ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-101
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
3dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5gb|BT013894.1| Lycopersicon esculentum clone 132881F, mRNA sequence 72 1e-09
6ref|NM_112487.3| Arabidopsis thaliana AMP binding / catalytic AT... 62 1e-06
7gb|BT000771.1| Arabidopsis thaliana clone RAFL08-14-H03 (R11349)... 62 1e-06
8gb|AY250842.1| Arabidopsis thaliana acyl-activating enzyme 13 (A... 62 1e-06
9gb|AY050378.1| Arabidopsis thaliana AT3g16170/MSL1_21 mRNA, comp... 62 1e-06
10emb|BX823446.1|CNS0A5CA Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
11gb|AY084636.1| Arabidopsis thaliana clone 113798 mRNA, complete ... 62 1e-06
12gb|DQ455237.1| Medicago truncatula cDNA-AFLP fragment BC43M23_16... 54 3e-04
13emb|CR848706.10| Zebrafish DNA sequence from clone CH211-113K17 ... 48 0.021
14ref|XM_685690.1| PREDICTED: Danio rerio similar to AMP-dependent... 48 0.021
15emb|AL954337.9| Zebrafish DNA sequence from clone CH211-223J10 i... 48 0.021
16dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.33
17emb|AL928570.14| Mouse DNA sequence from clone RP23-183A10 on ch... 42 1.3
18ref|XM_472590.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
19gb|AC122190.4| Mus musculus BAC clone RP23-41J14 from 12, comple... 40 5.2
20gb|AC116325.5| Mus musculus BAC clone RP23-295K3 from 10, comple... 40 5.2
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
22gb|AC102022.8| Mus musculus chromosome 8, clone RP24-67K5, compl... 40 5.2
23gb|AC064863.5| Homo sapiens BAC clone RP11-392M11 from 2, comple... 40 5.2
24dbj|AK068725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
25gb|AC122205.6| Mus musculus BAC clone RP23-76C13 from chromosome... 40 5.2
26gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, c... 40 5.2
27gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome ... 40 5.2
28emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4,... 40 5.2
29gb|AC138027.3| Mus musculus BAC clone RP24-100L8 from 12, comple... 40 5.2
30gb|AC140338.3| Mus musculus BAC clone RP23-240M3 from 10, comple... 40 5.2 
>dbj|AK071943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087E02, full
           insert sequence
          Length = 1223

 Score =  375 bits (189), Expect = e-101
 Identities = 336/384 (87%), Gaps = 2/384 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttcaatgctctatttgcgcccctctattcaggaatacagtggttgagtttatgccaaaat 63
           ||||||||||||||||| ||||||||||| |||   ||||||||||||| ||||| ||||
Sbjct: 65  ttcaatgctctatttgcacccctctattctggat--cagtggttgagttcatgccgaaat 122

                                                                       
Query: 64  tcagtgtgaggggagtatggcagagatggtgtgagtcatatcccaagggcaccagtaaaa 123
           | |||||||||||| |||||||||| ||| ||||||||||||||||      ||||||||
Sbjct: 123 ttagtgtgaggggaatatggcagaggtggcgtgagtcatatcccaacaatggcagtaaaa 182

                                                                       
Query: 124 atgatgaggctattaccgtatttactggagttccaacagtgtacacacgcctactgcaag 183
           ||||||| || ||||| ||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 183 atgatgaagcaattacagtatttactggagttccaacaatgtacacacggctattgcaag 242

                                                                       
Query: 184 ggtacgatagtatgaatcctgatcaacaatctgcctgttcttacgctgcaaagcagctga 243
           |||| ||| ||||| ||||||| ||||| ||||| | ||| |  |||||||||||  |||
Sbjct: 243 ggtatgatggtatggatcctgaacaacagtctgcatcttcctttgctgcaaagcaattga 302

