ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis assoc... 31 1.7
2YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis assoc... 30 3.7

>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1) (DACA-1)
          Length = 559

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 241 NQHETPTICRQEHLSSYYMMSGCSPYAGDGKQWASAGS--TPYFSTLGSV*LQTNTDRH 71
           NQ  +       +LSSYY  S   PY+ +   W++AG    PY +T G +   +N D H
Sbjct: 43  NQSNSYPSMSDPYLSSYYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQL---SNGDHH 98



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>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1 homolog) (DACA-1 homolog)
          Length = 559

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 205 HLSSYYMMSGCSPYAGDGKQWASAGS--TPYFSTLGSV*LQTNTDRH 71
           +LSSYY  S   PY+     W++AG    PY +T G +   +N D H
Sbjct: 55  YLSSYYPPSIGFPYSLSEAPWSTAGDPPIPYLTTYGQL---SNGDHH 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,124,991
Number of Sequences: 219361
Number of extensions: 1502454
Number of successful extensions: 2838
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2838
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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