = 1194 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 582 cctgaacggcaaaaaattat 601
>ref|NM_182129.2| Caenorhabditis elegans F59E12.6b (F59E12.6) mRNA, complete cds Length = 1516 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 tggtcaaaagttgatgatgatagg 280 ||||||||| |||||||||||||| Sbjct: 1082 tggtcaaaatttgatgatgatagg 1105
>ref|NM_062694.3| Caenorhabditis elegans F59E12.6a (F59E12.6) mRNA, complete cds Length = 2601 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 tggtcaaaagttgatgatgatagg 280 ||||||||| |||||||||||||| Sbjct: 1325 tggtcaaaatttgatgatgatagg 1348
>emb|BX822676.1|CNS0A64H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1158 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 515 cctgaacggcaaaaaattat 534
>emb|BX823821.1|CNS0A5CS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1128 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 528 cctgaacggcaaaaaattat 547
>emb|BX825160.1|CNS0A54S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1195 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 547 cctgaacggcaaaaaattat 566
>gb|AF187844.1|AF187844 Homo sapiens prion-like protein (PRND) mRNA, complete cds Length = 1331 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 atgaaattgtgaaagctcca 308 |||||||||||||||||||| Sbjct: 1067 atgaaattgtgaaagctcca 1086
>gb|AF211189.1|AF211189 Homo sapiens T-type calcium channel alpha1 subunit Alpha1I-a isoform (CACNA1I) mRNA, complete cds Length = 5952 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 5788 ttccaccctgcagtgtctgc 5807
>gb|AF142567.1|AF142567 Homo sapiens T calcium channel alpha1I subunit, delta36B splice variant (CACNA1I) mRNA, complete cds Length = 6990 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 5893 ttccaccctgcagtgtctgc 5912
>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17 Length = 92620 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 30286 cctgaacggcaaaaaattat 30305
>gb|AC006961.16|AC006961 Homo sapiens chromosome 18, clone RP11-31P16, complete sequence Length = 171419 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tctttccaggcatagagatt 119 |||||||||||||||||||| Sbjct: 3290 tctttccaggcatagagatt 3309
>gb|AF129133.1|AF129133 Homo sapiens T-type calcium channel alpha1I subunit (CACNA1I) mRNA, complete cds Length = 6740 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 5893 ttccaccctgcagtgtctgc 5912
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tgaagatttaccagaagaag 348 |||||||||||||||||||| Sbjct: 977935 tgaagatttaccagaagaag 977954
>gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, complete sequence Length = 228657 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gtgtctgcattctgttccag 444 |||||||||||||||||||| Sbjct: 126990 gtgtctgcattctgttccag 127009
>gb|DQ027045.1| Arabidopsis thaliana ubiquitinating enzyme (At3g17000) mRNA, complete cds Length = 822 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cctgaacggcaaaaaattat 199 |||||||||||||||||||| Sbjct: 466 cctgaacggcaaaaaattat 485
>gb|AF003386.1| Caenorhabditis elegans cosmid F59E12, complete sequence Length = 42430 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tggtcaaaagttgatgatgatagg 280 ||||||||| |||||||||||||| Sbjct: 10245 tggtcaaaatttgatgatgatagg 10222
>dbj|AB032946.1| Homo sapiens mRNA for KIAA1120 protein, partial cds Length = 6405 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ttccaccctgcagtgtctgc 432 |||||||||||||||||||| Sbjct: 2297 ttccaccctgcagtgtctgc 2316
>emb|AL731834.2| Sminthopsis DNA sequence from clone XX-202F9, complete sequence Length = 60585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctttctccttctccagtaaa 24 |||||||||||||||||||| Sbjct: 31942 ctttctccttctccagtaaa 31923 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,514,803 Number of Sequences: 3902068 Number of extensions: 5514803 Number of successful extensions: 105862 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105418 Number of HSP's gapped (non-prelim): 440 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)