                                                                       
Query: 244 gactaatgatgtgtggatcctcagcactcccttctccactcatgaaacggtgggaggaag 303
           | ||||||||||||||||| || || || ||||| ||||| |||||||||||||||||||
Sbjct: 303 ggctaatgatgtgtggatcatcggcccttccttccccacttatgaaacggtgggaggaag 362

                                                                       
Query: 304 tgacatgccaccgtcttttggaacgctatggcatgactgagtttgtcatggcactgtcta 363
           ||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 363 tgacaggtcaccgtcttttggaacgatacggcatgactgagtttgtcatggcactgtcta 422

                                   
Query: 364 atccattgcatggtgcacggaaag 387
           | ||||||||||||||||| ||||
Sbjct: 423 acccattgcatggtgcacgtaaag 446
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                            
Query: 251      gatgtgtggatcctcagcactcccttctccactcatgaaacggtgggaggaagtgacatg 310
                |||||||||||| || || || ||||| ||||| |||||||||||||||||||||||| |
Sbjct: 32023515 gatgtgtggatcatcggcccttccttccccacttatgaaacggtgggaggaagtgacagg 32023574

                                                  
Query: 311      ccaccgtcttttggaacgctatggcatgactgag 344
                 ||||||||||||||||| || ||||||||||||
Sbjct: 32023575 tcaccgtcttttggaacgatacggcatgactgag 32023608



 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 44       ggttgagtttatgccaaaattcagtgtgaggggagtatggcagagatggtgtgagtcata 103
                ||||||||| ||||| ||||| |||||||||||| |||||||||| ||| ||||||||||
Sbjct: 32022566 ggttgagttcatgccgaaatttagtgtgaggggaatatggcagaggtggcgtgagtcata 32022625

                                                                   
Query: 104      tcccaagggcaccagtaaaaatgatgaggctattaccgtatttactggagt 154
                ||||||      ||||||||||||||| || ||||| ||||||||||||||
Sbjct: 32022626 tcccaacaatggcagtaaaaatgatgaagcaattacagtatttactggagt 32022676



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 343      agtttgtcatggcactgtctaatccattgcatggtgcacggaaag 387
                |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 32023698 agtttgtcatggcactgtctaacccattgcatggtgcacgtaaag 32023742



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                            
Query: 153      gttccaacagtgtacacacgcctactgcaagggtacgatagtatgaatcctgatcaacaa 212
                ||||||||| |||||||||| ||| |||||||||| ||| ||||| ||||||| ||||| 
Sbjct: 32022783 gttccaacaatgtacacacggctattgcaagggtatgatggtatggatcctgaacaacag 32022842

                                                       
Query: 213      tctgcctgttcttacgctgcaaagcagctgagactaatg 251
                ||||| | ||| |  |||||||||||  |||| ||||||
Sbjct: 32022843 tctgcatcttcctttgctgcaaagcaattgaggctaatg 32022881



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 4        ttcaatgctctatttgcgcccctctattc 32
                ||||||||||||||||| |||||||||||
Sbjct: 32022289 ttcaatgctctatttgcacccctctattc 32022317
to top
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                         
Query: 251   gatgtgtggatcctcagcactcccttctccactcatgaaacggtgggaggaagtgacatg 310
             |||||||||||| || || || ||||| ||||| |||||||||||||||||||||||| |
Sbjct: 65329 gatgtgtggatcatcggcccttccttccccacttatgaaacggtgggaggaagtgacagg 65388

                                               
Query: 311   ccaccgtcttttggaacgctatggcatgactgag 344
              ||||||||||||||||| || ||||||||||||
Sbjct: 65389 tcaccgtcttttggaacgatacggcatgactgag 65422



 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                         
Query: 44    ggttgagtttatgccaaaattcagtgtgaggggagtatggcagagatggtgtgagtcata 103
             ||||||||| ||||| ||||| |||||||||||| |||||||||| ||| ||||||||||
Sbjct: 64380 ggttgagttcatgccgaaatttagtgtgaggggaatatggcagaggtggcgtgagtcata 64439

                                                                
Query: 104   tcccaagggcaccagtaaaaatgatgaggctattaccgtatttactggagt 154
             ||||||      ||||||||||||||| || ||||| ||||||||||||||
Sbjct: 64440 tcccaacaatggcagtaaaaatgatgaagcaattacagtatttactggagt 64490



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 343   agtttgtcatggcactgtctaatccattgcatggtgcacggaaag 387
             |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 65512 agtttgtcatggcactgtctaacccattgcatggtgcacgtaaag 65556



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 4     ttcaatgctctatttgcgcccctctattc 32
             ||||||||||||||||| |||||||||||
Sbjct: 64103 ttcaatgctctatttgcacccctctattc 64131
to top
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                          
Query: 251    gatgtgtggatcctcagcactcccttctccactcatgaaacggtgggaggaagtgacatg 310
              |||||||||||| || || || ||||| ||||| |||||||||||||||||||||||| |
Sbjct: 120242 gatgtgtggatcatcggcccttccttccccacttatgaaacggtgggaggaagtgacagg 120301

                                                
Query: 311    ccaccgtcttttggaacgctatggcatgactgag 344
               ||||||||||||||||| || ||||||||||||
Sbjct: 120302 tcaccgtcttttggaacgatacggcatgactgag 120335



 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                          
Query: 44     ggttgagtttatgccaaaattcagtgtgaggggagtatggcagagatggtgtgagtcata 103
              ||||||||| ||||| ||||| |||||||||||| |||||||||| ||| ||||||||||
Sbjct: 119293 ggttgagttcatgccgaaatttagtgtgaggggaatatggcagaggtggcgtgagtcata 119352

                                                                 
Query: 104    tcccaagggcaccagtaaaaatgatgaggctattaccgtatttactggagt 154
              ||||||      ||||||||||||||| || ||||| ||||||||||||||
Sbjct: 119353 tcccaacaatggcagtaaaaatgatgaagcaattacagtatttactggagt 119403



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                           
Query: 343    agtttgtcatggcactgtctaatccattgcatggtgcacggaaag 387
              |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 120425 agtttgtcatggcactgtctaacccattgcatggtgcacgtaaag 120469



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 4      ttcaatgctctatttgcgcccctctattc 32
              ||||||||||||||||| |||||||||||
Sbjct: 119016 ttcaatgctctatttgcacccctctattc 119044
to top
>gb|BT013894.1| Lycopersicon esculentum clone 132881F, mRNA sequence
          Length = 2153

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 55  tgccaaaattcagtgtgaggggagtatggcagagatggtgtgagtcatatcc 106
           ||||||||||||||||||||||| | |||||||||||| |||| ||||||||
Sbjct: 914 tgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcc 965



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 321  ttggaacgctatggcatgactgagtttgtcatggcactgtctaatcc 367
            |||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct: 1180 ttggaacgttatggcatgactgagtttgtgatggcaatctctaatcc 1226
to top
>ref|NM_112487.3| Arabidopsis thaliana AMP binding / catalytic AT3G16170 mRNA, complete
            cds
          Length = 1980

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 315  cgtcttttggaacgctatggcatgactgagtttgtcatggcactgtc 361
            |||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 1159 cgtcttttggaaagatatggcatgactgagtttgtaatggcaatgtc 1205



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 141  gtatttactggagttccaacagtgtacac 169
            ||||||||||||||||||||  |||||||
Sbjct: 985  gtatttactggagttccaaccatgtacac 1013
to top
>gb|BT000771.1| Arabidopsis thaliana clone RAFL08-14-H03 (R11349) putative long-chain
            acyl-CoA synthetase (At3g16170) mRNA, complete cds
          Length = 1943

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 315  cgtcttttggaacgctatggcatgactgagtttgtcatggcactgtc 361
            |||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 1105 cgtcttttggaaagatatggcatgactgagtttgtaatggcaatgtc 1151



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 gtatttactggagttccaacagtgtacac 169
           ||||||||||||||||||||  |||||||
Sbjct: 931 gtatttactggagttccaaccatgtacac 959
to top
>gb|AY250842.1| Arabidopsis thaliana acyl-activating enzyme 13 (At3g16170) mRNA,
            complete cds
          Length = 1635

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 315  cgtcttttggaacgctatggcatgactgagtttgtcatggcactgtc 361
            |||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 988  cgtcttttggaaagatatggcatgactgagtttgtaatggcaatgtc 1034



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 gtatttactggagttccaacagtgtacac 169
           ||||||||||||||||||||  |||||||
Sbjct: 814 gtatttactggagttccaaccatgtacac 842
to top
>gb|AY050378.1| Arabidopsis thaliana AT3g16170/MSL1_21 mRNA, complete cds
          Length = 1568

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 315  cgtcttttggaacgctatggcatgactgagtttgtcatggcactgtc 361
            |||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 1108 cgtcttttggaaagatatggcatgactgagtttgtaatggcaatgtc 1154



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 gtatttactggagttccaacagtgtacac 169
           ||||||||||||||||||||  |||||||
Sbjct: 934 gtatttactggagttccaaccatgtacac 962
to top
>emb|BX823446.1|CNS0A5CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS3ZD04 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1920

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 315  cgtcttttggaacgctatggcatgactgagtttgtcatggcactgtc 361
            |||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 1149 cgtcttttggaaagatatggcatgactgagtttgtaatggcaatgtc 1195
to top
>gb|AY084636.1| Arabidopsis thaliana clone 113798 mRNA, complete sequence
          Length = 1896

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 315  cgtcttttggaacgctatggcatgactgagtttgtcatggcactgtc 361
            |||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 1110 cgtcttttggaaagatatggcatgactgagtttgtaatggcaatgtc 1156



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 gtatttactggagttccaacagtgtacac 169
           ||||||||||||||||||||  |||||||
Sbjct: 936 gtatttactggagttccaaccatgtacac 964
to top
>gb|DQ455237.1| Medicago truncatula cDNA-AFLP fragment BC43M23_168 sequence
          Length = 247

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 321 ttggaacgctatggcatgactgagtttgtcatggcactgtctaatccattg 371
           ||||| || |||||||||||||| |||||||||||  |||| |||||||||
Sbjct: 83  ttggagcgatatggcatgactgaatttgtcatggcgttgtcaaatccattg 133



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 246 ctaatgatgtgtggatcctcagcact 271
           |||||||||||||||||||| |||||
Sbjct: 8   ctaatgatgtgtggatcctctgcact 33
to top
>emb|CR848706.10| Zebrafish DNA sequence from clone CH211-113K17 in linkage group 7,
             complete sequence
          Length = 150558

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 327   cgctatggcatgactgagtttgtcatggcact 358
             |||||||||||||||||| ||| |||||||||
Sbjct: 41834 cgctatggcatgactgagattggcatggcact 41803
to top
>ref|XM_685690.1| PREDICTED: Danio rerio similar to AMP-dependent synthetase and ligase
            family member (5D567) (LOC562292), mRNA
          Length = 1740

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 327  cgctatggcatgactgagtttgtcatggcact 358
            |||||||||||||||||| ||| |||||||||
Sbjct: 1084 cgctatggcatgactgagattggcatggcact 1115
to top
>emb|AL954337.9| Zebrafish DNA sequence from clone CH211-223J10 in linkage group 19,
             complete sequence
          Length = 205289

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 327   cgctatggcatgactgagtttgtcatggcact 358
             |||||||||||||||||| ||| |||||||||
Sbjct: 85601 cgctatggcatgactgagattggcatggcact 85570
to top
>dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSL1
          Length = 79355

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 315   cgtcttttggaacgctatggcatgactgag 344
             |||||||||||| | |||||||||||||||
Sbjct: 71011 cgtcttttggaaagatatggcatgactgag 71040
to top
>emb|AL928570.14| Mouse DNA sequence from clone RP23-183A10 on chromosome X, complete
             sequence
          Length = 91550

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 284   catgaaacggtgggaggaagtgaca 308
             ||||||| |||||||||||||||||
Sbjct: 40744 catgaaagggtgggaggaagtgaca 40720
to top
>ref|XM_472590.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2130

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 106 ccaagggcaccagtaaaaatgatg 129
           |||||| |||||||||||||||||
Sbjct: 751 ccaaggtcaccagtaaaaatgatg 774
to top
>gb|AC122190.4| Mus musculus BAC clone RP23-41J14 from 12, complete sequence
          Length = 179390

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   gatcctcagcactcccttct 278
             ||||||||||||||||||||
Sbjct: 62903 gatcctcagcactcccttct 62922
to top
>gb|AC116325.5| Mus musculus BAC clone RP23-295K3 from 10, complete sequence
          Length = 196265

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   gcaccagtaaaaatgatgag 131
             ||||||||||||||||||||
Sbjct: 22781 gcaccagtaaaaatgatgag 22800
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 106      ccaagggcaccagtaaaaatgatg 129
                |||||| |||||||||||||||||
Sbjct: 21765282 ccaaggtcaccagtaaaaatgatg 21765259
to top
>gb|AC102022.8| Mus musculus chromosome 8, clone RP24-67K5, complete sequence
          Length = 156728

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   cctcagcactcccttctcca 281
             ||||||||||||||||||||
Sbjct: 74029 cctcagcactcccttctcca 74048
to top
>gb|AC064863.5| Homo sapiens BAC clone RP11-392M11 from 2, complete sequence
          Length = 156289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    tgggaggaagtgacatgcca 313
              ||||||||||||||||||||
Sbjct: 100565 tgggaggaagtgacatgcca 100546
to top
>dbj|AK068725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E14, full
           insert sequence
          Length = 2603

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 106 ccaagggcaccagtaaaaatgatg 129
           |||||| |||||||||||||||||
Sbjct: 889 ccaaggtcaccagtaaaaatgatg 912
to top
>gb|AC122205.6| Mus musculus BAC clone RP23-76C13 from chromosome 8, complete
            sequence
          Length = 249808

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cctcagcactcccttctcca 281
            ||||||||||||||||||||
Sbjct: 7605 cctcagcactcccttctcca 7586
to top
>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence
          Length = 148876

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   aagcagctgagactaatgat 253
             ||||||||||||||||||||
Sbjct: 66753 aagcagctgagactaatgat 66734
to top
>gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome 12, complete sequence
          Length = 236266

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   gatcctcagcactcccttct 278
             ||||||||||||||||||||
Sbjct: 58876 gatcctcagcactcccttct 58857
to top
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20,
             complete sequence
          Length = 141915

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 106   ccaagggcaccagtaaaaatgatg 129
             |||||| |||||||||||||||||
Sbjct: 76899 ccaaggtcaccagtaaaaatgatg 76876
to top
>gb|AC138027.3| Mus musculus BAC clone RP24-100L8 from 12, complete sequence
          Length = 201839

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    cctcagcactcccttctcca 281
              ||||||||||||||||||||
Sbjct: 164650 cctcagcactcccttctcca 164669
to top
>gb|AC140338.3| Mus musculus BAC clone RP23-240M3 from 10, complete sequence
          Length = 232876

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    gcaccagtaaaaatgatgag 131
              ||||||||||||||||||||
Sbjct: 118059 gcaccagtaaaaatgatgag 118040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,001,052
Number of Sequences: 3902068
Number of extensions: 3001052
Number of successful extensions: 51946
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51859
Number of HSP's gapped (non-prelim): 86
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top